HHsearch alignment for GI: 254780485 and conserved domain: PRK07360
>PRK07360 FO synthase subunit 2; Reviewed.
Probab=100.00 E-value=0 Score=473.26 Aligned_cols=323 Identities=16% Similarity=0.253 Sum_probs=268.7
Q ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCC
Q ss_conf 98557321342002344789999999973991----89999999998886289856999864530-78683423212433
Q gi|254780485|r 1 MSRSTVVPEENPTKKPKVWTSKEVFQIYNMPF----NDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQS 75 (328)
Q Consensus 1 ~~~~~~~~~~~~~~~~e~ls~eea~~L~~~~~----~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~ 75 (328)
T Consensus 2 ~~~~~~~~Il~Kv~~GerLs~eeal~L~~~~d~~~l~~L~~~A~~v-R~~~~Gd~Vtfv~n~~In~TNiC~~~C~fCaF~ 80 (375)
T PRK07360 2 MTDQIPEDILERAFKGKDLSKEDALELLEDTEPRNIFEILELADRL-RAEQVGDTVTYVVNRNINFTNICEGHCGFCAFR 80 (375)
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHCCCEEEEEEEECCCHHHHHHCCCCCCCCC
T ss_conf 8751299999999769999999999998469857899999999999-998669969998252665617987089827340
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CCHHHHHHHHHHHCCCCCCEEEEC---------
Q ss_conf 54777564100068579999999999649838997303688874---428999998876213688324102---------
Q gi|254780485|r 76 VHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE---RDLSIIVDMIKGVKSLGLETCMTL--------- 143 (328)
Q Consensus 76 ~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~---~~~~~~~e~i~~i~~~~~~i~~~~--------- 143 (328)
T Consensus 81 r~p~~--~~ay~ls~eEi~~~~~~a~~~G~tEv~~~gG~~P~l~~~~~~~~~y~~~~~~ik~~~p~i~i~a~s~~Ei~~~ 158 (375)
T PRK07360 81 RDKGD--PGAFWLDIEEILEKAAEAVKAGATEVCIQGGLHPAADLNGSSLDFYLEILKAIKAEFPGIHLHAFSPQEVQFA 158 (375)
T ss_pred CCCCC--CCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 78899--7660278999999999998658808997688783445464518999999999998689855640899999998
Q ss_pred ----CCCCHHHHHHHHCCCCCEE-EEECCC-CHHHHHCCCCCC-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH
Q ss_conf ----5699999998741576069-751343-777732058888-989999999999987985577078668989999999
Q gi|254780485|r 144 ----GMLSFEQAQILSKAGLDYY-NHNIDT-SERFYPHVTTTH-TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRID 216 (328)
Q Consensus 144 ----g~~~~~~~~~Lk~aG~~~~-~~~let-~~~~~~~~~~~~-~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~ 216 (328)
T Consensus 159 a~~~g~~~~e~l~~LkeAGl~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~~~Ah~lGi~ttatmL~Gh~Et~eerv~ 238 (375)
T PRK07360 159 AREDGLSYEEVLKALKDAGLDSMPGTAAEILDDEVRRIICPEKITTAEWIEIVKTAHKLGLPTTSTMMYGHIETPEHRID 238 (375)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
T ss_conf 86649988999999997698758887621034556646598988999999999999982997010026189899999999
Q ss_pred HHHHHHHCCCCCCEEE-C--CCEEECCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHH
Q ss_conf 9999974088886020-5--41120487412445----687989999999999996868721423115651656899999
Q gi|254780485|r 217 MLLTLANLSTPPESIP-I--NLLIPIPGSKFEEN----KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCF 289 (328)
Q Consensus 217 ~l~~lr~l~~~~~~v~-~--~~~~p~~gt~l~~~----~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L 289 (328)
T Consensus 239 hL~~iR~lqd~tggf~efIp~~F~~-~nt~l~~~~~~~~~~~~~e~lk~~AvaRl~Ldn~i~~Iqa~Wv~~g~~~~q~aL 317 (375)
T PRK07360 239 HLSILREIQKETGGITEFIPLPFVH-ENAPLYERGRVKRGAPGLEDLKLYAVSRIFLGNWIKNIQPSWVKLGLKLAQEAL 317 (375)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH
T ss_conf 9999998887449846997114358-998500015678888669899999999998338887657777544899999999
Q ss_pred HHCCC---EEEECCEEECCCC------CCHHHHHHHHHHCCCCCCCC
Q ss_conf 80998---8997786651588------89899999999829853247
Q gi|254780485|r 290 FSGAN---SIFVGDTLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 290 ~~GaN---~~~~g~~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328)
T Consensus 318 ~~GanD~ggt~~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p~eR 364 (375)
T PRK07360 318 NCGANDLGGTLMEEHITKMAGASGGTCMSVEELENAIKSIGRIPKQR 364 (375)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHC
T ss_conf 66997676656667500122689988899999999999849983111