BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780484|ref|YP_003064897.1| GTPase EngB [Candidatus
Liberibacter asiaticus str. psy62]
         (212 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780484|ref|YP_003064897.1| GTPase EngB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 212

 Score =  437 bits (1124), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/212 (100%), Positives = 212/212 (100%)

Query: 1   MVSHTIFTKSAWIFLRGVPEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSN 60
           MVSHTIFTKSAWIFLRGVPEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSN
Sbjct: 1   MVSHTIFTKSAWIFLRGVPEIGLLPKAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSN 60

Query: 61  APGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERST 120
           APGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERST
Sbjct: 61  APGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGGLIVRYLSERST 120

Query: 121 LRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN 180
           LRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN
Sbjct: 121 LRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRN 180

Query: 181 YPTAHPEVIPTSSVKRKGIEVLRKAILETINY 212
           YPTAHPEVIPTSSVKRKGIEVLRKAILETINY
Sbjct: 181 YPTAHPEVIPTSSVKRKGIEVLRKAILETINY 212


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 41.6 bits (96), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 21/134 (15%)

Query: 32  IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDM 91
           IA  G  NVGKS+L N LV +K +A   N PG T+       + +     N     +VD 
Sbjct: 5   IAIVGAPNVGKSTLFNRLVKKK-MAVVGNHPGITRD------RLYGQAIINGVIFNIVDT 57

Query: 92  PGYGYARAPKKNVDSWGGLIVRYLSERSTL-----RCVYLLIDCRHGVKQIDQDVFSFLD 146
            G     A  KN       I + +++++ L       +  LID + G+   D  + SFL 
Sbjct: 58  AGI----ADGKNCS-----IAKQMNDQTELAINEAHLILFLIDSKAGITPYDHAITSFLR 108

Query: 147 KKAVSYQIVLTKID 160
           KK +   IV  K+D
Sbjct: 109 KKNIPIIIVSNKMD 122



 Score = 28.5 bits (62), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 27  AGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNA 61
           + P  IA  GR NVGKS+LIN L+    L   S +
Sbjct: 201 SKPLRIAVVGRPNVGKSTLINRLLGYNRLLTGSQS 235


>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 311

 Score = 34.7 bits (78), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 18/150 (12%)

Query: 32  IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDM 91
           +A  G +N GKS+L+N  V     A+ S    + Q     V    S  ++ +     +D 
Sbjct: 25  VALVGATNAGKSTLVNRFVG----AKVSIVTHKVQTTRSIVRGIVSEKESQI---VFLDT 77

Query: 92  PGYGYARAPKKNVDSWGGLIVRYLSERSTLR---CVYLLIDCRHGVKQIDQDVFSFLDKK 148
           PG   A+      DS+  L++R     ST++    V L++D    +K    D+   + K+
Sbjct: 78  PGIFNAK------DSYHKLMIRL--SWSTIKHADIVCLVVDSHRELKVNIHDLLKEIAKR 129

Query: 149 AVSYQIVLTKIDKLSPTTAQETLEKTKYLI 178
           +    ++L KID + P    E  E    L+
Sbjct: 130 SSRLILILNKIDCVKPERLLEQAEIANKLV 159


>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 440

 Score = 30.4 bits (67), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 32  IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQ 66
           I   G SN GKSSL N L  +K++A  ++ PG T+
Sbjct: 222 IVILGHSNAGKSSLFNALA-KKDVAIVTDIPGTTR 255


>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 348

 Score = 23.5 bits (49), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)

Query: 119 STLRCVYLLIDCRHGVKQIDQDVFSFLDKK 148
           S LRC      CR GV+ +  ++FS   +K
Sbjct: 202 SGLRCS---DSCRAGVQHLQNNIFSIKTQK 228


>gi|254780448|ref|YP_003064861.1| hypothetical protein CLIBASIA_01665 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 311

 Score = 23.5 bits (49), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 17  GVPEIGLLPKAGPPEIAFSGRSN 39
           G+   G+L +  PPE+ FS   N
Sbjct: 289 GIKAEGILSRNAPPELHFSSYVN 311


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 21.9 bits (45), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 5   TIFTKSAWIFLRGVP---EIGLLPKAGPPEIAFSGRSNVGKSSLINILV 50
           T+F    + + +G P    I L  K+G    A  G S  GKS++IN+L+
Sbjct: 353 TVFRDVFFSYKQGHPVLSGINLCFKSGKMT-ALVGPSGSGKSTIINLLM 400


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,945
Number of Sequences: 1233
Number of extensions: 5553
Number of successful extensions: 15
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 212
length of database: 328,796
effective HSP length: 70
effective length of query: 142
effective length of database: 242,486
effective search space: 34433012
effective search space used: 34433012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)