HHsearch alignment for GI: 254780485 and conserved domain: COG2108
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only].
Probab=99.09 E-value=2.1e-09 Score=82.66 Aligned_cols=212 Identities=18% Similarity=0.169 Sum_probs=123.6
Q ss_pred HHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 88628985699986453078683423212433547775641----00068579999999999649838997303688874
Q gi|254780485|r 44 RKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKA----SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE 119 (328)
Q Consensus 44 r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~----~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~ 119 (328)
T Consensus 22 ~~C~~G~Kl----VlFv-TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Gas---i-TGGd-P-l 90 (353)
T COG2108 22 RLCVLGGKL----VLFV-TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGAS---I-TGGD-P-L 90 (353)
T ss_pred HHHHCCCCE----EEEE-ECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCC---C-CCCC-H-H
T ss_conf 777258716----9999-5566898525768777648863311563147578899999972466653---3-2787-4-8
Q ss_pred CCHHHHHHHHHHHCCCC---CCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 42899999887621368---83241--02569999999874157606975134377773205888898999999999998
Q gi|254780485|r 120 RDLSIIVDMIKGVKSLG---LETCM--TLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK 194 (328)
Q Consensus 120 ~~~~~~~e~i~~i~~~~---~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328)
T Consensus 91 ~~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~--------~~~~~~~e~~i~~l~~A~~ 162 (353)
T COG2108 91 LEIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP--------RPGSKSSEKYIENLKIAKK 162 (353)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCC--------CCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999998763532059984066568889999998679875994689--------7211231899999999998
Q ss_pred CCCCCCCEEEECCCCCHH-HHHHHHHHHHHCCCCCCEEECCCEEECCCCC-------C------CCCCCCCHHHHHHHHH
Q ss_conf 798557707866898999-9999999997408888602054112048741-------2------4456879899999999
Q gi|254780485|r 195 SGIKVCCGGILGLGEMID-DRIDMLLTLANLSTPPESIPINLLIPIPGSK-------F------EENKKVDPIEHVRIIS 260 (328)
Q Consensus 195 ~G~~~~sg~l~G~gEt~e-eri~~l~~lr~l~~~~~~v~~~~~~p~~gt~-------l------~~~~~~~~~e~lr~iA 260 (328)
T Consensus 163 ~g~dvG~EiPa--ipg~e~~i~e~~~~~~~~~~--~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~ 238 (353)
T COG2108 163 YGMDVGVEIPA--IPGEEEAILEFAKALDENGL--DFLNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLK 238 (353)
T ss_pred HCCCCEEECCC--CCCHHHHHHHHHHHHHHCCC--CEEEEEEEEECCCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHH
T ss_conf 28551043278--86568899999999876066--534210044052119999866761326875543445899999999
Q ss_pred HHHHHCCCCCCEEEEHHHH
Q ss_conf 9999686872142311565
Q gi|254780485|r 261 VARILMPKSRLRLAAGRAM 279 (328)
Q Consensus 261 i~RL~lP~~~i~i~~~~~~ 279 (328)
T Consensus 239 ~~~~~-~~l~vH~Css~~K 256 (353)
T COG2108 239 WAEEN-WDLTVHYCSSKFK 256 (353)
T ss_pred HHHCC-CCCEEEECCHHHH
T ss_conf 87515-6754897735666