HHsearch alignment for GI: 254780484 and conserved domain: cd03251

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00  E-value=0.00058  Score=41.90  Aligned_cols=23  Identities=35%  Similarity=0.536  Sum_probs=21.2

Q ss_conf             89997489988989999973897
Q gi|254780484|r   31 EIAFSGRSNVGKSSLINILVNRK   53 (212)
Q Consensus        31 ~VaivG~~NvGKSSLiNaL~g~~   53 (212)
T Consensus        30 ~i~IvG~sGsGKSTLl~ll~gl~   52 (234)
T cd03251          30 TVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_conf             99999899982999999996676