HHsearch alignment for GI: 254780484 and conserved domain: cd04164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.96 E-value=2.1e-28 Score=182.42 Aligned_cols=155 Identities=24% Similarity=0.318 Sum_probs=114.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 2 ~~ValvG~pN~GKStL~N~l~g~~-~~ivs~~pgtTrd~------~~~~~~~~~~~i~l~DTpG~~~~~~~~e~~~~--- 71 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRD-RAIVSDIAGTTRDV------IEESIDIGGIPVRLIDTAGIRETEDEIEKIGI--- 71 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCEEEEC------CEEEEEECCEEEEEEECCCCCCCCCHHHHHHH---
T ss_conf 799998899998999999996897-33432889847863------26789539988999726775444578999999---
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99877776642000001122357887545455432102575322122221111024689999999999753136898689
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVI 189 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 189 (212)
T Consensus 72 --~~~~~~i~~aDlil~vvD~~~~~~~~~~~~~~~~--~~~p~i~v~NKiDl~~~~~~~~~------------~~~~~vi 135 (157)
T cd04164 72 --ERAREAIEEADLVLFVIDASRGLDEEDLEILELP--ADKPIIVVLNKSDLLPDSELLSL------------LAGKPII 135 (157)
T ss_pred --HHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHH--CCCCEEEEEECCCCCCCHHHHHH------------CCCCCEE
T ss_conf --9998630157679999889877888899999851--47998999967601486667985------------2899779
Q ss_pred EEECCCCCCHHHHHHHHHHHH
Q ss_conf 998888899899999999872
Q gi|254780484|r 190 PTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 190 ~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 136 ~ISA~~g~Gi~~L~~~I~e~a 156 (157)
T cd04164 136 AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEECCCCCCHHHHHHHHHHHC
T ss_conf 998527959999999999972