HHsearch alignment for GI: 254780484 and conserved domain: cd04109
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.46 E-value=1e-12 Score=92.23 Aligned_cols=156 Identities=16% Similarity=0.121 Sum_probs=82.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEEC-CCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 8999748998898999997389737987388841452120266555678508-964999976001011122447898888
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNN-LPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 2 KvvllGd~~VGKTSli~rf~~~~F~-~~y-~~TiG~d----~~~k~i~i~~~~~v~l~iwDtaGqe~~~~~~~~------ 69 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG-KSY-KQTIGLD----FFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDK------ 69 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC-CCC-CCCCCEE----EEEEEEEECCCCEEEEEEEECCCCCCHHHHHHH------
T ss_conf 7999999997099999999749898-877-8865578----899999987994699999969985002378999------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC-----CHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9987777664200000112235788-----75454554321025--7532212222111102468999999999975313
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGV-----KQIDQDVFSFLDKK--AVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYP 182 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~ 182 (212)
T Consensus 70 ----y~---~~a~~~ilVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~V--s~ee~~~~A~~~- 139 (215)
T cd04109 70 ----YI---YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQAN- 139 (215)
T ss_pred ----HH---HHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCC--CHHHHHHHHHHC-
T ss_conf ----99---75151377414786789998999999999985045778529999754542864776--999999999982-
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6898689998888899899999999872
Q gi|254780484|r 183 TAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 183 ~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 140 --g~~f~E~SAktg~nV~e~F~~la~~i 165 (215)
T cd04109 140 --GMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred --CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf --99899983899949899999999999