HHsearch alignment for GI: 254780484 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.80 E-value=5.7e-18 Score=122.46 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=113.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CEE-------EECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHH
Q ss_conf 68689997489988989999973897-379-------8738884145212026655567850896499997600101112
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRK-NLA-------RTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARA 99 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~-~~a-------~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 99 (212)
T Consensus 1 nIRNv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHH
T ss_conf 98789999068987999999999974876304652168614758888728763345899998998899998998477777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 24478988889987777664200000112235788754545543210257532212222111102468999999999975
Q gi|254780484|r 100 PKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIR 179 (212)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~ 179 (212)
T Consensus 81 -------------~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~-~~~v~~ei~~~~~ 146 (194)
T cd01891 81 -------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-PEEVVDEVFDLFI 146 (194)
T ss_pred -------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHHHH
T ss_conf -------------89877643446789865378975899999999987299749988564589888-9999999999998
Q ss_pred HCCCC----CCCEEEEECCCC----------CCHHHHHHHHHHHH
Q ss_conf 31368----986899988888----------99899999999872
Q gi|254780484|r 180 NYPTA----HPEVIPTSSVKR----------KGIEVLRKAILETI 210 (212)
Q Consensus 180 ~~~~~----~~~i~~vSA~~g----------~Gi~eL~~~I~~~l 210 (212)
T Consensus 147 ~~~~~~~~~~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~i 191 (194)
T cd01891 147 ELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHV 191 (194)
T ss_pred HCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 639993335885787256553357788656465999999999658