>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=96.95  E-value=0.00059  Score=41.86  Aligned_cols=28  Identities=29%  Similarity=0.455  Sum_probs=23.2

Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             887668689997489988989999973897
Q gi|254780484|r   24 LPKAGPPEIAFSGRSNVGKSSLINILVNRK   53 (212)
Q Consensus        24 ~P~~~~p~VaivG~~NvGKSSLiNaL~g~~   53 (212)
T Consensus        21 i~~Ge--~~~ilGpSGsGKSTLl~li~Gl~   48 (211)
T cd03298          21 FAQGE--ITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             ECCCC--EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             88998--99999999955999999997699