HHsearch alignment for GI: 254780484 and conserved domain: cd03236
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.75 E-value=0.0011 Score=40.26 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999748998898999997389
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNR 52 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~ 52 (212)
T Consensus 28 i~gLiGpNGaGKSTLlk~i~Gl 49 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899997099999999679