HHsearch alignment for GI: 254780484 and conserved domain: cd04133
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.53 E-value=1.1e-13 Score=97.76 Aligned_cols=159 Identities=15% Similarity=0.100 Sum_probs=85.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~~F~--~~~~pTi~~~-----~~~~i~v~~~~~~l~iwDTaG~e~~~~l~~~------ 68 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDN-----FSANVSVDGNTVNLGLWDTAGQEDYNRLRPL------ 68 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEE-----EEEEEEECCEEEEEEEEECCCCCCCCHHHHH------
T ss_conf 79999899997799999999659899--9867853589-----9999999998999999979997654246898------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC--CCCHH-HHHHHHH-HCCCCCCCCCCCCCCCCCCHHHHHH--------HHHHHHHH
Q ss_conf 99877776642000001122357--88754-5455432-1025753221222211110246899--------99999999
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRH--GVKQI-DQDVFSF-LDKKAVSYQIVLTKIDKLSPTTAQE--------TLEKTKYL 177 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~-~~~~~~~~~~v~nK~D~~~~~~~~~--------~~~~~~~~ 177 (212)
T Consensus 69 ----~y~---~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~ 141 (176)
T cd04133 69 ----SYR---GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEEL 141 (176)
T ss_pred ----HHC---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHH
T ss_conf ----726---7875799997898789999999999999986849988999986320212223333024677779999999
Q ss_pred HHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 753136898689998888899899999999872
Q gi|254780484|r 178 IRNYPTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 178 ~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 142 a~~--~~~~~y~EtSAk~~~nV~e~F~~~~~~i 172 (176)
T cd04133 142 RKQ--IGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHH--CCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 997--7997899947898809899999999998