HHsearch alignment for GI: 254780484 and conserved domain: cd04102
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.02 E-value=5.6e-10 Score=76.50 Aligned_cols=166 Identities=12% Similarity=0.163 Sum_probs=84.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEE--EECCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678--5089649999760010111224478988
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNL--KNNLPAMALVDMPGYGYARAPKKNVDSW 107 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~--~~~~~~~~~~DtpG~~~~~~~~~~~~~~ 107 (212)
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~f~~--~~~~TiG~~v~~-k~~~~~~~~~~~k~~~l~lWDtaGqery~sl~~~y--- 74 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDV-KHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF--- 74 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC--CCCCCEEEEEEE-EEEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHH---
T ss_conf 989999999989999999998398888--888850367899-99993378767838999999899877577678997---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC-----CHHHHHH------------------HHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 889987777664200000112235788-----7545455------------------43210257532212222111102
Q gi|254780484|r 108 GGLIVRYLSERSTLRCVYLLIDCRHGV-----KQIDQDV------------------FSFLDKKAVSYQIVLTKIDKLSP 164 (212)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------------------~~~~~~~~~~~~~v~nK~D~~~~ 164 (212)
T Consensus 75 -------Y---r~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~ 144 (202)
T cd04102 75 -------Y---NQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred -------H---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCC
T ss_conf -------5---889899999989498999869999999975367666545566655533346789758999760652434
Q ss_pred HHHHHHH-----HHHHHH--HHHC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 4689999-----999999--7531--368986899988888998999999998728
Q gi|254780484|r 165 TTAQETL-----EKTKYL--IRNY--PTAHPEVIPTSSVKRKGIEVLRKAILETIN 211 (212)
Q Consensus 165 ~~~~~~~-----~~~~~~--~~~~--~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l~ 211 (212)
T Consensus 145 r~~~~~~~~~~~~~ia~q~~~eei~~~c~~~~~~~~~~~~~~kl~~ff~~vie~~y 200 (202)
T cd04102 145 KESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKRY 200 (202)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 35554235553025777516678887456844003467551689999999988882