HHsearch alignment for GI: 254780484 and conserved domain: cd04131

>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39  E-value=2.7e-12  Score=89.85  Aligned_cols=158  Identities=11%  Similarity=0.076  Sum_probs=82.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG  109 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  109 (212)
T Consensus         2 ~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi-~~-~---~~~~~~v~~~~v~l~iwDTaGqe~~~~l~~~------   68 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTV-FE-N---YTASFEIDEQRIELSLWDTSGSPYYDNVRPL------   68 (178)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCE-EE-E---EEEEEEECCEEEEEEEEECCCCHHHCCHHHH------
T ss_conf             0999999999778999999963999--99857856-88-8---8999999999999999968987421103667------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHH----------HHHHH
Q ss_conf             9987777664200000112235788--75454554321--0257532212222111102468999----------99999
Q gi|254780484|r  110 LIVRYLSERSTLRCVYLLIDCRHGV--KQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQET----------LEKTK  175 (212)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~~~----------~~~~~  175 (212)
T Consensus        69 ----~y---~~a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~  141 (178)
T cd04131          69 ----CY---PDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGC  141 (178)
T ss_pred             ----HH---CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf             ----73---46878999973798788999999999999986879988999985436644455667764467776899999


Q ss_pred             HHHHHCCCCCCCEEEEECCCCC-CHHHHHHHHHHH
Q ss_conf             9975313689868999888889-989999999987
Q gi|254780484|r  176 YLIRNYPTAHPEVIPTSSVKRK-GIEVLRKAILET  209 (212)
Q Consensus       176 ~~~~~~~~~~~~i~~vSA~~g~-Gi~eL~~~I~~~  209 (212)
T Consensus       142 ~~A~~--~ga~~y~EtSAktg~ngV~evF~~a~~~  174 (178)
T cd04131         142 AIAKQ--LGAEIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             HHHHH--CCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             99997--4998999978486873989999999999