HHsearch alignment for GI: 254780484 and conserved domain: cd04163
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.98 E-value=7.4e-31 Score=196.55 Aligned_cols=165 Identities=22% Similarity=0.316 Sum_probs=122.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 4 ~~V~ivG~pN~GKSsL~N~L~~~~-~a~vs~~~gtTr~~------~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-----~ 71 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNR------IRGIYTDDDAQIIFVDTPGIHKPKKKLGE-----R 71 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCEEECC------CEEEEEECCEEEEEEECCCCCCCHHHHHH-----H
T ss_conf 689999999999999999995897-03323889826344------23689849978999958986651456778-----9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99877776642000001122357887545455432102575322122221111024689999999999753136898689
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVI 189 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 189 (212)
T Consensus 72 ~~~~~~~~l~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~~~~~~~~---~~~~~~~~-~~~~~~vi 147 (168)
T cd04163 72 MVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLL---PLLEKLKE-LGPFAEIF 147 (168)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEECCCHHHHH---HHHHHHHH-HCCCCCEE
T ss_conf 999999865136558999978989866779999999980998599997887047877899---99999996-18999689
Q ss_pred EEECCCCCCHHHHHHHHHHHH
Q ss_conf 998888899899999999872
Q gi|254780484|r 190 PTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 190 ~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 148 ~iSA~~g~Gid~L~~~i~~~L 168 (168)
T cd04163 148 PISALKGENVDELLEEIVKYL 168 (168)
T ss_pred EEECCCCCCHHHHHHHHHHHC
T ss_conf 997778969999999999539