HHsearch alignment for GI: 254780484 and conserved domain: cd01898
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.96 E-value=2.2e-28 Score=182.37 Aligned_cols=162 Identities=22% Similarity=0.230 Sum_probs=106.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~~~~--~V~~~pgTT~~~~~g~-----i~~~~~~~i~~~DtpGi~~~~~~~~~l~-~~~l 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGV-----VRVDDGRSFVVADIPGLIEGASEGKGLG-HRFL 73 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC--EEECCCCCCCCCEEEE-----EEECCCCEEEEECCCCCCCCCCCCCCHH-HHHH
T ss_conf 589989999989999999967876--0325666523744779-----9936985699964886444554662248-9998
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHHHHC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9877776642000001122357887--54545543210-----2575322122221111024689999999999753136
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGVK--QIDQDVFSFLD-----KKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPT 183 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 183 (212)
T Consensus 74 -----~~i~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~ 143 (170)
T cd01898 74 -----RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE-----L 143 (170)
T ss_pred -----HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHH-----C
T ss_conf -----613345617999989987898999999999999827444038650677620242835638999999985-----6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 898689998888899899999999872
Q gi|254780484|r 184 AHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 184 ~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 144 ~~~~vi~iSA~~g~gi~~L~~~I~~~L 170 (170)
T cd01898 144 WGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 999589997547979999999999669