HHsearch alignment for GI: 254780484 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.56 E-value=2.4e-06 Score=55.59 Aligned_cols=162 Identities=17% Similarity=0.124 Sum_probs=87.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEE-EECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 8999748998898999997389737987388841452120266555678-508964999976001011122447898888
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNL-KNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~-~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 1 KiLLMG~~~sGKTSi~~vIF~~~~-p~d------T~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~~~---~- 69 (230)
T pfam04670 1 KVLLMGLRGSGKSSMRSIIFSNYS-PRD------TLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTR---Q- 69 (230)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC-HHH------HCCCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCCC---C-
T ss_conf 978756899987776999867998-214------12025777767787741687368999769835354412002---2-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH------HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-
Q ss_conf 9987777664200000112235788754545543------210257532212222111102468999999999975313-
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFS------FLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYP- 182 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~- 182 (212)
T Consensus 70 ----~e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d~r~~~~~~~~~~i~~~~~ 145 (230)
T pfam04670 70 ----KEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSEDERKEIFEDRKEEIIEEIE 145 (230)
T ss_pred ----HHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf ----3547644788999996888609999999999999999839998899999603588866789999999999999876
Q ss_pred ---CCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf ---68986899988888998999999998
Q gi|254780484|r 183 ---TAHPEVIPTSSVKRKGIEVLRKAILE 208 (212)
Q Consensus 183 ---~~~~~i~~vSA~~g~Gi~eL~~~I~~ 208 (212)
T Consensus 146 ~~~~~~i~~~~TSI~D~S-ly~A~S~IVq 173 (230)
T pfam04670 146 DFGIEDLTFFLTSIWDHS-LYKAWSKIVQ 173 (230)
T ss_pred HCCCCCEEEEEEECCHHH-HHHHHHHHHH
T ss_conf 568875388851012116-9999999999