HHsearch alignment for GI: 254780485 and conserved domain: cd04739
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.63 E-value=0.6 Score=26.01 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHCC-CCCCEEEECCCCCHHH----HHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 28999998876213-6883241025699999----998741576069751343777732058888989999999999987
Q gi|254780485|r 121 DLSIIVDMIKGVKS-LGLETCMTLGMLSFEQ----AQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS 195 (328)
Q Consensus 121 ~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~----~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~ 195 (328)
T Consensus 83 g~e~~l~~i~~~~~~~~~pvI~Si~g~s~ee~~~~a~~~~~~gad~lElNls~-~~~~~~~~~~~~~~~~~~iv~~Vk~~ 161 (325)
T cd04739 83 GPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYA-LPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 89999999999875359875987168998999999999976499879996566-78885544210688999999999860
Q ss_pred -CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-CCCE----------EECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -9855770786689899999999999974088886020-5411----------204874124456879899999999999
Q gi|254780485|r 196 -GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-INLL----------IPIPGSKFEENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 196 -G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~~~~----------~p~~gt~l~~~~~~~~~e~lr~iAi~R 263 (328)
T Consensus 162 ~~~Pv----~vKLsP~~~di~~ia~aa~~~GA--dgi~liNT~~~~~id~~~~~~~~~~~lSg-~~~~-~~alr~v~~~~ 233 (325)
T cd04739 162 VTIPV----AVKLSPFFSALAHMAKQLDAAGA--DGLVLFNRFYQPDIDLETLEVVPNLLLSS-PAEI-RLPLRWIAILS 233 (325)
T ss_pred CCCCE----EEECCCCCCHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCEEECCCCCCC-CCCC-HHHHHHHHHHH
T ss_conf 78866----99539983009999999997599--88997357665642167641536877457-5300-68899999996
Q ss_pred HHCCCCCCEEE-EHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC-----HHHHHHHHHHCCCC
Q ss_conf 96868721423-11565165689999980998899778665158889-----89999999982985
Q gi|254780485|r 264 ILMPKSRLRLA-AGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS-----YNKDTILFNRLGLI 323 (328)
Q Consensus 264 L~lP~~~i~i~-~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~-----~~~~~~~i~~~G~~ 323 (328)
T Consensus 234 ~~~~---ipIiG~GGI~s~~Da-~e~ilAGAsaVQv~TA~-~~~G~~i~~~i~~eL~~~m~~~G~~ 294 (325)
T cd04739 234 GRVK---ASLAASGGVHDAEDV-VKYLLAGADVVMTTSAL-LRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred CCCC---CCEEEECCCCCHHHH-HHHHHCCCCHHHEEHHH-HHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 4689---898888895989999-99998098876143234-6418379999999999999983999