HHsearch alignment for GI: 254780484 and conserved domain: cd03271
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.82 E-value=0.00083 Score=41.01 Aligned_cols=26 Identities=38% Similarity=0.408 Sum_probs=20.4
Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8876686899974899889899999738
Q gi|254780484|r 24 LPKAGPPEIAFSGRSNVGKSSLINILVN 51 (212)
Q Consensus 24 ~P~~~~p~VaivG~~NvGKSSLiNaL~g 51 (212)
T Consensus 18 i~~G~--~~aIiG~sGsGKSTLl~~~L~ 43 (261)
T cd03271 18 IPLGV--LTCVTGVSGSGKSSLINDTLY 43 (261)
T ss_pred ECCCC--EEEEECCCCCCHHHHHHHHHH
T ss_conf 88999--999987999869999999988