HHsearch alignment for GI: 254780484 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.58 E-value=7.9e-15 Score=104.38 Aligned_cols=156 Identities=16% Similarity=0.177 Sum_probs=88.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 3 KivllGd~~VGKTsli~r~~~~~f~--~~y~~Ti~-~----~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~--------- 66 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIE-D----SYRKQIEVDGQQCMLEILDTAGTEQFTAMR--------- 66 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCC-C----EEEEEEEECCEEEEEEECCCCCCHHHHHHH---------
T ss_conf 9999899998899999999719598--86699542-0----699999999999999864576544555678---------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 987777664200000112235788754-----545543210257532212222111102468999999999975313689
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGVKQI-----DQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH 185 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (212)
T Consensus 67 -~~y~---~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~--~~~~~~a~~~---~ 137 (163)
T cd04136 67 -DLYI---KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR--EEGQALARQW---G 137 (163)
T ss_pred -HHHH---CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCH--HHHHHHHHHC---C
T ss_conf -9883---46876999704898899999999999999861888886787623547264078999--9999999984---9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 86899988888998999999998728
Q gi|254780484|r 186 PEVIPTSSVKRKGIEVLRKAILETIN 211 (212)
Q Consensus 186 ~~i~~vSA~~g~Gi~eL~~~I~~~l~ 211 (212)
T Consensus 138 ~~~~E~SAk~~~nV~e~F~~l~~~i~ 163 (163)
T cd04136 138 CPFYETSAKSKINVDEVFADLVRQIN 163 (163)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 98999744878058999999999639