HHsearch alignment for GI: 254780484 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.57 E-value=2.1e-13 Score=96.21 Aligned_cols=167 Identities=20% Similarity=0.263 Sum_probs=105.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC----CEEEECCCCCEE-------EECCEEEEEEEEEE-----EECCCEEEEEECCHH
Q ss_conf 89997489988989999973897----379873888414-------52120266555678-----508964999976001
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRK----NLARTSNAPGRT-------QHLNFFVPKDFSNL-----KNNLPAMALVDMPGY 94 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~----~~a~~~~~p~tt-------~~~~~~~~~~~~~~-----~~~~~~~~~~DtpG~ 94 (212)
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC------CCHHH--
Q ss_conf 0111224478988889987777664200000112235788754545543210257532212222111------10246--
Q gi|254780484|r 95 GYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDK------LSPTT-- 166 (212)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~------~~~~~-- 166 (212)
T Consensus 82 ~dF~~-------------ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRLi~el~l~p~day 148 (213)
T cd04167 82 VNFMD-------------EVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAY 148 (213)
T ss_pred HHHHH-------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCHHHHH
T ss_conf 41799-------------99988863776799998788875779999999998699989999882343144069989999
Q ss_pred --HHHHHHHHHHHHHHCC--------CCCCCEEEEECCCCC--------CHHHHHHHHHHHH
Q ss_conf --8999999999975313--------689868999888889--------9899999999872
Q gi|254780484|r 167 --AQETLEKTKYLIRNYP--------TAHPEVIPTSSVKRK--------GIEVLRKAILETI 210 (212)
Q Consensus 167 --~~~~~~~~~~~~~~~~--------~~~~~i~~vSA~~g~--------Gi~eL~~~I~~~l 210 (212)
T Consensus 149 ~~~~~ii~~vn~~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~~fa~~y~l~d~i~~~i 210 (213)
T cd04167 149 FKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEECCCCCCEEEEEECCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf 98999999999999970787351656887969999700052123623211689999999638