HHsearch alignment for GI: 254780484 and conserved domain: cd04117
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.61 E-value=1.4e-14 Score=102.88 Aligned_cols=156 Identities=14% Similarity=0.139 Sum_probs=87.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 2 KIvllGd~~VGKTsli~r~~~~~f~--~~~~~Tig~~~----~~k~v~~~~~~i~l~iwDtaGqe~~~~~~~~y~----- 70 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH--SSHISTIGVDF----KMKTIEVDGIKVRIQIWDTAGQERYQTITKQYY----- 70 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCEEEE----EEEEEEECCEEEEEEEEECCCCCCCCCCHHHHH-----
T ss_conf 8999994998589999999429989--98788720898----899999999999999997999602363558887-----
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC--CH--HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 987777664200000112235788--75--45455432102575322122221111024689999999999753136898
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGV--KQ--IDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHP 186 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (212)
T Consensus 71 --------r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~--~~~~~~a~~~---~~ 137 (161)
T cd04117 71 --------RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD--EQGNKLAKEY---GM 137 (161)
T ss_pred --------HHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCH--HHHHHHHHHC---CC
T ss_conf --------6416889961489889999999999999987899864999873278786277999--9999999986---99
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 689998888899899999999872
Q gi|254780484|r 187 EVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 187 ~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 138 ~~~etSAk~~~nV~e~F~~l~~~i 161 (161)
T cd04117 138 DFFETSACTNSNIKESFTRLTELV 161 (161)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 799967789829899999999649