HHsearch alignment for GI: 254780485 and conserved domain: TIGR01579

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=99.12  E-value=8e-09  Score=78.78  Aligned_cols=181  Identities=15%  Similarity=0.249  Sum_probs=131.5

Q ss_pred             CCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC---CC-CC---CCCHHHHHHHHHH-
Q ss_conf             7868342321243--3547775641000685799999999996498389973036---88-87---4428999998876-
Q gi|254780485|r   62 TGGCPENCGYCNQ--SVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW---RE-PK---ERDLSIIVDMIKG-  131 (328)
Q Consensus        62 TN~C~~~C~fCaf--~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~---~~-~~---~~~~~~~~e~i~~-  131 (328)
T Consensus       217 QdGCn~~CsyC~IP~~RGt-----~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~~g~~L~~Ll~~i~~q  291 (492)
T TIGR01579       217 QDGCNKFCSYCIIPFARGT-----RSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGENGSSLAKLLEQILKQ  291 (492)
T ss_pred             ECCCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             7588988441014033789-----76416678999999999737755999840014445688876676089999999864


Q ss_pred             HCCC-CCCE-EEECCCCCHHHHHHHHC-C-CCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCEEE
Q ss_conf             2136-8832-41025699999998741-5-76069751343-777732058888989999999999987--985577078
Q gi|254780485|r  132 VKSL-GLET-CMTLGMLSFEQAQILSK-A-GLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGI  204 (328)
Q Consensus       132 i~~~-~~~i-~~~~g~~~~~~~~~Lk~-a-G~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~~sg~l  204 (328)
T Consensus       292 ~~g~~RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~I  371 (492)
T TIGR01579       292 IPGIERIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVI  371 (492)
T ss_pred             CCCCEEEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf             68834676325776550489999973476416320000222773798424878876899999999985077630376037


Q ss_pred             ECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf             668-989999999999997408888602054112048741244568
Q gi|254780485|r  205 LGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK  249 (328)
Q Consensus       205 ~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~  249 (328)
T Consensus       372 VGFP~E~eedFq~t~~~~~~~~~~--~~HiFpyS~R~~T~A~~m~~  415 (492)
T TIGR01579       372 VGFPGESEEDFQETLRIVKEIEFS--GLHIFPYSARPGTPASAMDD  415 (492)
T ss_pred             EECCCCCHHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCCCCCCC
T ss_conf             408889889999999998526602--13354268843281204787