HHsearch alignment for GI: 254780485 and conserved domain: PRK06245

>PRK06245 cofG FO synthase subunit 1; Reviewed.
Probab=100.00  E-value=0  Score=366.60  Aligned_cols=272  Identities=22%  Similarity=0.300  Sum_probs=221.3

Q ss_pred             HCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH
Q ss_conf             6289856999864530-786834232124335477756410006857999999999964983899730368887442899
Q gi|254780485|r   46 NFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI  124 (328)
Q Consensus        46 ~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~  124 (328)
T Consensus         2 ~~~G~~VTy~~n~~In~TNiC~~~C~fCaF~~~~~---~-a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~--~~~~   75 (336)
T PRK06245          2 VNMSKIVTYSRNVFIPLTYECRNRCGYCTFRPDPG---E-ASLLSPEEVREILERGQDAGCTEALFTFGEVPDE--SEEI   75 (336)
T ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---C-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--CHHH
T ss_conf             98898789818626167754026882586746887---5-6877999999999999976983999805788663--6899


Q ss_pred             HH---------------HHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCC---CCCCCHHHH
Q ss_conf             99---------------988762136883241025699999998741576069751343-77773205---888898999
Q gi|254780485|r  125 IV---------------DMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHV---TTTHTFEDR  185 (328)
Q Consensus       125 ~~---------------e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~---~~~~~~~~~  185 (328)
T Consensus        76 ~~~l~~~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~a-smG~mlE~~se~l~~~~h~~~P~K~~~~r  154 (336)
T PRK06245         76 REQLAEPGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNA-SMGLMLEQTSPRLLETVHRHSPGKDPELR  154 (336)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             99999707550778899985888763655223667678999998753597-66757123568988763044898788999


Q ss_pred             HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999987985577078668989999999999997408888602---0541120487412445687989999999999
Q gi|254780485|r  186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIPGSKFEENKKVDPIEHVRIISVA  262 (328)
Q Consensus       186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~  262 (328)
T Consensus       155 L~~ie~Ah~lgIptTatmL~G~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~~~~~~~e~l~~iAvA  234 (336)
T PRK06245        155 LETIEWAGELKIPFTTGLLIGIGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENHPEPSPEEMPRVVALA  234 (336)
T ss_pred             HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999839972202452066999999999999999886349757995068778987533469997999999999999


Q ss_pred             HHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEE--ECCEEE-CCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             99686872142311565165689999980998---899--778665-15888989999999982985324
Q gi|254780485|r  263 RILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIF--VGDTLL-TAKNPSYNKDTILFNRLGLIPDL  326 (328)
Q Consensus       263 RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~--~g~~~~-t~~g~~~~~~~~~i~~~G~~P~~  326 (328)
T Consensus       235 RiiL~~~-i~IQap-pnL~~~~~~~~L~~GanDlGGisp~t~d~vnpe~~wp~~~~l~~~~~~~g~~l~~  302 (336)
T PRK06245        235 RLILPPD-ISIQVP-PNLVDDTGLLFLEAGADDLGGISPVTKDEVNPEYPWPDIDELKEILEEAGWQLKE  302 (336)
T ss_pred             HHHCCCC-CEEEEC-CCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             9966998-579769-8678557899986787667887757666018899998999999999975996564