HHsearch alignment for GI: 254780484 and conserved domain: cd04131
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39 E-value=2.7e-12 Score=89.85 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=82.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 2 ~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi-~~-~---~~~~~~v~~~~v~l~iwDTaGqe~~~~l~~~------ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTV-FE-N---YTASFEIDEQRIELSLWDTSGSPYYDNVRPL------ 68 (178)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCE-EE-E---EEEEEEECCEEEEEEEEECCCCHHHCCHHHH------
T ss_conf 0999999999778999999963999--99857856-88-8---8999999999999999968987421103667------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHH----------HHHHH
Q ss_conf 9987777664200000112235788--75454554321--0257532212222111102468999----------99999
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGV--KQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQET----------LEKTK 175 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~~----------~~~~~ 175 (212)
T Consensus 69 ----~y---~~a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~ 141 (178)
T cd04131 69 ----CY---PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred ----HH---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf ----73---46878999973798788999999999999986879988999985436644455667764467776899999
Q ss_pred HHHHHCCCCCCCEEEEECCCCC-CHHHHHHHHHHH
Q ss_conf 9975313689868999888889-989999999987
Q gi|254780484|r 176 YLIRNYPTAHPEVIPTSSVKRK-GIEVLRKAILET 209 (212)
Q Consensus 176 ~~~~~~~~~~~~i~~vSA~~g~-Gi~eL~~~I~~~ 209 (212)
T Consensus 142 ~~A~~--~ga~~y~EtSAktg~ngV~evF~~a~~~ 174 (178)
T cd04131 142 AIAKQ--LGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHH--CCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99997--4998999978486873989999999999