HHsearch alignment for GI: 254780485 and conserved domain: PRK06245
>PRK06245 cofG FO synthase subunit 1; Reviewed.
Probab=100.00 E-value=0 Score=366.60 Aligned_cols=272 Identities=22% Similarity=0.300 Sum_probs=221.3
Q ss_pred HCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 6289856999864530-786834232124335477756410006857999999999964983899730368887442899
Q gi|254780485|r 46 NFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328)
Q Consensus 46 ~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328)
T Consensus 2 ~~~G~~VTy~~n~~In~TNiC~~~C~fCaF~~~~~---~-a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~--~~~~ 75 (336)
T PRK06245 2 VNMSKIVTYSRNVFIPLTYECRNRCGYCTFRPDPG---E-ASLLSPEEVREILERGQDAGCTEALFTFGEVPDE--SEEI 75 (336)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---C-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--CHHH
T ss_conf 98898789818626167754026882586746887---5-6877999999999999976983999805788663--6899
Q ss_pred HH---------------HHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCC---CCCCCHHHH
Q ss_conf 99---------------988762136883241025699999998741576069751343-77773205---888898999
Q gi|254780485|r 125 IV---------------DMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHV---TTTHTFEDR 185 (328)
Q Consensus 125 ~~---------------e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~---~~~~~~~~~ 185 (328)
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~a-smG~mlE~~se~l~~~~h~~~P~K~~~~r 154 (336)
T PRK06245 76 REQLAEPGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNA-SMGLMLEQTSPRLLETVHRHSPGKDPELR 154 (336)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999707550778899985888763655223667678999998753597-66757123568988763044898788999
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999987985577078668989999999999997408888602---0541120487412445687989999999999
Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIPGSKFEENKKVDPIEHVRIISVA 262 (328)
Q Consensus 186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~ 262 (328)
T Consensus 155 L~~ie~Ah~lgIptTatmL~G~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~~~~~~~e~l~~iAvA 234 (336)
T PRK06245 155 LETIEWAGELKIPFTTGLLIGIGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENHPEPSPEEMPRVVALA 234 (336)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999839972202452066999999999999999886349757995068778987533469997999999999999
Q ss_pred HHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEE--ECCEEE-CCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99686872142311565165689999980998---899--778665-15888989999999982985324
Q gi|254780485|r 263 RILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIF--VGDTLL-TAKNPSYNKDTILFNRLGLIPDL 326 (328)
Q Consensus 263 RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~--~g~~~~-t~~g~~~~~~~~~i~~~G~~P~~ 326 (328)
T Consensus 235 RiiL~~~-i~IQap-pnL~~~~~~~~L~~GanDlGGisp~t~d~vnpe~~wp~~~~l~~~~~~~g~~l~~ 302 (336)
T PRK06245 235 RLILPPD-ISIQVP-PNLVDDTGLLFLEAGADDLGGISPVTKDEVNPEYPWPDIDELKEILEEAGWQLKE 302 (336)
T ss_pred HHHCCCC-CEEEEC-CCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9966998-579769-8678557899986787667887757666018899998999999999975996564