HHsearch alignment for GI: 254780484 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.97 E-value=0.00063 Score=41.70 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89997489988989999973897
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRK 53 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~ 53 (212)
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~gl~ 64 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999984999999996454