HHsearch alignment for GI: 254780484 and conserved domain: smart00053
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.64 E-value=2.7e-07 Score=61.09 Aligned_cols=137 Identities=19% Similarity=0.157 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEE--------------------------------
Q ss_conf 686899974899889899999738973798738884145212026655--------------------------------
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKD-------------------------------- 75 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~-------------------------------- 75 (212)
T Consensus 25 ~LPqiVVvGdQSsGKSSvLEaitGi~FlPr~~g~--cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 102 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDR 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC--EECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8984899888787589999998788755568972--76440699973388651247743786348989999999998875
Q ss_pred -----------E---EEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCC-CCHHHH
Q ss_conf -----------5---6785089649999760010111224478988889987777664200-00011223578-875454
Q gi|254780484|r 76 -----------F---SNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLR-CVYLLIDCRHG-VKQIDQ 139 (212)
Q Consensus 76 -----------~---~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 139 (212)
T Consensus 103 ~~g~~~~~s~~~l~lei~gP~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~anq~~l 182 (240)
T smart00053 103 VTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDAL 182 (240)
T ss_pred HCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 32678876788559999479998854414754124678998567999999999998479880699984078567661999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 554321025753221222211110246
Q gi|254780484|r 140 DVFSFLDKKAVSYQIVLTKIDKLSPTT 166 (212)
Q Consensus 140 ~~~~~~~~~~~~~~~v~nK~D~~~~~~ 166 (212)
T Consensus 183 ~lAr~~Dp~g~RTiGVlTKpDl~~~gs 209 (240)
T smart00053 183 KLAKEVDPQGERTIGVITKLDLMDEGT 209 (240)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf 999971999982899973533457770