HHsearch alignment for GI: 254780485 and conserved domain: COG4277
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only].
Probab=98.95 E-value=8.7e-08 Score=71.85 Aligned_cols=190 Identities=14% Similarity=0.174 Sum_probs=119.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHCCC---CC
Q ss_conf 7868342321243354777564100068579999999999649-8389973036888744289999988762136---88
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGVKSL---GL 137 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~---~~ 137 (328)
T Consensus 61 TN~CiyDC~YCINr~s~~--~pra-~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyTmE~mi~var~LRle~~f~G 137 (404)
T COG4277 61 TNFCIYDCAYCINRSSND--TPRA-RFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYTMEEMIEVARILRLEHKFRG 137 (404)
T ss_pred HHHHHHHHHHHHCCCCCC--CCCC-CCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 625777638875555578--8543-0589999999998988742433000246336861479999999998832045575
Q ss_pred CEEEECCCCCHHHHHHHHCCC--CCEEEEECCCC-HHHHHCCCCCCCHHHHHHHHHHHHH---------C------CC-C
Q ss_conf 324102569999999874157--60697513437-7773205888898999999999998---------7------98-5
Q gi|254780485|r 138 ETCMTLGMLSFEQAQILSKAG--LDYYNHNIDTS-ERFYPHVTTTHTFEDRLQTLENVRK---------S------GI-K 198 (328)
Q Consensus 138 ~i~~~~g~~~~~~~~~Lk~aG--~~~~~~~let~-~~~~~~~~~~~~~~~~l~~~~~a~~---------~------G~-~ 198 (328)
T Consensus 138 YIHlK~IP--gas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fap 215 (404)
T COG4277 138 YIHLKIIP--GASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAP 215 (404)
T ss_pred EEEEEECC--CCCHHHHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC
T ss_conf 79987569--9998999998653410577674488644666188888378888989999877651550222104723367
Q ss_pred --CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf --577078668-98999999999999740888860205411204874124456879899999
Q gi|254780485|r 199 --VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVR 257 (328)
Q Consensus 199 --~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr 257 (328)
T Consensus 216 aGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~-lkRVyySaf~Pv~~s~~lp~~~pplmRehR 276 (404)
T COG4277 216 AGQSTQMIVGADGETDEDILSRSENLYGRYS-LKRVYYSAFSPVPSSPLLPDDKPPLMREHR 276 (404)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 7873278871588744889988887753243-148986213336889888666785367777