HHsearch alignment for GI: 254780485 and conserved domain: TIGR00433

>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=100.00  E-value=0  Score=499.67  Aligned_cols=296  Identities=50%  Similarity=0.913  Sum_probs=275.0

Q ss_pred             HHCCC---HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCHH--
Q ss_conf             97399---189999999998886289856999864530786834232124335477----------756410006857--
Q gi|254780485|r   27 IYNMP---FNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNK----------SKLKASKLINVD--   91 (328)
Q Consensus        27 L~~~~---~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~----------~~~~~~~~~~~E--   91 (328)
T Consensus         1 l~~~p~E~~l~Ll~~A~~~~r~~~~~~~v~Lc~i~N~KSG~C~EDC~YCsQSs~~~CniPiYPlk~~~~~~~~~~~~~De   80 (350)
T TIGR00433         1 LYETPDEDLLDLLYEAFQIHRKHFNPRKVQLCTIMNIKSGGCPEDCGYCSQSSRSKCNIPIYPLKDTGLPIERLKKVDDE   80 (350)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             98887513799999999999873374802342110122185766776788555266886224566741789988767654


Q ss_pred             ------------HHHHHHHHHHHCCC---------EEEEEECCCCCCCCCC------HHHHHHHHHHHCC--CCCCEEEE
Q ss_conf             ------------99999999996498---------3899730368887442------8999998876213--68832410
Q gi|254780485|r   92 ------------QVLKEAKNAKENGA---------TRYCMGAAWREPKERD------LSIIVDMIKGVKS--LGLETCMT  142 (328)
Q Consensus        92 ------------ei~~~a~~~~~~G~---------~~~~l~~~~~~~~~~~------~~~~~e~i~~i~~--~~~~i~~~  142 (328)
T Consensus        81 Cskisssier~k~~l~eA~~a~~~G~PnrGfPlWv~rFClvasGR~~~~~~~~dref~~~v~~~~~~~~~ee~GL~~C~~  160 (350)
T TIGR00433        81 CSKISSSIEREKEILEEARAAKAAGAPNRGFPLWVTRFCLVASGRGPKDRESKDREFIEIVEAVVKIVEEEELGLKTCAT  160 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHC
T ss_conf             32222111111378999999997087888853035014655417888877742202889999999997520037122320


Q ss_pred             CCCCCHHHHHHHHCCCCCEEEEECC-CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf             2569999999874157606975134-377773205888898999999999998798557707866898999999999999
Q gi|254780485|r  143 LGMLSFEQAQILSKAGLDYYNHNID-TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTL  221 (328)
Q Consensus       143 ~g~~~~~~~~~Lk~aG~~~~~~~le-t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~l  221 (328)
T Consensus       161 LG~l~~eqa~~LKdAGld~YNHNl~~TS~~~y~~I~sThty~DR~~T~~~~k~aGl~~CsGGI~GlgEt~~DrI~l~~~L  240 (350)
T TIGR00433       161 LGLLDPEQAKQLKDAGLDRYNHNLDETSQEYYSKIISTHTYDDRVDTVKNAKEAGLKVCSGGILGLGETWEDRIGLALAL  240 (350)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
T ss_conf             37768899998886388611167367878766873432307767999999997388724462345898889999999997


Q ss_pred             HHCCCCCCEEECCCEEECCCCC----CCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHH---HHHHHC
Q ss_conf             7408888602054112048741----244--5687989999999999996868721423115651656899---999809
Q gi|254780485|r  222 ANLSTPPESIPINLLIPIPGSK----FEE--NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQA---LCFFSG  292 (328)
Q Consensus       222 r~l~~~~~~v~~~~~~p~~gt~----l~~--~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~---~~L~~G  292 (328)
T Consensus       241 ~~L~p~peSvPiN~L~~~~GTP~~E~L~~~~~~~L~~~~~Lk~iA~ari~mP~~~iRlagGR~~~m~e~~~kea~~~~ag  320 (350)
T TIGR00433       241 ANLSPEPESVPINFLVKIEGTPAYEKLADGEVKKLSADDALKTIALARIIMPKAEIRLAGGREVNMKELQQKEAMCFMAG  320 (350)
T ss_pred             HCCCCCCCEECCCCEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCHHHHHHHHHH
T ss_conf             52776787011132026888853443158886733889999999998865431100100251450476754899999984


Q ss_pred             CCEEEECCEEECCCCCCHHHHHHHHHHCCC
Q ss_conf             988997786651588898999999998298
Q gi|254780485|r  293 ANSIFVGDTLLTAKNPSYNKDTILFNRLGL  322 (328)
Q Consensus       293 aN~~~~g~~~~t~~g~~~~~~~~~i~~~G~  322 (328)
T Consensus       321 ~Nsif~G~yLtT~g~~~eD~D~~~l~~lgL  350 (350)
T TIGR00433       321 ANSIFVGDYLTTTGQPPEDEDKKLLAKLGL  350 (350)
T ss_pred             HHHHEECCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf             212304640024865886178999986179