HHsearch alignment for GI: 254780485 and conserved domain: TIGR01579
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=99.12 E-value=8e-09 Score=78.78 Aligned_cols=181 Identities=15% Similarity=0.249 Sum_probs=131.5
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC---CC-CC---CCCHHHHHHHHHH-
Q ss_conf 7868342321243--3547775641000685799999999996498389973036---88-87---4428999998876-
Q gi|254780485|r 62 TGGCPENCGYCNQ--SVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW---RE-PK---ERDLSIIVDMIKG- 131 (328)
Q Consensus 62 TN~C~~~C~fCaf--~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~---~~-~~---~~~~~~~~e~i~~- 131 (328)
T Consensus 217 QdGCn~~CsyC~IP~~RGt-----~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~~g~~L~~Ll~~i~~q 291 (492)
T TIGR01579 217 QDGCNKFCSYCIIPFARGT-----RSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGENGSSLAKLLEQILKQ 291 (492)
T ss_pred ECCCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7588988441014033789-----76416678999999999737755999840014445688876676089999999864
Q ss_pred HCCC-CCCE-EEECCCCCHHHHHHHHC-C-CCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCEEE
Q ss_conf 2136-8832-41025699999998741-5-76069751343-777732058888989999999999987--985577078
Q gi|254780485|r 132 VKSL-GLET-CMTLGMLSFEQAQILSK-A-GLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGI 204 (328)
Q Consensus 132 i~~~-~~~i-~~~~g~~~~~~~~~Lk~-a-G~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~~sg~l 204 (328)
T Consensus 292 ~~g~~RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~I 371 (492)
T TIGR01579 292 IPGIERIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVI 371 (492)
T ss_pred CCCCEEEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 68834676325776550489999973476416320000222773798424878876899999999985077630376037
Q ss_pred ECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf 668-989999999999997408888602054112048741244568
Q gi|254780485|r 205 LGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328)
Q Consensus 205 ~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328)
T Consensus 372 VGFP~E~eedFq~t~~~~~~~~~~--~~HiFpyS~R~~T~A~~m~~ 415 (492)
T TIGR01579 372 VGFPGESEEDFQETLRIVKEIEFS--GLHIFPYSARPGTPASAMDD 415 (492)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCCCCCCC
T ss_conf 408889889999999998526602--13354268843281204787