HHsearch alignment for GI: 254780484 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.80  E-value=5.7e-18  Score=122.46  Aligned_cols=169  Identities=18%  Similarity=0.220  Sum_probs=113.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC-CEE-------EECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHH
Q ss_conf             68689997489988989999973897-379-------8738884145212026655567850896499997600101112
Q gi|254780484|r   28 GPPEIAFSGRSNVGKSSLINILVNRK-NLA-------RTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARA   99 (212)
Q Consensus        28 ~~p~VaivG~~NvGKSSLiNaL~g~~-~~a-------~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~   99 (212)
T Consensus         1 nIRNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~   80 (194)
T cd01891           1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG   80 (194)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHH
T ss_conf             98789999068987999999999974876304652168614758888728763345899998998899998998477777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             24478988889987777664200000112235788754545543210257532212222111102468999999999975
Q gi|254780484|r  100 PKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIR  179 (212)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~  179 (212)
T Consensus        81 -------------~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~-~~~v~~ei~~~~~  146 (194)
T cd01891          81 -------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-PEEVVDEVFDLFI  146 (194)
T ss_pred             -------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHH
T ss_conf             -------------89877643446789865378975899999999987299749988564589888-9999999999998


Q ss_pred             HCCCC----CCCEEEEECCCC----------CCHHHHHHHHHHHH
Q ss_conf             31368----986899988888----------99899999999872
Q gi|254780484|r  180 NYPTA----HPEVIPTSSVKR----------KGIEVLRKAILETI  210 (212)
Q Consensus       180 ~~~~~----~~~i~~vSA~~g----------~Gi~eL~~~I~~~l  210 (212)
T Consensus       147 ~~~~~~~~~~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~i  191 (194)
T cd01891         147 ELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHV  191 (194)
T ss_pred             HCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             639993335885787256553357788656465999999999658