HHsearch alignment for GI: 254780484 and conserved domain: cd03271

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.82  E-value=0.00083  Score=41.01  Aligned_cols=26  Identities=38%  Similarity=0.408  Sum_probs=20.4

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             8876686899974899889899999738
Q gi|254780484|r   24 LPKAGPPEIAFSGRSNVGKSSLINILVN   51 (212)
Q Consensus        24 ~P~~~~p~VaivG~~NvGKSSLiNaL~g   51 (212)
T Consensus        18 i~~G~--~~aIiG~sGsGKSTLl~~~L~   43 (261)
T cd03271          18 IPLGV--LTCVTGVSGSGKSSLINDTLY   43 (261)
T ss_pred             ECCCC--EEEEECCCCCCHHHHHHHHHH
T ss_conf             88999--999987999869999999988