>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

Probab=99.57 E-value=1.6e-14 Score=102.64 Aligned_cols=158 Identities=15% Similarity=0.194 Sum_probs=91.9 Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHH Q ss_conf 88766868999748998898999997389737987388841452120266555678508964999976001011122447 Q gi|254780484|r 24 LPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKN 103 (212) Q Consensus 24 ~P~~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~ 103 (212) T Consensus 11 ~~~k~-~KililG~~~sGKTsil~~l~~~~~-~~~--~pT~G--~~------~~~i~~~~~~~~iwD~~G~e~~~~~~~~ 78 (174) T cd04153 11 FPRKE-YKVIIVGLDNAGKTTILYQFLLGEV-VHT--SPTIG--SN------VEEIVYKNIRFLMWDIGGQESLRSSWNT 78 (174) T ss_pred CCCCE-EEEEEECCCCCCHHHHHHHHHCCCC-CCC--CCCCC--CC------EEEEEECCEEEEEEECCCCCCCCCHHHH T ss_conf 58977-9999998999988999999973992-771--67236--04------6999978889999989998656622677 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHHHH---HHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 89888899877776642000001122357887--545455---4321025753221222211110246899999999997 Q gi|254780484|r 104 VDSWGGLIVRYLSERSTLRCVYLLIDCRHGVK--QIDQDV---FSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLI 178 (212) Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~ 178 (212) T Consensus 79 ----------y---~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~--l 143 (174) T cd04153 79 ----------Y---YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLG--L 143 (174) T ss_pred ----------H---HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH--H T ss_conf ----------7---057753799997678889999999999997261016982899995555655789999999974--7 Q ss_pred HHCCCCCCCEEEEECCCCCCHHHHHHHHHH Q ss_conf 531368986899988888998999999998 Q gi|254780484|r 179 RNYPTAHPEVIPTSSVKRKGIEVLRKAILE 208 (212) Q Consensus 179 ~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~ 208 (212) T Consensus 144 ~~~~~~~~~~~~~SAktG~Gv~e~f~wLa~ 173 (174) T cd04153 144 TSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174) T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHC T ss_conf 776359809999668589198999999866

HHsearch alignment for GI: 254780484 and conserved domain: cd04153