>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

Probab=99.57 E-value=1.9e-14 Score=102.17 Aligned_cols=158 Identities=13% Similarity=0.096 Sum_probs=86.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH Q ss_conf 86899974899889899999738973798738884145212026655567850896499997600101112244789888 Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212) Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212) T Consensus 7 ~~KivllGd~~VGKTsli~r~~~~~f~--~~~~~Tig~d----~~~k~i~~~~~~v~l~iwDtaG~e~~~~l~~~~~--- 77 (169) T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP--PGQGATIGVD----FMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYY--- 77 (169) T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEE----EEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHH--- T ss_conf 989999998997999999999859899--9867741247----8999999999999999998999844451557774--- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC--CHHH--HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 89987777664200000112235788--7545--4554321025753221222211110246899999999997531368 Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGV--KQID--QDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTA 184 (212) Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 184 (212) T Consensus 78 ----------~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~v~~--~~~~~~a~~---~ 142 (169) T cd04114 78 ----------RSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQ--QRAEEFSDA---Q 142 (169) T ss_pred ----------HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCH--HHHHHHHHH---C T ss_conf ----------2366459981489888999999999999986898863897311343454178899--999999998---8 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 98689998888899899999999872 Q gi|254780484|r 185 HPEVIPTSSVKRKGIEVLRKAILETI 210 (212) Q Consensus 185 ~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212) T Consensus 143 ~~~~~E~SAktg~nV~e~F~~la~~l 168 (169) T cd04114 143 DMYYLETSAKESDNVEKLFLDLACRL 168 (169) T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH T ss_conf 99999986898808899999999987

HHsearch alignment for GI: 254780484 and conserved domain: cd04114