HHsearch alignment for GI: 254780484 and conserved domain: cd04152

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.61  E-value=1.6e-14  Score=102.70  Aligned_cols=161  Identities=15%  Similarity=0.129  Sum_probs=89.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG  109 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  109 (212)
T Consensus         4 ~kIvilG~~~~GKTsil~r~~~~~f-~~--~~pTiG~~--~~~~~-~~~~~~~~v~l~iwDtaGqe~~r~l~~~Y~----   73 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEF-VN--TVPTKGFN--TEKIK-VSLGNSKGITFHFWDVGGQEKLRPLWKSYT----   73 (183)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC-CC--CCCCCCEE--EEEEE-EECCCCCEEEEEEEECCCCCCCCEEHHHHH----
T ss_conf             9999999999988999999964986-77--68703557--89999-961678667999997898734510087674----


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCHHH-----HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99877776642000001122357887545-----4554321025753221222211110246899999999997531368
Q gi|254780484|r  110 LIVRYLSERSTLRCVYLLIDCRHGVKQID-----QDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTA  184 (212)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  184 (212)
T Consensus        74 ---------r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~-l~~~~~~~  143 (183)
T cd04152          74 ---------RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLA-LHELSAST  143 (183)
T ss_pred             ---------CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH-HHHHHCCC
T ss_conf             ---------67867899996776889999999999997321237962999986677766878899999971-99986669


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             98689998888899899999999872
Q gi|254780484|r  185 HPEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       185 ~~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       144 ~~~i~~tSA~tG~gI~e~f~~L~~~i  169 (183)
T cd04152         144 PWHVQPACAIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             98999727997969899999999999