HHsearch alignment for GI: 254780485 and conserved domain: TIGR00089
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=99.48 E-value=1.5e-11 Score=97.12 Aligned_cols=189 Identities=16% Similarity=0.306 Sum_probs=136.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC----C-CCCCC--CC-HHHH
Q ss_conf 998645307868342321243354777564100068579999999999649838997303----6-88874--42-8999
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAA----W-REPKE--RD-LSII 125 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~----~-~~~~~--~~-~~~~ 125 (328)
T Consensus 153 ~~a~~~I-~~GC~~~CtyCivP~-~RG--~-~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~~~~~La~L 227 (455)
T TIGR00089 153 TRAFVKI-QEGCDKFCTYCIVPY-TRG--R-ERSRPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEGKTNSLADL 227 (455)
T ss_pred EEEEEEE-CCCCCCCCCEEEECC-CCC--E-ECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 3899984-026586977688134-266--0-0135889999999999846980999998852562477888897647999
Q ss_pred HHHHHH-HCCC-CCC-EEEECCCCCHHHHHHHHCC--C--CCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--
Q ss_conf 998876-2136-883-2410256999999987415--7--6069751343-777732058888989999999999987--
Q gi|254780485|r 126 VDMIKG-VKSL-GLE-TCMTLGMLSFEQAQILSKA--G--LDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS-- 195 (328)
Q Consensus 126 ~e~i~~-i~~~-~~~-i~~~~g~~~~~~~~~Lk~a--G--~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~-- 195 (328)
T Consensus 228 L~~l~~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r~~~P 307 (455)
T TIGR00089 228 LRELSKKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLRAKVP 307 (455)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99984005970268860467032687899999850788535202212661886999703789888999999999998478
Q ss_pred CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf 985577078668-989999999999997408888602054112048741244568
Q gi|254780485|r 196 GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328)
Q Consensus 196 G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328)
T Consensus 308 ~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F--~~~~~F~YSpR~gTpAa~~~d 360 (455)
T TIGR00089 308 DAAITTDIIVGFPGETEEDFEETLDLVEEVKF--DKLHSFIYSPRPGTPAADMKD 360 (455)
T ss_pred CCEEECCEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCC
T ss_conf 81775026882899988999999999852384--434312057888874635678