HHsearch alignment for GI: 254780484 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=97.20 E-value=0.0025 Score=38.24 Aligned_cols=154 Identities=19% Similarity=0.124 Sum_probs=69.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCEEEECCCCCEEE----------ECCEEEEEEEEE-------------EEEC
Q ss_conf 8999748998898999997389-----73798738884145----------212026655567-------------8508
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNR-----KNLARTSNAPGRTQ----------HLNFFVPKDFSN-------------LKNN 82 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~-----~~~a~~~~~p~tt~----------~~~~~~~~~~~~-------------~~~~ 82 (212)
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~ 82 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAE 82 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998999998899999999999977992899975877688999999999863981781487778789999999998846
Q ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 96499997600101112244789888899877776642000001122357887545455432102575322122221111
Q gi|254780484|r 83 LPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKL 162 (212)
Q Consensus 83 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~ 162 (212)
T Consensus 83 ~~D~IlIDTaGr~~~d--~~~~~el~~~~~~-----~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~~~I~TKlDet 153 (196)
T pfam00448 83 NYDVVLVDTAGRLQND--KNLMDELKKIKRV-----IAPDEVLLVLDATTGQN--ALNQAKAFNEAVGITGVILTKLDGD 153 (196)
T ss_pred CCCEEEEECCCCCCCC--HHHHHHHHHHHHH-----CCCCCEEEEEECCCCCC--HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8999999899987476--7789999999852-----28730289985677821--3789998760047762688840578
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
Q ss_conf 024689999999999753136898689998888899899999
Q gi|254780484|r 163 SPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRK 204 (212)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~ 204 (212)
T Consensus 154 ~~~G~--~l~~~~~-------~~~Pi~~~t--~Gq~v~Dl~~ 184 (196)
T pfam00448 154 AKGGA--ALSIAAE-------TGKPIKFIG--VGEKIDDLEP 184 (196)
T ss_pred CCCCH--HHHHHHH-------HCCCEEEEE--CCCCHHHCCC
T ss_conf 87529--9989999-------896979996--7998120634