HHsearch alignment for GI: 254780485 and conserved domain: COG1533
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair].
Probab=98.03 E-value=0.0008 Score=45.28 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=92.8
Q ss_pred EEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHH-C--CCEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6453078683423212433547-775641000685799999999996-4--98389973036888744289999988762
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHN-KSKLKASKLINVDQVLKEAKNAKE-N--GATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~-~~~~~~~~~~~~Eei~~~a~~~~~-~--G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328)
T Consensus 32 ~inp-y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TD--pyqp~E~~~~ltR~i 108 (297)
T COG1533 32 TLNP-YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTD--PYQPIEKEYRLTRKI 108 (297)
T ss_pred ECCC-CCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCC--CCCCHHHHHHHHHHH
T ss_conf 3377-4787788841336201466567860554015699999988752467855999854688--885647787899999
Q ss_pred ----CCCCCCEEEEC-CCC---CHHHHHHHHCCCCCEEEEECCCC-HHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf ----13688324102-569---99999987415760697513437-7773205888-89899999999999879855770
Q gi|254780485|r 133 ----KSLGLETCMTL-GML---SFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTT-HTFEDRLQTLENVRKSGIKVCCG 202 (328)
Q Consensus 133 ----~~~~~~i~~~~-g~~---~~~~~~~Lk~aG~~~~~~~let~-~~~~~~~~~~-~~~~~~l~~~~~a~~~G~~~~sg 202 (328)
T Consensus 109 lei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v- 187 (297)
T COG1533 109 LEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGL- 187 (297)
T ss_pred HHHHHHCCCCEEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEE-
T ss_conf 9998853996799977741010278998401126518999951684888986589996989999999999987984899-
Q ss_pred EEECC---CCCHHHHHHHHHHHHHCCC
Q ss_conf 78668---9899999999999974088
Q gi|254780485|r 203 GILGL---GEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 203 ~l~G~---gEt~eeri~~l~~lr~l~~ 226 (328)
T Consensus 188 -~v~PIiP~~~d~e~e~~l~~~~~ag~ 213 (297)
T COG1533 188 -FVAPIIPGLNDEELERILEAAAEAGA 213 (297)
T ss_pred -EEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf -98553078875889999999997577