HHsearch alignment for GI: 254780484 and conserved domain: cd04129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.40 E-value=1.4e-12 Score=91.45 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=83.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 86899974899889899999738973798738884145212026655567850896499997600101112244789888
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 1 r~KivllGd~~VGKTsLi~r~~~~~f-~~-~y~pTi-~~-~--~-~~~i~v~~~~v~l~iwDTaG~e~~~~~~~~~---- 69 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEF-PE-EYHPTV-FE-N--Y-VTDCRVDGKPVQLALWDTAGQEEYERLRPLS---- 69 (187)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCC-CC-CCCCCE-EE-E--E-EEEEEECCEEEEEEEEECCCCCCCCCCCCCE----
T ss_conf 91999999899768999999982989-99-878866-78-9--8-9999999999999999788870345460412----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHH--------HHHHHHHHHH
Q ss_conf 89987777664200000112235788--75454554321--025753221222211110246--------8999999999
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGV--KQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTT--------AQETLEKTKY 176 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~--------~~~~~~~~~~ 176 (212)
T Consensus 70 ------~---~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~ 140 (187)
T cd04129 70 ------Y---SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKR 140 (187)
T ss_pred ------E---CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHH
T ss_conf ------3---3885899970269866799999999999998587998899988600113411211122315578999999
Q ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9753136898689998888899899999999872
Q gi|254780484|r 177 LIRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 177 ~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 141 ~a~~--~~~~~y~EtSAk~~~nV~e~F~~~~r~~ 172 (187)
T cd04129 141 VAKE--IGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HHHH--CCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 9998--4997899968899979899999999999