HHsearch alignment for GI: 254780485 and conserved domain: TIGR00539
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=99.20 E-value=2.4e-10 Score=88.95 Aligned_cols=236 Identities=19% Similarity=0.265 Sum_probs=153.0
Q ss_pred EEECCCCCCCCCCCCCCCCCC-CCCCC--CCC-CCCHHHHHHHHHHH----HHCCCEEEEEECCCCCC-CCCCHHHHHHH
Q ss_conf 453078683423212433547-77564--100-06857999999999----96498389973036888-74428999998
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN-KSKLK--ASK-LINVDQVLKEAKNA----KENGATRYCMGAAWREP-KERDLSIIVDM 128 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~-~~~~~--~~~-~~~~Eei~~~a~~~----~~~G~~~~~l~~~~~~~-~~~~~~~~~e~ 128 (328)
T Consensus 5 IHIP--fCe~kC~YCdFNsy~~ksd~p~~eY~~aL~~d-l~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~~ 81 (371)
T TIGR00539 5 IHIP--FCEQKCGYCDFNSYAQKSDIPKEEYLQALLQD-LKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLEE 81 (371)
T ss_pred EECC--HHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 5560--22375888653324554278567999999999-99999860443236765568856887414689999999999
Q ss_pred HHHHCC---CCCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 876213---68832--41025699999998741576069751343-777732058888989999999999987985-577
Q gi|254780485|r 129 IKGVKS---LGLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCC 201 (328)
Q Consensus 129 i~~i~~---~~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~s 201 (328)
T Consensus 82 I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enisl 161 (371)
T TIGR00539 82 IKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLENISL 161 (371)
T ss_pred HHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 87521743102111110782125698863676557023321334541557888642113334667999998717520005
Q ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC------CCHHHHHHHHHHHHHHCCCCCCE--
Q ss_conf 078668-989999999999997408888602054112048741244568------79899999999999968687214--
Q gi|254780485|r 202 GGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK------VDPIEHVRIISVARILMPKSRLR-- 272 (328)
Q Consensus 202 g~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~------~~~~e~lr~iAi~RL~lP~~~i~-- 272 (328)
T Consensus 162 DL~~glP~qtl~~l~~~l~~A~eL~~--~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~a~~~e~v~~~le~~g~~QY 239 (371)
T TIGR00539 162 DLMYGLPLQTLEELKEELKLALELDA--EHLSVYALIVEPNTVFEKRAKKGRLHLPDDDALAEIYEVVRELLEAFGYKQY 239 (371)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 54407861348999999865531784--5112332342233045426888878946703456799999999985582222
Q ss_pred -EE-------------EHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf -23-------------1156516568999998099889977866
Q gi|254780485|r 273 -LA-------------AGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 273 -i~-------------~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
T Consensus 240 E~SnyAkaG~q~KHNL~YW----~~~dYlg~GaGA~G~~~~~r~ 279 (371)
T TIGR00539 240 EVSNYAKAGYQVKHNLAYW----SAEDYLGIGAGAHGKVANERT 279 (371)
T ss_pred HHHHHHHCCCCCCCCCCCC----CCCCCEEECCCEEEECCCCEE
T ss_conf 1238863787620022336----766613533740100147402