HHsearch alignment for GI: 254780484 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.95 E-value=1.8e-26 Score=171.38 Aligned_cols=162 Identities=22% Similarity=0.304 Sum_probs=113.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 1 P~VaivG~~n~GKSTL~n~L~~~~~~--~~~~~g~T~~i~~~~~~---~~~~~~~~i~~iDTPGh~~f~~---------- 65 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA--AGEAGGITQHIGAFEVP---AEVLKIPGITFIDTPGHEAFTN---------- 65 (168)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC--EEECCCCEEEECEEEEE---EEECCCCEEEEEECCCCHHHHH----------
T ss_conf 98999948998598999998586750--45169816871539999---8825887189998998167799----------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99877776642000001122357887545455432102575322122221111024--6899999999997531368986
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPT--TAQETLEKTKYLIRNYPTAHPE 187 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 187 (212)
T Consensus 66 ---~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 66 ---MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred ---HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCE
T ss_conf ---99999862688999986466754589999999987699789999893089879899999999975452455289875
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8999888889989999999987
Q gi|254780484|r 188 VIPTSSVKRKGIEVLRKAILET 209 (212)
Q Consensus 188 i~~vSA~~g~Gi~eL~~~I~~~ 209 (212)
T Consensus 143 iIpvSA~tG~gi~~L~~~i~~~ 164 (168)
T cd01887 143 IVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899998999999999999