HHsearch alignment for GI: 254780484 and conserved domain: cd04165
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.66 E-value=3.4e-15 Score=106.48 Aligned_cols=167 Identities=19% Similarity=0.272 Sum_probs=109.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCE-----EEE-------CCCCCEEEECC------------------EEEEEEEEEEE
Q ss_conf 8999748998898999997389737-----987-------38884145212------------------02665556785
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNL-----ART-------SNAPGRTQHLN------------------FFVPKDFSNLK 80 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~-----a~~-------~~~p~tt~~~~------------------~~~~~~~~~~~ 80 (212)
T Consensus 1 Rv~v~GhVD~GKSTL~G~Lt~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEEC
T ss_conf 98999485884889999985677422210677787761899972654411565540101453202134765442201213
Q ss_pred ECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 08964999976001011122447898888998777766420000011223578875454554321025753221222211
Q gi|254780484|r 81 NNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKID 160 (212)
Q Consensus 81 ~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D 160 (212)
T Consensus 81 ~~~k~it~iD~pGH~~y~kt--~i---------~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiD 149 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKT--TL---------FGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKID 149 (224)
T ss_pred CCCCEEEEEECCCHHHHHHH--HH---------HHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 67867999978873999999--99---------87635568989999317889779999999999983999899998977
Q ss_pred CCCHHHHHHHHHHHHHHHHHC-----------------------CCCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 110246899999999997531-----------------------368986899988888998999999998
Q gi|254780484|r 161 KLSPTTAQETLEKTKYLIRNY-----------------------PTAHPEVIPTSSVKRKGIEVLRKAILE 208 (212)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~vSA~~g~Gi~eL~~~I~~ 208 (212)
T Consensus 150 l~~~~~l~~~~~~i~~~lk~p~~~k~p~~v~~~~d~~~~a~~~~~~~ivPIf~vS~VtG~Gi~~L~~fL~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 68989999999999999704475568702168588999986488677746799765898799999999987