RPSBLAST alignment for GI: 254780484 and conserved domain: cd04164

>gnl|CDD|133364 cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 157
 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 56/191 (29%)

Query: 36  GRSNVGKSSLINILVNRKNLARTSNAPGRT-----QHLNFFVPKDFSNLKNNLPAMALVD 90
           G+ NVGKSSL+N L  R + A  S+  G T     + ++             +P + L+D
Sbjct: 8   GKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDI----------GGIP-VRLID 55

Query: 91  MPGY----------GYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQD 140
             G           G  RA             R   E + L     +ID   G+ + D +
Sbjct: 56  TAGIRETEDEIEKIGIERA-------------REAIEEADLVL--FVIDASRGLDEEDLE 100

Query: 141 VFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIE 200
           +      K     +VL K D L  +     L                +I  S+   +G++
Sbjct: 101 ILELPADK--PIIVVLNKSDLLPDSELLSLLAG------------KPIIAISAKTGEGLD 146

Query: 201 VLRKAILETIN 211
            L++A+LE   
Sbjct: 147 ELKEALLELAG 157