HHsearch alignment for GI: 254780484 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.57 E-value=3.8e-14 Score=100.47 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=85.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEE-ECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 689997489988989999973897379873888414521202665556785-0896499997600101112244789888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLK-NNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~-~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 1 iKivllGd~gVGKTsli~r~~~~~~~f~~~y~~Tig~~----~~~k~~~~~~~~~i~l~iwDtaG~e~~~~l~~~----- 71 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCD----FVVKEVPVDTDNTVELFIFDSAGQELYSDMVSN----- 71 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEE----EEEEEEEECCCCEEEEEEEECCCCCCHHHHHHH-----
T ss_conf 99999995995889999999978886688888864578----899999978997999999979998400678999-----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8998777766420000011223578875-454554321--0257532212222111102468999999999975313689
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGVKQ-IDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH 185 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (212)
T Consensus 72 -----~~---~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r~V~--~~e~~~~a~~~---~ 138 (164)
T cd04101 72 -----YW---ESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVT--DAQAQAFAQAN---Q 138 (164)
T ss_pred -----HH---HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC--HHHHHHHHHHC---C
T ss_conf -----97---64268999970774668999999999999766898689998722445245569--99999999988---9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 86899988888998999999998728
Q gi|254780484|r 186 PEVIPTSSVKRKGIEVLRKAILETIN 211 (212)
Q Consensus 186 ~~i~~vSA~~g~Gi~eL~~~I~~~l~ 211 (212)
T Consensus 139 ~~~~E~SAk~g~nV~e~F~~lar~~~ 164 (164)
T cd04101 139 LKFFKTSALRGVGYEEPFESLARAFH 164 (164)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 98999866889098999999999869