HHsearch alignment for GI: 254780484 and conserved domain: cd04177
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.57 E-value=1.1e-14 Score=103.48 Aligned_cols=156 Identities=18% Similarity=0.227 Sum_probs=87.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 89997489988989999973897379873888414521202665556785089649999760010111224478988889
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGL 110 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 110 (212)
T Consensus 3 KivlvGd~~VGKTsli~rf~~~~f~--~~y~pTi~-~----~~~k~i~i~~~~~~l~iwDtaG~e~~~~~~~~------- 68 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIE-D----SYRKQVEIDGRQCDLEILDTAGTEQFTAMREL------- 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCC-C----EEEEEEEECCEEEEEEEEECCCCCCCCCCHHH-------
T ss_conf 9999899997799999999619389--86588333-1----59999999999999999827886233345154-------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCC--HH---HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9877776642000001122357887--54---545543210257532212222111102468999999999975313689
Q gi|254780484|r 111 IVRYLSERSTLRCVYLLIDCRHGVK--QI---DQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH 185 (212)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (212)
T Consensus 69 ---~~---~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~~--~e~~~~a~~~--~~ 138 (168)
T cd04177 69 ---YI---KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR--EDGVSLSQQW--GN 138 (168)
T ss_pred ---HH---CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCH--HHHHHHHHHC--CC
T ss_conf ---51---26866798536898889999999999999851788874898873146121376899--9999999974--99
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8689998888899899999999872
Q gi|254780484|r 186 PEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 186 ~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 139 ~~~~E~SAk~~~nV~e~F~~l~~~i 163 (168)
T cd04177 139 VPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 7799962487846899999999999