HHsearch alignment for GI: 254780485 and conserved domain: TIGR02660

>TIGR02660 nifV_homocitr homocitrate synthase; InterPro: IPR013477 Most NifV-type homocitrate synthases are encoded within operons for nitrogen fixation. They are homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by these enzymes becomes a part of the iron-molybdenum cofactor of nitrogenase.; GO: 0004410 homocitrate synthase activity, 0051188 cofactor biosynthetic process.
Probab=93.76  E-value=0.57  Score=26.16  Aligned_cols=208  Identities=16%  Similarity=0.240  Sum_probs=122.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEE
Q ss_conf             10006857999999999964983899730368887442899999887621368832410256-99999998741576069
Q gi|254780485|r   84 ASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYY  162 (328)
Q Consensus        84 ~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~  162 (328)
T Consensus        16 pGVAF~~~EK~aIA~aLd~aGV~ElEvG--iPAMG~~E----~~~iraI~~~~l~a~l~~WcR~~~~Di~aa~~~G~~~V   89 (369)
T TIGR02660        16 PGVAFTAAEKLAIARALDEAGVDELEVG--IPAMGEEE----RAVIRAIVALGLKARLMAWCRARDADIEAAARCGVDAV   89 (369)
T ss_pred             CHHCCCHHHHHHHHHHHHHHCCCEEEEC--CCCCCHHH----HHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHEE
T ss_conf             2003487899999999998096247615--77687889----99999999628993031100104799999987205203


Q ss_pred             EEECCCCHH-HHHCCCCC-CCH-HHHH-HHHHHHHHCCCCCCCEEEECCCC-CHHH---HHHHHHHHHHCCCCCCEEECC
Q ss_conf             751343777-73205888-898-9999-99999998798557707866898-9999---999999997408888602054
Q gi|254780485|r  163 NHNIDTSER-FYPHVTTT-HTF-EDRL-QTLENVRKSGIKVCCGGILGLGE-MIDD---RIDMLLTLANLSTPPESIPIN  234 (328)
Q Consensus       163 ~~~let~~~-~~~~~~~~-~~~-~~~l-~~~~~a~~~G~~~~sg~l~G~gE-t~ee---ri~~l~~lr~l~~~~~~v~~~  234 (328)
T Consensus        90 ~iS~PvSd~~~~~KL~~~Cr~w~~~~~~~~V~~A~~~Gl~Vs----VG~EDASRAd~~FL~~~~~~A~~aGA-------~  158 (369)
T TIGR02660        90 DISIPVSDLQIEAKLRKDCRAWVLERLARLVSFARDRGLEVS----VGGEDASRADPEFLVELAEVAQEAGA-------D  158 (369)
T ss_pred             ECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE----ECCCCCCCCCHHHHHHHHHHHHHCCC-------C
T ss_conf             100277799999974885789999999999999876442031----05625545888899999999987063-------1


Q ss_pred             CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHH-CHHHHH------HHHHHCCC---EEE--ECCEE
Q ss_conf             1120487412445687989999999999996868721423115651-656899------99980998---899--77866
Q gi|254780485|r  235 LLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMM-SDELQA------LCFFSGAN---SIF--VGDTL  302 (328)
Q Consensus       235 ~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~-~~~~~~------~~L~~GaN---~~~--~g~~~  302 (328)
T Consensus       159 RfRf-ADT----vG~LDPF~~~~~~~~Lr~~~~l-------~lE~HaHnDlGmATANtLAAv~AGA~~vntTV~GLGE--  224 (369)
T TIGR02660       159 RFRF-ADT----VGILDPFSTYELVRALRQAVDL-------PLEFHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE--  224 (369)
T ss_pred             CCCH-HHH----CCCCCHHHHHHHHHHHHHCCCC-------CEEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCHHH--
T ss_conf             1014-312----0225727899999998721799-------6258504763479999999886085776335433011--


Q ss_pred             ECCCCCCHHHHHHHHHH-CCCC
Q ss_conf             51588898999999998-2985
Q gi|254780485|r  303 LTAKNPSYNKDTILFNR-LGLI  323 (328)
Q Consensus       303 ~t~~g~~~~~~~~~i~~-~G~~  323 (328)
T Consensus       225 -RAGNAaLEEV~~AL~~~~G~d  245 (369)
T TIGR02660       225 -RAGNAALEEVAMALKRLLGRD  245 (369)
T ss_pred             -HHCCCHHHHHHHHHHHHCCCC
T ss_conf             -001222489999999857988