RPSBLAST alignment for GI: 254780484 and conserved domain: cd04164
>gnl|CDD|133364 cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 157
Score = 44.8 bits (107), Expect = 2e-05
Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 56/191 (29%)
Query: 36 GRSNVGKSSLINILVNRKNLARTSNAPGRT-----QHLNFFVPKDFSNLKNNLPAMALVD 90
G+ NVGKSSL+N L R + A S+ G T + ++ +P + L+D
Sbjct: 8 GKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDI----------GGIP-VRLID 55
Query: 91 MPGY----------GYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQD 140
G G RA R E + L +ID G+ + D +
Sbjct: 56 TAGIRETEDEIEKIGIERA-------------REAIEEADLVL--FVIDASRGLDEEDLE 100
Query: 141 VFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIE 200
+ K +VL K D L + L +I S+ +G++
Sbjct: 101 ILELPADK--PIIVVLNKSDLLPDSELLSLLAG------------KPIIAISAKTGEGLD 146
Query: 201 VLRKAILETIN 211
L++A+LE
Sbjct: 147 ELKEALLELAG 157