HHsearch alignment for GI: 254780485 and conserved domain: PRK11858
>PRK11858 aksA trans-homoaconitate synthase; Reviewed.
Probab=96.19 E-value=0.12 Score=30.81 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=120.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHCCCCCEEE
Q ss_conf 0068579999999999649838997303688874428999998876213688--32410256999999987415760697
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL--ETCMTLGMLSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~--~i~~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328)
T Consensus 21 ~~fs~~~K~~ia~~L~~~GV~~IEvG--~P~~~~~e~----~~~~~i~~~~l~~~i~~-~~R~~~~di~~a~~~g~~~v~ 93 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG--FPAVSEDEK----EAIKAIAKLGLNASILA-WNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCHH----HHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCCCEEE
T ss_conf 99999999999999998198999994--777783489----99999985679845887-403578779999857969899
Q ss_pred EECCCCHHHHHCCCCCCCHHH----HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC
Q ss_conf 513437777320588889899----9999999998798557707866898999999999999740888860205411204
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFED----RLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~----~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328)
T Consensus 94 i~~~~Sd~h~~~~l-~~t~~e~l~~~~~~v~~Ak~~Gl~v~f~~eD~~r~~~~~l~~~~~~a~~~Ga--d~I------~l 164 (378)
T PRK11858 94 IFIATSDIHLKYKL-KKTREEVLERLVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEAAKAAEEAGA--DRV------RF 164 (378)
T ss_pred EEECCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEE------EE
T ss_conf 99606799999996-8998999999999999999769869994401256899999999999997499--899------96
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHC--HHHHHHHHHHCCC---EEE--ECCEEECCCCCCHHH
Q ss_conf 874124456879899999999999968687214231156516--5689999980998---899--778665158889899
Q gi|254780485|r 240 PGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMS--DELQALCFFSGAN---SIF--VGDTLLTAKNPSYNK 312 (328)
Q Consensus 240 ~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~--~~~~~~~L~~GaN---~~~--~g~~~~t~~g~~~~~ 312 (328)
T Consensus 165 ~DT----~G~~~P~~v~~~v~~l~~~~~-~~i~~H~-HNd~GlAvANalaAv~AGa~~v~~Tv~GiGE---RaGNa~le~ 235 (378)
T PRK11858 165 CDT----VGILDPFTMYELVKELVEAVD-IPIEVHC-HNDFGMATANAIAGIEAGATQVHTTVNGLGE---RAGNAALEE 235 (378)
T ss_pred CCC----CCCCCHHHHHHHHHHHHHHCC-CCEEEEE-ECCCCHHHHHHHHHHHHCCCEEEEEEEEEEC---CCCCCCHHH
T ss_conf 365----566699999999999997269-8559997-0775559999999998099989987544654---656614999
Q ss_pred HHHHHH-HCCCCCC
Q ss_conf 999999-8298532
Q gi|254780485|r 313 DTILFN-RLGLIPD 325 (328)
Q Consensus 313 ~~~~i~-~~G~~P~ 325 (328)
T Consensus 236 v~~~L~~~~~~~~~ 249 (378)
T PRK11858 236 VVMALKYLYGIDLG 249 (378)
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99999974497766