HHsearch alignment for GI: 254780484 and conserved domain: smart00178
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.38 E-value=3.1e-12 Score=89.48 Aligned_cols=157 Identities=22% Similarity=0.211 Sum_probs=92.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 86899974899889899999738973798738884145212026655567850896499997600101112244789888
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWG 108 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~ 108 (212)
T Consensus 17 e~~ililGLd~aGKTTil~~lk~~~~-~~~~PT~g~~----------~e~~~~~~~~~~~wDlgG~~~~R------~lW~ 79 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRL-AQHQPTQHPT----------SEELAIGNIKFTTFDLGGHQQAR------RLWK 79 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCC----------EEEEEECCEEEEEEECCCCHHHH------HHHH
T ss_conf 14799996588988999999806997-5305787886----------48999999999999889877788------9999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHH--H---HHHHHHCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHH
Q ss_conf 899877776642000001122357887545--4---554321025753221222211110---24689999999999753
Q gi|254780484|r 109 GLIVRYLSERSTLRCVYLLIDCRHGVKQID--Q---DVFSFLDKKAVSYQIVLTKIDKLS---PTTAQETLEKTKYLIRN 180 (212)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~v~nK~D~~~---~~~~~~~~~~~~~~~~~ 180 (212)
T Consensus 80 ~Y-------y~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L-~~~~~~ 151 (184)
T smart00178 80 DY-------FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGL-TNTTGS 151 (184)
T ss_pred HH-------HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCC-HHHHCC
T ss_conf 88-------2167589999726868899999999999864676559709999975677789999999988195-123265
Q ss_pred CC---CCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 13---6898689998888899899999999872
Q gi|254780484|r 181 YP---TAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 181 ~~---~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 152 ~~~~~~r~~~i~~~SA~tG~Gl~egl~WLs~~i 184 (184)
T smart00178 152 KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 576677631999735607978699999998409