HHsearch alignment for GI: 254780484 and conserved domain: cd04117

>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.61  E-value=1.4e-14  Score=102.88  Aligned_cols=156  Identities=14%  Similarity=0.139  Sum_probs=87.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r   31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL  110 (212)
Q Consensus        31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~  110 (212)
T Consensus         2 KIvllGd~~VGKTsli~r~~~~~f~--~~~~~Tig~~~----~~k~v~~~~~~i~l~iwDtaGqe~~~~~~~~y~-----   70 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFH--SSHISTIGVDF----KMKTIEVDGIKVRIQIWDTAGQERYQTITKQYY-----   70 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCEEEE----EEEEEEECCEEEEEEEEECCCCCCCCCCHHHHH-----
T ss_conf             8999994998589999999429989--98788720898----899999999999999997999602363558887-----


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCC--CH--HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             987777664200000112235788--75--45455432102575322122221111024689999999999753136898
Q gi|254780484|r  111 IVRYLSERSTLRCVYLLIDCRHGV--KQ--IDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHP  186 (212)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (212)
T Consensus        71 --------r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~--~~~~~~a~~~---~~  137 (161)
T cd04117          71 --------RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD--EQGNKLAKEY---GM  137 (161)
T ss_pred             --------HHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCH--HHHHHHHHHC---CC
T ss_conf             --------6416889961489889999999999999987899864999873278786277999--9999999986---99


Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             689998888899899999999872
Q gi|254780484|r  187 EVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       187 ~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       138 ~~~etSAk~~~nV~e~F~~l~~~i  161 (161)
T cd04117         138 DFFETSACTNSNIKESFTRLTELV  161 (161)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             799967789829899999999649