HHsearch alignment for GI: 254780484 and conserved domain: cd04177

>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57  E-value=1.1e-14  Score=103.48  Aligned_cols=156  Identities=18%  Similarity=0.227  Sum_probs=87.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r   31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL  110 (212)
Q Consensus        31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~  110 (212)
T Consensus         3 KivlvGd~~VGKTsli~rf~~~~f~--~~y~pTi~-~----~~~k~i~i~~~~~~l~iwDtaG~e~~~~~~~~-------   68 (168)
T cd04177           3 KIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIE-D----SYRKQVEIDGRQCDLEILDTAGTEQFTAMREL-------   68 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCC-C----EEEEEEEECCEEEEEEEEECCCCCCCCCCHHH-------
T ss_conf             9999899997799999999619389--86588333-1----59999999999999999827886233345154-------


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCC--HH---HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9877776642000001122357887--54---545543210257532212222111102468999999999975313689
Q gi|254780484|r  111 IVRYLSERSTLRCVYLLIDCRHGVK--QI---DQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH  185 (212)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  185 (212)
T Consensus        69 ---~~---~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~~--~e~~~~a~~~--~~  138 (168)
T cd04177          69 ---YI---KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR--EDGVSLSQQW--GN  138 (168)
T ss_pred             ---HH---CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCH--HHHHHHHHHC--CC
T ss_conf             ---51---26866798536898889999999999999851788874898873146121376899--9999999974--99


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             8689998888899899999999872
Q gi|254780484|r  186 PEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       186 ~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       139 ~~~~E~SAk~~~nV~e~F~~l~~~i  163 (168)
T cd04177         139 VPFYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             7799962487846899999999999