HHsearch alignment for GI: 254780485 and conserved domain: COG0635
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism].
Probab=99.43 E-value=3.3e-11 Score=94.76 Aligned_cols=201 Identities=20% Similarity=0.345 Sum_probs=139.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCC--
Q ss_conf 5699986453078683423212433547775---6410006857999999999964-----98389973036888744--
Q gi|254780485|r 51 HIQLSKLLNIKTGGCPENCGYCNQSVHNKSK---LKASKLINVDQVLKEAKNAKEN-----GATRYCMGAAWREPKER-- 120 (328)
Q Consensus 51 ~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~---~~~~~~~~~Eei~~~a~~~~~~-----G~~~~~l~~~~~~~~~~-- 120 (328)
T Consensus 34 ~~slYiHiP----FC~~~C~YC~fn~~~~~~~~~~~~Y~----~aL~~Ei~~~~~~~~~~~~v~ti~~GGG--TPslL~~ 103 (416)
T COG0635 34 PLSLYIHIP----FCVSKCPYCDFNSHVTKRGQPVDEYL----DALLEEIELVAALLGGQREVKTIYFGGG--TPSLLSP 103 (416)
T ss_pred CCEEEEECC----CHHCCCCCCCCEEEECCCCCHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEEECCC--CCCCCCH
T ss_conf 736888723----21250887888545347777399999----9999999998862278872789997698--3267799
Q ss_pred -CHHHHHHHHHHHCC-C--CCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf -28999998876213-6--883241--025699999998741576069751343-7777320588889899999999999
Q gi|254780485|r 121 -DLSIIVDMIKGVKS-L--GLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVR 193 (328)
Q Consensus 121 -~~~~~~e~i~~i~~-~--~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~ 193 (328)
T Consensus 104 ~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~ 183 (416)
T COG0635 104 EQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELAR 183 (416)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999972357888279995088866899999999829877986014599899997478887899999999998
Q ss_pred HCCC-CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC-----CCHHHHHHHHHHHH
Q ss_conf 8798-5577078668-989999999999997408888602054112048741244568-----79899999999999
Q gi|254780485|r 194 KSGI-KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK-----VDPIEHVRIISVAR 263 (328)
Q Consensus 194 ~~G~-~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~-----~~~~e~lr~iAi~R 263 (328)
T Consensus 184 ~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~ 258 (416)
T COG0635 184 KAGFTSINIDLIYGLPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVE 258 (416)
T ss_pred HCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6389747887243899999999999999998349--98786462686588567662335778998689999999999