HHsearch alignment for GI: 254780484 and conserved domain: smart00177

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.55  E-value=2.7e-14  Score=101.27  Aligned_cols=160  Identities=13%  Similarity=0.163  Sum_probs=93.1

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             76686899974899889899999738973798738884145212026655567850896499997600101112244789
Q gi|254780484|r   26 KAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD  105 (212)
Q Consensus        26 ~~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~  105 (212)
T Consensus        10 ~kk~~kililG~~~~GKTsil~~l~~~~~~---~~~pTvg----~----~~~~~~~~~~~l~iwD~~Gqe~~r~l~~~--   76 (175)
T smart00177       10 GNKEMRILMVGLDAAGKTTILYKLKLGESV---TTIPTIG----F----NVETVTYKNISFTVWDVGGQDKIRPLWRH--   76 (175)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHCCCCC---CCCCCCC----C----EEEEEEECCEEEEEEECCCCCCCCHHHHH--
T ss_conf             788899999988999989999999659977---7579788----1----07999989899999989998545536777--


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--HHHHHHHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             888899877776642000001122357887--54545543---2102575322122221111024689999999999753
Q gi|254780484|r  106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVK--QIDQDVFS---FLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN  180 (212)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~  180 (212)
T Consensus        77 --------Y---y~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l--~~  143 (175)
T smart00177       77 --------Y---YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGL--HS  143 (175)
T ss_pred             --------H---CCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCH--HH
T ss_conf             --------5---5776189999866877899999999999963153169869999845667678899999999686--65


Q ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             1368986899988888998999999998728
Q gi|254780484|r  181 YPTAHPEVIPTSSVKRKGIEVLRKAILETIN  211 (212)
Q Consensus       181 ~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l~  211 (212)
T Consensus       144 ~~~~~~~i~~~SA~tG~GI~e~f~wL~~~ik  174 (175)
T smart00177      144 IRDRNWYIQPTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             HCCCCEEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             4079759998268789698999999999844