HHsearch alignment for GI: 254780484 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.20  E-value=0.0025  Score=38.24  Aligned_cols=154  Identities=19%  Similarity=0.124  Sum_probs=69.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC-----CCEEEECCCCCEEE----------ECCEEEEEEEEE-------------EEEC
Q ss_conf             8999748998898999997389-----73798738884145----------212026655567-------------8508
Q gi|254780484|r   31 EIAFSGRSNVGKSSLINILVNR-----KNLARTSNAPGRTQ----------HLNFFVPKDFSN-------------LKNN   82 (212)
Q Consensus        31 ~VaivG~~NvGKSSLiNaL~g~-----~~~a~~~~~p~tt~----------~~~~~~~~~~~~-------------~~~~   82 (212)
T Consensus         3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~   82 (196)
T pfam00448         3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAE   82 (196)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             99998999998899999999999977992899975877688999999999863981781487778789999999998846


Q ss_pred             CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             96499997600101112244789888899877776642000001122357887545455432102575322122221111
Q gi|254780484|r   83 LPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKL  162 (212)
Q Consensus        83 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~  162 (212)
T Consensus        83 ~~D~IlIDTaGr~~~d--~~~~~el~~~~~~-----~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~~~I~TKlDet  153 (196)
T pfam00448        83 NYDVVLVDTAGRLQND--KNLMDELKKIKRV-----IAPDEVLLVLDATTGQN--ALNQAKAFNEAVGITGVILTKLDGD  153 (196)
T ss_pred             CCCEEEEECCCCCCCC--HHHHHHHHHHHHH-----CCCCCEEEEEECCCCCC--HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             8999999899987476--7789999999852-----28730289985677821--3789998760047762688840578


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf             024689999999999753136898689998888899899999
Q gi|254780484|r  163 SPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRK  204 (212)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~  204 (212)
T Consensus       154 ~~~G~--~l~~~~~-------~~~Pi~~~t--~Gq~v~Dl~~  184 (196)
T pfam00448       154 AKGGA--ALSIAAE-------TGKPIKFIG--VGEKIDDLEP  184 (196)
T ss_pred             CCCCH--HHHHHHH-------HCCCEEEEE--CCCCHHHCCC
T ss_conf             87529--9989999-------896979996--7998120634