Query gi|254780485|ref|YP_003064898.1| biotin synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 328
No_of_seqs 191 out of 2102
Neff 8.3
Searched_HMMs 39220
Date Sun May 29 17:18:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780485.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06256 biotin synthase; Vali 100.0 0 0 551.4 33.2 319 4-326 3-325 (325)
2 COG0502 BioB Biotin synthase a 100.0 0 0 512.3 31.6 311 15-327 10-322 (335)
3 PRK08444 hypothetical protein; 100.0 0 0 500.1 29.0 312 8-327 2-343 (353)
4 TIGR00433 bioB biotin synthase 100.0 0 0 499.7 22.3 296 27-322 1-350 (350)
5 PRK08508 biotin synthase; Prov 100.0 0 0 491.6 28.1 274 50-327 2-277 (279)
6 PRK07094 biotin synthase; Prov 100.0 0 0 476.9 31.5 300 19-325 1-322 (323)
7 PRK05927 hypothetical protein; 100.0 0 0 480.4 27.9 310 13-327 1-339 (350)
8 PRK07360 FO synthase subunit 2 100.0 0 0 473.3 27.9 323 1-327 2-364 (375)
9 PRK08445 hypothetical protein; 100.0 0 0 472.4 26.8 306 17-327 2-338 (348)
10 PRK05926 hypothetical protein; 100.0 0 0 469.9 28.2 317 4-327 14-366 (371)
11 PRK09234 fbiC FO synthase; Rev 100.0 0 0 457.9 28.1 315 9-327 481-829 (846)
12 TIGR00423 TIGR00423 conserved 100.0 0 0 461.9 22.0 272 52-327 1-320 (331)
13 TIGR03551 F420_cofH 7,8-dideme 100.0 0 0 453.8 26.7 303 19-327 1-338 (343)
14 COG1060 ThiH Thiamine biosynth 100.0 0 0 419.1 26.4 321 2-327 5-356 (370)
15 KOG2900 consensus 100.0 0 0 416.8 17.4 310 18-327 47-360 (380)
16 TIGR03550 F420_cofG 7,8-dideme 100.0 0 0 383.2 20.4 266 53-327 1-300 (322)
17 PRK06245 cofG FO synthase subu 100.0 0 0 366.6 24.5 272 46-326 2-302 (336)
18 PRK06267 hypothetical protein; 100.0 0 0 358.2 24.2 253 31-296 5-262 (324)
19 PRK09240 thiH thiamine biosynt 100.0 0 0 351.1 27.3 309 9-327 26-362 (371)
20 TIGR02351 thiH thiazole biosyn 100.0 0 0 355.4 20.2 309 10-327 28-373 (378)
21 PRK09613 thiH thiamine biosynt 100.0 0 0 343.5 28.7 317 3-326 30-384 (471)
22 PRK09234 fbiC FO synthase; Rev 100.0 1.4E-38 3.6E-43 278.2 26.1 309 10-323 22-370 (846)
23 PRK05481 lipoyl synthase; Prov 99.8 7.4E-19 1.9E-23 146.0 17.2 186 62-256 59-253 (289)
24 COG0320 LipA Lipoate synthase 99.8 8.6E-19 2.2E-23 145.6 17.5 188 62-258 77-272 (306)
25 cd01335 Radical_SAM Radical SA 99.8 1.5E-18 3.7E-23 144.1 17.6 198 58-260 1-203 (204)
26 smart00729 Elp3 Elongator prot 99.8 1.1E-18 2.8E-23 144.9 16.3 186 57-249 4-202 (216)
27 PRK12928 lipoyl synthase; Prov 99.8 2.2E-18 5.5E-23 142.9 17.5 190 62-260 67-267 (290)
28 pfam06968 BATS Biotin and Thia 99.8 1.1E-19 2.9E-24 151.5 9.6 93 232-324 1-93 (93)
29 TIGR03471 HpnJ hopanoid biosyn 99.8 1.4E-17 3.7E-22 137.4 18.2 178 62-246 203-385 (472)
30 smart00876 BATS Biotin and Thi 99.8 2.7E-18 6.8E-23 142.3 8.4 93 232-324 1-94 (94)
31 COG1856 Uncharacterized homolo 99.8 2.4E-16 6E-21 129.2 18.4 230 57-297 13-250 (275)
32 PRK08207 coproporphyrinogen II 99.7 7.8E-15 2E-19 119.1 22.3 242 17-266 127-401 (497)
33 TIGR02666 moaA molybdenum cofa 99.7 3E-15 7.6E-20 121.9 20.0 210 48-263 5-224 (346)
34 TIGR01212 TIGR01212 radical SA 99.7 3.2E-15 8.2E-20 121.6 19.3 229 40-276 6-265 (307)
35 PRK13361 molybdenum cofactor b 99.7 6.7E-15 1.7E-19 119.5 19.1 204 48-260 9-216 (329)
36 PRK00164 moaA molybdenum cofac 99.7 1.3E-14 3.4E-19 117.5 18.2 209 44-260 9-222 (334)
37 TIGR02668 moaA_archaeal probab 99.6 1.6E-14 4E-19 117.1 15.1 169 48-223 5-184 (324)
38 PRK08208 coproporphyrinogen II 99.6 1.1E-13 2.8E-18 111.4 17.8 210 46-267 40-267 (436)
39 COG2516 Biotin synthase-relate 99.6 2.9E-14 7.5E-19 115.2 14.7 209 52-268 29-254 (339)
40 PRK05904 coproporphyrinogen II 99.6 2.2E-13 5.6E-18 109.4 18.5 191 64-258 15-215 (353)
41 PRK08599 coproporphyrinogen II 99.6 3.6E-13 9.1E-18 107.9 18.9 199 58-266 6-225 (377)
42 PRK05799 coproporphyrinogen II 99.6 8.1E-13 2.1E-17 105.6 19.4 200 58-267 8-225 (374)
43 COG2896 MoaA Molybdenum cofact 99.6 1.2E-12 3.1E-17 104.4 19.4 205 48-261 6-214 (322)
44 PRK07379 coproporphyrinogen II 99.6 1.1E-12 2.7E-17 104.8 19.0 208 55-268 12-242 (399)
45 PRK05628 coproporphyrinogen II 99.6 6E-13 1.5E-17 106.4 17.6 201 58-268 7-235 (376)
46 PRK05660 coproporphyrinogen II 99.6 6.4E-13 1.6E-17 106.3 17.3 205 58-268 11-230 (378)
47 PRK09058 coproporphyrinogen II 99.6 3.1E-13 7.8E-18 108.4 15.6 203 54-268 59-286 (447)
48 pfam04055 Radical_SAM Radical 99.6 1.5E-13 3.8E-18 110.5 14.0 158 59-220 2-164 (165)
49 PRK08807 consensus 99.6 6E-13 1.5E-17 106.4 16.8 195 64-266 17-231 (385)
50 COG1032 Fe-S oxidoreductase [E 99.6 1.2E-12 2.9E-17 104.5 17.9 191 55-253 199-410 (490)
51 PRK06582 coproporphyrinogen II 99.5 1.1E-12 2.9E-17 104.6 17.1 207 49-267 9-236 (390)
52 PRK08949 consensus 99.5 1.3E-12 3.3E-17 104.2 16.7 199 58-266 11-228 (378)
53 PRK09057 coproporphyrinogen II 99.5 9.4E-13 2.4E-17 105.1 15.6 202 58-265 9-228 (381)
54 COG1242 Predicted Fe-S oxidore 99.5 7.6E-12 1.9E-16 99.0 20.2 232 35-275 7-267 (312)
55 PRK06294 coproporphyrinogen II 99.5 1.1E-12 2.7E-17 104.8 15.6 203 58-266 11-228 (374)
56 PRK08446 coproporphyrinogen II 99.5 1.7E-12 4.4E-17 103.4 16.3 179 64-250 9-202 (351)
57 PRK13347 coproporphyrinogen II 99.5 1.1E-11 2.9E-16 97.9 18.4 206 49-266 48-276 (453)
58 TIGR00089 TIGR00089 RNA modifi 99.5 1.5E-11 3.8E-16 97.1 18.2 189 54-249 153-360 (455)
59 PRK08898 coproporphyrinogen II 99.5 5.7E-12 1.4E-16 99.9 16.1 196 58-263 24-238 (393)
60 COG0621 MiaB 2-methylthioadeni 99.5 9.8E-12 2.5E-16 98.3 17.0 188 54-248 144-346 (437)
61 PRK09249 coproporphyrinogen II 99.5 1.4E-11 3.6E-16 97.2 17.6 204 49-264 49-275 (456)
62 PRK05301 pyrroloquinoline quin 99.5 4E-11 1E-15 94.2 19.3 174 54-238 17-194 (375)
63 KOG2672 consensus 99.4 5.3E-12 1.4E-16 100.1 14.3 177 54-237 110-294 (360)
64 COG0635 HemN Coproporphyrinoge 99.4 3.3E-11 8.4E-16 94.8 17.0 201 51-263 34-258 (416)
65 TIGR03470 HpnH hopanoid biosyn 99.4 1.2E-10 3E-15 91.0 18.6 194 31-236 4-200 (318)
66 PRK08629 coproporphyrinogen II 99.4 1.2E-10 3.1E-15 91.0 16.7 207 49-268 41-262 (424)
67 TIGR01574 miaB-methiolase tRNA 99.3 8.1E-10 2.1E-14 85.4 16.9 192 53-253 154-369 (456)
68 TIGR00510 lipA lipoic acid syn 99.2 2.3E-10 6E-15 89.1 12.6 196 62-264 76-282 (310)
69 TIGR02026 BchE magnesium-proto 99.2 5.4E-10 1.4E-14 86.6 13.1 209 56-273 199-443 (506)
70 TIGR00539 hemN_rel putative ox 99.2 2.4E-10 6.2E-15 88.9 10.6 236 58-302 5-279 (371)
71 TIGR01125 TIGR01125 MiaB-like 99.2 3.8E-09 9.6E-14 81.0 16.3 190 57-254 165-381 (475)
72 TIGR01578 MiaB-like-B MiaB-lik 99.2 2.2E-09 5.7E-14 82.5 13.9 205 54-269 144-373 (487)
73 COG2100 Predicted Fe-S oxidore 99.1 2.1E-08 5.4E-13 76.0 18.5 205 58-263 109-325 (414)
74 TIGR01579 MiaB-like-C MiaB-lik 99.1 8E-09 2.1E-13 78.8 15.5 181 62-249 217-415 (492)
75 COG2108 Uncharacterized conser 99.1 2.1E-09 5.4E-14 82.7 11.2 212 44-279 22-256 (353)
76 COG1243 ELP3 Histone acetyltra 99.0 1.3E-07 3.3E-12 70.7 18.0 210 57-268 69-327 (515)
77 COG0535 Predicted Fe-S oxidore 99.0 1.9E-07 5E-12 69.5 18.3 173 54-239 19-198 (347)
78 PRK13758 anaerobic sulfatase-m 99.0 2.5E-07 6.3E-12 68.8 17.8 164 58-226 9-186 (370)
79 COG4277 Predicted DNA-binding 98.9 8.7E-08 2.2E-12 71.9 15.0 190 62-257 61-276 (404)
80 TIGR02109 PQQ_syn_pqqE coenzym 98.9 2E-08 5.1E-13 76.1 9.7 196 58-266 11-216 (363)
81 TIGR00538 hemN oxygen-independ 98.9 1.7E-07 4.4E-12 69.8 13.7 239 51-302 51-337 (462)
82 PRK11145 pflA pyruvate formate 98.8 3.3E-06 8.4E-11 61.3 19.3 194 62-263 27-238 (246)
83 COG1180 PflA Pyruvate-formate 98.8 1.8E-06 4.5E-11 63.1 16.6 194 62-265 42-240 (260)
84 COG0641 AslB Arylsulfatase reg 98.7 1.2E-05 3.1E-10 57.5 19.2 191 57-257 8-214 (378)
85 COG0731 Fe-S oxidoreductases [ 98.7 4.5E-06 1.1E-10 60.4 16.7 169 60-236 28-212 (296)
86 TIGR02493 PFLA pyruvate format 98.7 4.2E-06 1.1E-10 60.6 16.2 193 62-263 22-241 (243)
87 TIGR01290 nifB nitrogenase cof 98.6 3.3E-06 8.3E-11 61.3 14.2 196 54-255 24-248 (461)
88 KOG4355 consensus 98.5 9.8E-06 2.5E-10 58.1 14.5 210 54-270 187-415 (547)
89 PRK11194 hypothetical protein; 98.5 3.3E-05 8.3E-10 54.6 17.1 223 64-316 112-361 (372)
90 COG1031 Uncharacterized Fe-S o 98.5 7.3E-05 1.9E-09 52.3 18.2 201 38-247 168-414 (560)
91 PRK08195 4-hydroxy-2-ketovaler 98.4 0.0002 5.2E-09 49.3 22.3 214 86-326 20-250 (337)
92 PRK13745 anaerobic sulfatase-m 98.4 3.4E-05 8.8E-10 54.4 15.5 162 62-227 21-196 (412)
93 TIGR03217 4OH_2_O_val_ald 4-hy 98.4 0.00024 6E-09 48.8 23.4 213 86-325 19-248 (333)
94 COG1509 KamA Lysine 2,3-aminom 98.4 0.00013 3.4E-09 50.5 18.1 193 57-268 114-318 (369)
95 PRK01254 hypothetical protein; 98.4 2.5E-05 6.3E-10 55.4 13.1 203 62-269 379-647 (742)
96 pfam00682 HMGL-like HMGL-like. 98.3 0.00044 1.1E-08 47.0 21.0 217 87-321 10-237 (237)
97 KOG2876 consensus 98.3 2.3E-06 5.9E-11 62.3 6.2 190 62-259 18-212 (323)
98 PRK00955 hypothetical protein; 98.2 8.3E-05 2.1E-09 51.9 13.6 202 62-268 298-561 (599)
99 TIGR02495 NrdG2 anaerobic ribo 98.2 4.1E-05 1E-09 53.9 11.6 158 57-226 20-208 (220)
100 KOG2492 consensus 98.2 0.00024 6.2E-09 48.8 15.1 224 62-294 227-499 (552)
101 COG0820 Predicted Fe-S-cluster 98.1 0.00041 1E-08 47.3 15.0 171 64-246 110-302 (349)
102 TIGR01211 ELP3 histone acetylt 98.1 0.00019 4.9E-09 49.5 12.4 262 10-274 3-384 (573)
103 COG1533 SplB DNA repair photol 98.0 0.0008 2E-08 45.3 15.1 165 57-226 32-213 (297)
104 COG1313 PflX Uncharacterized F 98.0 0.0011 2.7E-08 44.4 15.1 195 55-265 120-327 (335)
105 COG1244 Predicted Fe-S oxidore 97.9 0.0029 7.4E-08 41.5 17.5 181 61-246 53-255 (358)
106 PRK05692 hydroxymethylglutaryl 97.8 0.0032 8.2E-08 41.3 21.7 219 86-325 21-265 (287)
107 PRK10076 pyruvate formate lyas 97.8 0.0038 9.6E-08 40.8 15.2 185 64-264 2-204 (213)
108 TIGR00048 TIGR00048 radical SA 97.8 0.0018 4.6E-08 42.9 13.4 195 51-260 120-342 (378)
109 COG5014 Predicted Fe-S oxidore 97.5 0.007 1.8E-07 39.0 13.3 165 61-231 47-219 (228)
110 TIGR03278 methan_mark_10 putat 97.4 0.014 3.7E-07 36.9 19.3 135 87-226 53-197 (404)
111 pfam05853 DUF849 Prokaryotic p 97.3 0.019 4.8E-07 36.1 22.0 231 79-325 15-263 (274)
112 PRK13762 tRNA-modifying enzyme 97.2 0.02 5.2E-07 35.9 13.6 183 64-257 67-281 (321)
113 pfam10113 Fibrillarin_2 Fibril 97.0 0.0084 2.1E-07 38.5 9.2 105 180-299 203-307 (505)
114 TIGR03365 Bsubt_queE 7-cyano-7 96.7 0.0078 2E-07 38.7 7.0 88 58-149 25-114 (238)
115 PRK00915 2-isopropylmalate syn 96.5 0.074 1.9E-06 32.1 20.5 19 191-209 216-234 (511)
116 COG1625 Fe-S oxidoreductase, r 96.5 0.079 2E-06 31.9 13.2 204 62-275 34-255 (414)
117 TIGR03279 cyano_FeS_chp putati 96.2 0.11 2.9E-06 30.8 11.6 140 63-225 82-253 (433)
118 PRK11858 aksA trans-homoaconit 96.2 0.12 3E-06 30.8 23.3 215 86-325 21-249 (378)
119 TIGR02494 PFLE_PFLC glycyl-rad 95.8 0.17 4.3E-06 29.7 14.9 197 52-262 81-301 (305)
120 COG0602 NrdG Organic radical a 95.8 0.032 8.2E-07 34.5 6.1 87 57-148 24-112 (212)
121 COG4018 Uncharacterized protei 95.7 0.052 1.3E-06 33.1 6.9 104 181-299 204-307 (505)
122 PRK09389 (R)-citramalate synth 95.7 0.19 4.8E-06 29.4 21.1 20 190-209 204-223 (487)
123 cd00003 PNPsynthase Pyridoxine 95.6 0.13 3.2E-06 30.6 8.6 117 90-214 72-196 (234)
124 PRK05211 consensus 95.5 0.22 5.6E-06 29.0 9.8 215 92-324 22-246 (248)
125 pfam00478 IMPDH IMP dehydrogen 95.4 0.24 6.2E-06 28.6 12.0 71 91-166 222-293 (467)
126 PRK03220 consensus 95.2 0.27 6.8E-06 28.4 11.6 200 92-323 32-255 (257)
127 PRK05265 pyridoxine 5'-phospha 95.2 0.079 2E-06 31.9 6.3 132 90-234 75-214 (240)
128 PRK13597 imidazole glycerol ph 95.1 0.28 7.2E-06 28.2 9.8 202 92-325 32-250 (252)
129 pfam03740 PdxJ Pyridoxal phosp 95.0 0.3 7.8E-06 28.0 9.6 118 89-214 72-199 (239)
130 PRK00507 deoxyribose-phosphate 94.9 0.17 4.4E-06 29.6 7.3 44 89-132 72-115 (221)
131 PRK07028 bifunctional hexulose 94.6 0.39 1E-05 27.3 16.7 214 86-327 113-341 (429)
132 TIGR00676 fadh2 5,10-methylene 94.4 0.34 8.7E-06 27.7 8.0 106 87-204 84-222 (302)
133 COG0119 LeuA Isopropylmalate/h 94.3 0.46 1.2E-05 26.8 21.3 220 86-325 19-254 (409)
134 KOG3111 consensus 94.3 0.46 1.2E-05 26.8 19.5 195 92-320 18-216 (224)
135 TIGR01302 IMP_dehydrog inosine 94.1 0.35 8.8E-06 27.6 7.5 108 87-201 234-347 (476)
136 PRK04281 consensus 94.0 0.52 1.3E-05 26.4 10.1 201 92-324 31-252 (254)
137 PRK02747 consensus 93.8 0.56 1.4E-05 26.2 9.5 203 92-325 31-255 (257)
138 TIGR02660 nifV_homocitr homoci 93.8 0.57 1.5E-05 26.2 8.3 208 84-323 16-245 (369)
139 PRK09140 2-dehydro-3-deoxy-6-p 93.6 0.6 1.5E-05 26.0 15.1 178 87-319 18-198 (206)
140 cd04739 DHOD_like Dihydroorota 93.6 0.6 1.5E-05 26.0 14.1 189 121-323 83-294 (325)
141 COG1964 Predicted Fe-S oxidore 93.2 0.7 1.8E-05 25.6 11.0 137 72-218 78-225 (475)
142 PRK13585 1-(5-phosphoribosyl)- 93.1 0.73 1.9E-05 25.5 10.2 203 91-319 31-240 (240)
143 PRK05581 ribulose-phosphate 3- 93.0 0.74 1.9E-05 25.4 19.1 197 89-319 14-216 (220)
144 KOG2550 consensus 92.9 0.79 2E-05 25.2 7.8 169 91-274 250-434 (503)
145 PRK07807 inositol-5-monophosph 92.7 0.81 2.1E-05 25.1 9.2 98 92-199 227-333 (479)
146 PRK01659 consensus 92.6 0.85 2.2E-05 25.0 12.0 201 92-323 31-250 (252)
147 KOG4039 consensus 92.5 0.16 4.1E-06 29.9 3.7 63 62-124 79-142 (238)
148 PTZ00314 inosine-5'-monophosph 92.3 0.93 2.4E-05 24.8 8.2 28 273-301 345-372 (499)
149 pfam05913 DUF871 Bacterial pro 92.1 0.98 2.5E-05 24.6 9.9 118 89-207 11-178 (357)
150 PRK02621 consensus 91.6 1.1 2.8E-05 24.3 9.1 201 92-323 31-251 (254)
151 cd00429 RPE Ribulose-5-phospha 91.5 1.1 2.9E-05 24.2 18.5 185 89-305 10-200 (211)
152 PRK07565 dihydroorotate dehydr 91.5 1.1 2.9E-05 24.2 15.5 189 121-323 85-296 (333)
153 PRK12595 bifunctional 3-deoxy- 91.4 1.2 2.9E-05 24.1 13.5 200 88-320 129-350 (360)
154 KOG2535 consensus 91.4 1.2 3E-05 24.1 13.8 173 88-260 150-357 (554)
155 PRK08745 ribulose-phosphate 3- 91.4 1.2 3E-05 24.1 18.4 195 91-319 16-217 (223)
156 PRK11613 folP dihydropteroate 91.2 1.2 3.1E-05 24.0 12.3 136 88-225 35-208 (282)
157 PRK08005 ribulose-phosphate 3- 91.2 1.2 3.1E-05 24.0 19.0 194 92-319 14-209 (210)
158 PRK12331 oxaloacetate decarbox 90.8 1.3 3.4E-05 23.7 18.1 174 89-276 152-343 (463)
159 PTZ00170 D-ribulose-5-phosphat 90.5 1.4 3.6E-05 23.5 17.1 196 91-318 17-215 (224)
160 TIGR00559 pdxJ pyridoxal phosp 90.2 1.5 3.8E-05 23.4 10.0 137 88-231 71-243 (265)
161 COG0854 PdxJ Pyridoxal phospha 90.1 1.5 3.9E-05 23.3 8.8 111 89-211 72-197 (243)
162 PRK07455 keto-hydroxyglutarate 90.0 1.5 3.9E-05 23.3 14.6 182 85-319 19-204 (210)
163 PRK12330 oxaloacetate decarbox 90.0 1.5 4E-05 23.3 19.9 165 89-268 153-336 (499)
164 PRK02083 imidazole glycerol ph 89.9 1.6 4E-05 23.2 11.9 202 92-324 31-251 (253)
165 COG0800 Eda 2-keto-3-deoxy-6-p 89.6 1.6 4.2E-05 23.1 11.2 105 84-218 18-123 (211)
166 cd00331 IGPS Indole-3-glycerol 88.9 1.8 4.7E-05 22.7 12.6 179 91-307 31-209 (217)
167 pfam00218 IGPS Indole-3-glycer 88.9 1.9 4.7E-05 22.7 14.4 178 92-307 69-246 (254)
168 TIGR02090 LEU1_arch isopropylm 88.8 1.9 4.8E-05 22.7 9.9 107 87-199 18-130 (371)
169 TIGR01182 eda 2-dehydro-3-deox 88.4 2 5E-05 22.5 10.0 106 84-219 13-120 (205)
170 PRK06843 inositol-5-monophosph 88.4 2 5.1E-05 22.5 8.1 115 91-218 152-275 (404)
171 PRK12344 putative alpha-isopro 88.0 2.1 5.3E-05 22.4 21.5 123 88-218 119-254 (530)
172 COG3623 SgaU Putative L-xylulo 87.9 2.1 5.4E-05 22.4 10.0 54 168-223 220-274 (287)
173 pfam01081 Aldolase KDPG and KH 87.9 2.1 5.4E-05 22.3 14.9 166 85-303 14-180 (196)
174 TIGR01496 DHPS dihydropteroate 87.8 2.2 5.5E-05 22.3 9.8 141 83-225 15-201 (268)
175 PRK13802 bifunctional indole-3 87.8 2.2 5.5E-05 22.3 14.3 178 92-307 71-248 (695)
176 PRK11121 nrdG anaerobic ribonu 87.7 2.2 5.6E-05 22.3 7.8 84 62-148 23-110 (154)
177 PRK05567 inositol-5'-monophosp 87.6 2.2 5.6E-05 22.2 9.4 68 94-166 230-298 (486)
178 PRK13957 indole-3-glycerol-pho 87.6 2.2 5.7E-05 22.2 14.0 177 92-307 62-238 (247)
179 PRK00748 1-(5-phosphoribosyl)- 87.2 2.3 6E-05 22.1 11.8 203 92-319 30-240 (241)
180 PRK09722 allulose-6-phosphate 87.0 2.4 6.1E-05 22.0 17.4 187 102-319 23-215 (227)
181 cd00959 DeoC 2-deoxyribose-5-p 87.0 0.75 1.9E-05 25.4 3.4 23 88-110 14-36 (203)
182 cd00423 Pterin_binding Pterin 86.8 2.5 6.3E-05 21.9 12.5 138 87-225 20-195 (258)
183 pfam00834 Ribul_P_3_epim Ribul 86.7 2.5 6.3E-05 21.9 16.4 181 90-302 11-197 (201)
184 COG0107 HisF Imidazoleglycerol 86.7 2.5 6.4E-05 21.9 11.8 208 91-324 30-253 (256)
185 PRK00278 trpC indole-3-glycero 85.9 2.7 6.9E-05 21.6 14.5 188 92-319 71-258 (261)
186 cd00452 KDPG_aldolase KDPG and 85.6 2.8 7.2E-05 21.5 10.7 163 85-301 10-173 (190)
187 COG3589 Uncharacterized conser 85.5 2.8 7.2E-05 21.5 9.1 113 89-201 14-175 (360)
188 PRK06552 keto-hydroxyglutarate 85.5 2.8 7.3E-05 21.5 16.8 182 86-318 20-203 (209)
189 TIGR00007 TIGR00007 phosphorib 85.5 2.9 7.3E-05 21.5 6.9 182 89-300 26-229 (241)
190 PRK05718 keto-hydroxyglutarate 84.8 3.1 7.8E-05 21.3 10.1 181 85-319 21-206 (212)
191 cd00739 DHPS DHPS subgroup of 84.2 3.2 8.3E-05 21.1 15.7 138 87-225 20-195 (257)
192 PRK12581 oxaloacetate decarbox 84.0 3.3 8.4E-05 21.1 19.8 174 89-277 161-353 (468)
193 PRK08091 ribulose-phosphate 3- 83.8 3.4 8.6E-05 21.0 16.2 198 90-320 24-233 (235)
194 cd00381 IMPDH IMPDH: The catal 83.3 3.5 9E-05 20.9 9.6 99 96-215 50-150 (325)
195 pfam00809 Pterin_bind Pterin b 83.1 3.6 9.1E-05 20.8 13.8 75 87-163 15-95 (208)
196 PRK09776 putative sensor prote 82.9 3.7 9.3E-05 20.8 12.4 14 310-323 1000-1013(1116)
197 PRK09358 adenosine deaminase; 82.8 3.7 9.4E-05 20.7 9.2 22 181-202 175-196 (333)
198 COG0826 Collagenase and relate 82.4 3.8 9.7E-05 20.7 13.7 77 87-165 45-144 (347)
199 PRK09426 methylmalonyl-CoA mut 82.4 3.8 9.7E-05 20.6 6.9 14 231-244 455-468 (715)
200 TIGR03572 WbuZ glycosyl amidat 82.0 3.9 0.0001 20.5 7.0 180 91-300 30-228 (232)
201 COG0134 TrpC Indole-3-glycerol 81.9 4 0.0001 20.5 12.3 177 94-308 69-245 (254)
202 PRK09432 metF 5,10-methylenete 81.7 4 0.0001 20.5 9.3 188 88-326 94-296 (296)
203 PRK13129 consensus 81.4 4.1 0.00011 20.4 18.6 185 89-303 31-239 (267)
204 PRK01033 imidazole glycerol ph 81.4 4.1 0.00011 20.4 7.8 181 92-302 31-229 (253)
205 cd03465 URO-D_like The URO-D _ 81.2 4.2 0.00011 20.4 12.5 180 31-226 35-244 (330)
206 TIGR01361 DAHP_synth_Bsub phos 81.1 4.2 0.00011 20.3 14.2 202 88-321 36-260 (262)
207 COG0685 MetF 5,10-methylenetet 81.0 4.3 0.00011 20.3 9.1 100 86-197 87-202 (291)
208 COG2876 AroA 3-deoxy-D-arabino 80.1 4.5 0.00012 20.1 12.8 201 88-320 56-277 (286)
209 PRK13119 consensus 79.8 4.6 0.00012 20.1 18.6 201 89-319 27-255 (261)
210 PRK13396 3-deoxy-7-phosphohept 79.5 4.8 0.00012 20.0 13.2 200 88-319 112-333 (352)
211 cd04731 HisF The cyclase subun 79.2 4.9 0.00012 19.9 12.9 197 92-319 28-242 (243)
212 PRK06015 keto-hydroxyglutarate 79.1 4.9 0.00012 19.9 9.1 181 85-319 21-206 (212)
213 COG0106 HisA Phosphoribosylfor 79.0 4.9 0.00013 19.9 10.1 196 91-319 31-240 (241)
214 PRK06857 consensus 78.2 5.2 0.00013 19.7 10.7 181 85-319 18-203 (209)
215 cd00740 MeTr MeTr subgroup of 77.5 5.4 0.00014 19.6 11.7 196 87-298 22-237 (252)
216 PRK08673 3-deoxy-7-phosphohept 76.5 5.8 0.00015 19.4 17.9 202 88-320 104-325 (335)
217 PRK13117 consensus 76.3 5.8 0.00015 19.4 19.1 185 89-303 29-238 (268)
218 PRK08904 consensus 76.2 5.9 0.00015 19.4 11.8 182 85-320 16-202 (207)
219 PRK13352 thiamine biosynthesis 76.1 5.9 0.00015 19.4 13.2 194 66-266 48-354 (433)
220 cd01320 ADA Adenosine deaminas 76.0 6 0.00015 19.3 9.2 22 181-202 171-192 (325)
221 PRK13307 bifunctional formalde 75.3 6.2 0.00016 19.2 14.7 177 121-320 183-378 (392)
222 CHL00200 trpA tryptophan synth 75.3 6.2 0.00016 19.2 18.8 186 89-303 27-235 (263)
223 TIGR00693 thiE thiamine-phosph 75.1 6.3 0.00016 19.2 15.0 167 91-297 15-192 (210)
224 TIGR02826 RNR_activ_nrdG3 anae 74.7 6.4 0.00016 19.1 7.7 95 45-147 10-113 (165)
225 pfam01964 ThiC ThiC family. Th 74.5 6.5 0.00017 19.1 13.1 196 64-266 44-349 (421)
226 PRK08883 ribulose-phosphate 3- 73.5 6.9 0.00018 18.9 19.4 196 91-318 12-212 (220)
227 COG5016 Pyruvate/oxaloacetate 73.0 7.1 0.00018 18.8 8.2 124 88-224 153-278 (472)
228 TIGR01060 eno phosphopyruvate 72.6 7.2 0.00018 18.8 9.8 38 181-222 347-386 (430)
229 PRK13209 L-xylulose 5-phosphat 72.4 7.3 0.00019 18.8 8.8 137 85-227 93-247 (283)
230 PRK13586 1-(5-phosphoribosyl)- 72.0 7.4 0.00019 18.7 7.0 201 58-300 7-218 (231)
231 PRK08782 consensus 71.3 7.7 0.0002 18.6 10.5 163 85-301 23-186 (219)
232 PRK05283 deoxyribose-phosphate 71.3 7.7 0.0002 18.6 11.3 134 88-266 81-222 (258)
233 pfam09370 TIM-br_sig_trns TIM- 71.2 7.7 0.0002 18.6 8.9 108 178-299 132-246 (268)
234 TIGR00735 hisF imidazoleglycer 71.1 7.7 0.0002 18.6 5.0 72 92-165 43-129 (312)
235 COG0274 DeoC Deoxyribose-phosp 71.0 7.8 0.0002 18.6 7.3 120 89-221 75-205 (228)
236 TIGR01108 oadA oxaloacetate de 70.7 7.9 0.0002 18.5 6.8 118 89-224 148-273 (616)
237 PRK07114 keto-hydroxyglutarate 70.4 8 0.0002 18.5 11.6 188 84-319 21-212 (223)
238 PRK02145 consensus 70.0 8.2 0.00021 18.4 14.4 201 92-324 32-255 (257)
239 COG2185 Sbm Methylmalonyl-CoA 69.9 8.2 0.00021 18.4 5.5 70 87-163 49-120 (143)
240 PRK00830 consensus 69.8 8.3 0.00021 18.4 14.8 218 91-324 34-271 (273)
241 PRK13753 dihydropteroate synth 69.4 8.4 0.00021 18.3 13.7 155 52-225 2-198 (279)
242 pfam04131 NanE Putative N-acet 68.8 8.7 0.00022 18.2 6.3 163 95-302 3-176 (192)
243 PRK08318 dihydropyrimidine deh 68.7 8.7 0.00022 18.2 16.3 193 120-323 81-310 (413)
244 PRK10060 RNase II stability mo 68.6 8.7 0.00022 18.2 14.8 10 188-197 380-389 (663)
245 PRK03659 glutathione-regulated 67.8 9.1 0.00023 18.1 4.4 46 250-299 473-518 (602)
246 pfam02662 FlpD Methyl-viologen 67.1 8.1 0.00021 18.4 3.7 18 281-298 41-58 (124)
247 cd02810 DHOD_DHPD_FMN Dihydroo 66.8 9.5 0.00024 18.0 14.9 170 120-297 80-270 (289)
248 PRK02227 hypothetical protein; 66.1 9.8 0.00025 17.9 10.4 129 89-227 65-203 (239)
249 PRK09282 pyruvate carboxylase 65.8 9.9 0.00025 17.9 19.3 68 209-277 262-342 (580)
250 TIGR02491 NrdG anaerobic ribon 65.5 10 0.00026 17.8 7.2 94 54-152 16-113 (158)
251 PRK13113 consensus 65.5 10 0.00026 17.8 19.1 202 89-320 29-256 (263)
252 PRK13587 1-(5-phosphoribosyl)- 65.3 10 0.00026 17.8 12.4 178 96-300 36-222 (234)
253 PRK13127 consensus 65.0 10 0.00026 17.8 19.5 187 88-303 22-231 (262)
254 COG4739 Uncharacterized protei 64.5 4.3 0.00011 20.3 1.9 21 56-76 76-97 (182)
255 TIGR01522 ATPase-IIA2_Ca calci 63.9 11 0.00027 17.6 7.1 148 66-225 437-610 (856)
256 pfam00977 His_biosynth Histidi 63.6 11 0.00028 17.6 7.7 178 91-300 29-221 (229)
257 COG0036 Rpe Pentose-5-phosphat 63.5 11 0.00028 17.6 19.0 194 91-318 16-214 (220)
258 TIGR01678 FAD_lactone_ox sugar 61.8 12 0.0003 17.4 4.5 135 85-220 19-206 (505)
259 pfam04481 DUF561 Protein of un 61.2 12 0.00031 17.3 18.5 205 87-319 23-232 (243)
260 TIGR01367 pyrE_Therm orotate p 61.0 8.8 0.00023 18.2 2.9 96 106-204 15-147 (205)
261 PRK07535 methyltetrahydrofolat 60.7 12 0.00031 17.3 16.4 188 87-298 21-227 (268)
262 PRK07328 histidinol-phosphatas 60.0 13 0.00032 17.2 10.9 198 94-325 20-254 (268)
263 PTZ00124 adenosine deaminase; 59.8 13 0.00032 17.1 7.5 95 185-297 208-306 (362)
264 cd02071 MM_CoA_mut_B12_BD meth 59.7 13 0.00032 17.1 7.4 67 88-162 37-106 (122)
265 PRK11059 regulatory protein Cs 59.4 13 0.00033 17.1 11.5 12 214-225 537-548 (642)
266 cd01311 PDC_hydrolase 2-pyrone 59.4 13 0.00033 17.1 17.5 185 89-303 29-222 (263)
267 pfam00113 Enolase_C Enolase, C 59.2 13 0.00033 17.1 8.1 34 181-218 213-248 (296)
268 PRK11359 cAMP phosphodiesteras 58.7 13 0.00034 17.0 15.6 13 311-323 681-693 (799)
269 cd00945 Aldolase_Class_I Class 58.3 13 0.00034 17.0 17.1 179 88-298 10-200 (201)
270 COG1908 FrhD Coenzyme F420-red 57.4 14 0.00035 16.9 5.0 17 181-197 75-92 (132)
271 TIGR02291 rimK_rel_E_lig alpha 57.1 12 0.00032 17.2 3.2 47 83-133 30-76 (320)
272 PRK08104 consensus 57.0 14 0.00036 16.8 16.4 182 85-319 21-206 (212)
273 PTZ00081 enolase (2-phospho-D- 56.4 14 0.00037 16.8 10.8 74 245-323 352-429 (442)
274 pfam07085 DRTGG DRTGG domain. 55.4 15 0.00038 16.7 5.7 51 267-327 40-90 (105)
275 pfam00490 ALAD Delta-aminolevu 54.9 15 0.00039 16.6 9.1 56 85-141 51-115 (322)
276 PRK03562 glutathione-regulated 54.3 15 0.00039 16.6 4.3 40 123-162 475-514 (615)
277 PRK04302 triosephosphate isome 54.2 16 0.0004 16.5 12.3 147 148-319 75-221 (223)
278 COG4822 CbiK Cobalamin biosynt 54.1 16 0.0004 16.5 12.4 84 136-223 169-255 (265)
279 TIGR01163 rpe ribulose-phospha 53.8 16 0.0004 16.5 17.1 183 92-306 13-204 (216)
280 PRK13131 consensus 53.3 16 0.00041 16.5 7.8 186 89-303 23-231 (257)
281 TIGR01090 apt adenine phosphor 53.1 10 0.00025 17.8 2.1 39 283-323 104-143 (175)
282 cd04732 HisA HisA. Phosphorib 53.1 16 0.00041 16.4 7.4 185 92-301 30-221 (234)
283 TIGR01501 MthylAspMutase methy 51.6 17 0.00044 16.3 4.8 45 283-328 71-117 (134)
284 pfam04476 DUF556 Protein of un 51.5 17 0.00044 16.3 9.7 127 91-227 67-203 (235)
285 cd00954 NAL N-Acetylneuraminic 51.0 17 0.00044 16.2 8.1 78 87-164 17-102 (288)
286 PRK08392 hypothetical protein; 50.4 18 0.00045 16.2 18.1 57 269-325 151-207 (215)
287 TIGR01369 CPSaseII_lrg carbamo 50.4 18 0.00045 16.2 4.3 88 136-223 649-758 (1089)
288 pfam02449 Glyco_hydro_42 Beta- 50.2 18 0.00046 16.1 5.4 70 251-320 273-373 (376)
289 TIGR02153 gatD_arch glutamyl-t 50.2 14 0.00037 16.8 2.6 42 177-225 293-337 (413)
290 COG0034 PurF Glutamine phospho 49.2 19 0.00047 16.0 3.3 31 290-322 346-376 (470)
291 COG0422 ThiC Thiamine biosynth 49.2 19 0.00047 16.0 13.0 74 187-266 248-351 (432)
292 pfam01207 Dus Dihydrouridine s 48.9 19 0.00048 16.0 13.4 166 45-220 18-204 (309)
293 pfam10758 DUF2586 Protein of u 48.9 12 0.00031 17.3 2.0 99 195-295 194-316 (363)
294 COG2200 Rtn c-di-GMP phosphodi 48.7 19 0.00048 16.0 12.4 175 17-227 47-229 (256)
295 cd03313 enolase Enolase: Enola 48.4 19 0.00049 15.9 8.7 53 246-300 336-389 (408)
296 COG0159 TrpA Tryptophan syntha 48.1 19 0.00049 15.9 18.0 201 88-319 28-258 (265)
297 PRK05096 guanosine 5'-monophos 47.8 19 0.0005 15.9 9.0 45 123-167 136-181 (347)
298 PRK13132 consensus 47.7 20 0.0005 15.9 17.7 202 88-320 22-245 (246)
299 TIGR02390 RNA_pol_rpoA1 DNA-di 47.6 10 0.00026 17.8 1.5 63 14-76 533-607 (901)
300 TIGR01430 aden_deam adenosine 47.2 20 0.00051 15.8 8.4 91 182-294 186-286 (346)
301 pfam01729 QRPTase_C Quinolinat 46.9 20 0.00051 15.8 7.5 16 147-162 89-104 (169)
302 PRK00077 eno phosphopyruvate h 46.8 20 0.00051 15.8 12.0 73 246-323 338-414 (427)
303 cd04740 DHOD_1B_like Dihydroor 46.8 20 0.00052 15.8 15.6 189 121-323 73-287 (296)
304 PRK09856 fructoselysine 3-epim 46.5 20 0.00052 15.8 10.9 168 85-268 84-273 (276)
305 COG1717 RPL32 Ribosomal protei 46.5 19 0.00047 16.0 2.7 63 138-200 58-126 (133)
306 cd04824 eu_ALAD_PBGS_cysteine_ 45.8 21 0.00053 15.7 5.3 57 85-141 45-110 (320)
307 PRK12653 fructose-6-phosphate 45.8 21 0.00053 15.7 11.6 140 123-296 41-184 (220)
308 smart00052 EAL Putative diguan 45.6 21 0.00054 15.7 9.7 96 120-227 130-226 (241)
309 TIGR00411 redox_disulf_1 redox 45.6 21 0.00054 15.7 3.8 37 283-319 41-80 (82)
310 pfam00343 Phosphorylase Carboh 45.5 14 0.00035 16.9 1.9 66 259-325 533-612 (712)
311 COG0149 TpiA Triosephosphate i 45.5 21 0.00054 15.7 13.4 171 118-305 44-237 (251)
312 PRK10551 hypothetical protein; 45.4 21 0.00054 15.7 13.3 10 314-323 403-412 (518)
313 PRK02271 methylenetetrahydrome 45.2 21 0.00054 15.6 4.3 41 272-317 279-319 (324)
314 PRK09427 bifunctional indole-3 44.7 22 0.00055 15.6 16.3 45 272-319 410-455 (459)
315 pfam09587 PGA_cap Bacterial ca 44.0 22 0.00057 15.5 5.9 135 145-297 62-208 (237)
316 cd00953 KDG_aldolase KDG (2-ke 43.7 22 0.00057 15.5 7.9 77 88-164 17-97 (279)
317 PRK11572 copper homeostasis pr 43.6 23 0.00058 15.5 12.8 118 84-216 66-186 (248)
318 pfam00701 DHDPS Dihydrodipicol 43.2 23 0.00058 15.4 16.0 78 87-164 18-102 (289)
319 PRK06740 histidinol-phosphatas 42.8 23 0.00059 15.4 8.3 111 89-199 59-217 (338)
320 cd03316 MR_like Mandelate race 42.4 24 0.0006 15.3 10.2 144 88-266 138-291 (357)
321 PRK13811 orotate phosphoribosy 42.0 24 0.00061 15.3 3.2 28 186-213 121-149 (170)
322 cd03319 L-Ala-DL-Glu_epimerase 41.7 24 0.00061 15.3 8.7 153 88-279 133-290 (316)
323 pfam00563 EAL EAL domain. This 41.6 24 0.00062 15.3 9.8 90 124-226 132-222 (233)
324 COG2350 Uncharacterized protei 41.6 24 0.0006 15.3 2.6 34 210-243 17-50 (92)
325 PRK13135 consensus 41.5 24 0.00062 15.3 18.8 182 89-303 29-236 (267)
326 TIGR03247 glucar-dehydr glucar 41.5 24 0.00062 15.3 8.9 107 86-205 177-288 (441)
327 PRK13810 orotate phosphoribosy 41.4 24 0.00062 15.2 2.9 13 186-198 139-151 (187)
328 PRK13136 consensus 41.3 24 0.00062 15.2 18.9 203 88-320 23-249 (253)
329 PRK07107 inositol-5-monophosph 40.6 25 0.00064 15.2 6.4 147 136-302 231-384 (497)
330 pfam00962 A_deaminase Adenosin 40.5 25 0.00064 15.2 8.0 39 179-219 174-212 (329)
331 COG3246 Uncharacterized conser 40.0 26 0.00065 15.1 17.9 229 68-324 8-283 (298)
332 PRK00455 pyrE orotate phosphor 39.5 26 0.00066 15.1 2.5 22 185-206 127-149 (200)
333 PRK08562 rpl32e 50S ribosomal 39.0 26 0.00067 15.0 2.7 64 137-200 56-125 (127)
334 TIGR00337 PyrG CTP synthase; I 38.9 27 0.00068 15.0 5.7 73 91-165 122-220 (571)
335 pfam01373 Glyco_hydro_14 Glyco 38.9 27 0.00068 15.0 4.2 12 257-268 251-262 (399)
336 cd04723 HisA_HisF Phosphoribos 38.8 27 0.00068 15.0 8.1 187 91-313 35-231 (233)
337 COG3867 Arabinogalactan endo-1 38.8 27 0.00068 15.0 4.8 95 146-242 157-259 (403)
338 TIGR02033 D-hydantoinase dihyd 37.4 28 0.00071 14.8 5.2 60 100-159 146-207 (466)
339 PRK13137 consensus 36.9 28 0.00073 14.8 15.1 167 122-317 85-260 (266)
340 cd00537 MTHFR Methylenetetrahy 36.9 28 0.00073 14.8 8.0 105 88-204 70-196 (274)
341 cd02812 PcrB_like PcrB_like pr 36.9 29 0.00073 14.8 8.9 177 88-302 12-207 (219)
342 cd00951 KDGDH 5-dehydro-4-deox 36.7 29 0.00073 14.8 7.9 77 88-164 18-100 (289)
343 TIGR03249 KdgD 5-dehydro-4-deo 36.1 29 0.00075 14.7 7.4 77 88-164 23-105 (296)
344 PRK13126 consensus 35.7 30 0.00076 14.7 12.4 144 148-319 85-228 (237)
345 cd02801 DUS_like_FMN Dihydrour 35.6 30 0.00076 14.7 13.4 158 107-301 56-215 (231)
346 pfam02219 MTHFR Methylenetetra 35.5 30 0.00076 14.6 7.9 185 87-321 80-286 (286)
347 cd00384 ALAD_PBGS Porphobilino 35.0 30 0.00078 14.6 9.4 55 85-140 45-106 (314)
348 TIGR00078 nadC nicotinate-nucl 35.0 30 0.00078 14.6 7.4 39 125-163 172-211 (276)
349 PRK13122 consensus 34.4 31 0.00079 14.5 8.1 194 94-320 16-236 (242)
350 PRK13139 consensus 34.0 32 0.00081 14.5 18.1 200 89-320 28-253 (254)
351 cd00513 Ribosomal_L32_L32e Rib 33.5 32 0.00082 14.4 2.3 65 136-200 34-106 (107)
352 PRK01362 putative translaldola 33.4 32 0.00082 14.4 9.5 102 173-296 81-182 (214)
353 COG4943 Predicted signal trans 33.3 32 0.00083 14.4 11.4 92 149-260 405-515 (524)
354 KOG1643 consensus 33.2 32 0.00083 14.4 6.9 157 89-268 19-193 (247)
355 COG0434 SgcQ Predicted TIM-bar 33.2 33 0.00083 14.4 10.3 212 85-319 24-256 (263)
356 pfam10443 RNA12 RNA12 protein. 33.1 33 0.00083 14.4 3.9 58 89-154 167-224 (428)
357 PRK10415 tRNA-dihydrouridine s 32.7 33 0.00084 14.4 11.9 123 88-219 74-214 (321)
358 PRK08350 hypothetical protein; 32.7 33 0.00084 14.3 10.6 34 181-218 266-301 (341)
359 TIGR00238 TIGR00238 lysine 2,3 32.5 33 0.00085 14.3 5.3 192 61-268 137-342 (357)
360 PRK03620 5-dehydro-4-deoxygluc 32.3 34 0.00086 14.3 8.0 76 88-163 19-100 (296)
361 TIGR02151 IPP_isom_2 isopenten 32.2 34 0.00086 14.3 4.8 102 179-294 169-294 (349)
362 cd00408 DHDPS-like Dihydrodipi 32.1 34 0.00086 14.3 17.7 178 87-299 14-201 (281)
363 TIGR01934 MenG_MenH_UbiE ubiqu 32.0 34 0.00087 14.3 2.8 111 184-325 109-225 (242)
364 COG0148 Eno Enolase [Carbohydr 32.0 34 0.00087 14.3 9.9 51 247-299 336-387 (423)
365 PRK13210 putative L-xylulose 5 31.9 34 0.00087 14.3 10.8 135 87-227 90-248 (284)
366 COG4109 Predicted transcriptio 31.8 34 0.00087 14.3 5.5 20 12-31 64-83 (432)
367 PRK13809 orotate phosphoribosy 31.4 35 0.00089 14.2 2.7 16 186-201 135-150 (206)
368 TIGR02773 addB_Gpos ATP-depend 31.0 16 0.00041 16.5 0.3 18 189-206 263-280 (1192)
369 PRK07695 transcriptional regul 30.8 36 0.00091 14.1 15.4 182 88-319 12-199 (202)
370 TIGR01236 D1pyr5carbox1 1-pyrr 30.6 26 0.00067 15.0 1.4 186 131-324 151-395 (551)
371 TIGR03555 F420_mer 5,10-methyl 30.3 36 0.00092 14.1 3.9 41 272-317 279-319 (325)
372 PRK06739 pyruvate kinase; Vali 30.2 36 0.00093 14.1 6.5 146 146-318 166-322 (352)
373 TIGR00789 flhB_rel FlhB domain 29.6 37 0.00095 14.0 2.5 28 186-222 30-57 (84)
374 TIGR03557 F420_G6P_family F420 29.4 37 0.00095 14.0 4.1 33 279-317 274-306 (316)
375 COG3684 LacD Tagatose-1,6-bisp 29.0 38 0.00097 13.9 4.4 45 278-323 242-288 (306)
376 cd03113 CTGs CTP synthetase (C 28.9 38 0.00098 13.9 5.9 72 217-294 152-230 (255)
377 cd04735 OYE_like_4_FMN Old yel 28.9 38 0.00098 13.9 7.1 140 151-299 150-313 (353)
378 TIGR01703 hybrid_clust hydroxy 28.7 36 0.00091 14.1 1.8 53 142-194 211-268 (567)
379 cd02072 Glm_B12_BD B12 binding 28.5 39 0.00099 13.9 4.8 28 187-218 99-126 (128)
380 PRK13121 consensus 28.4 39 0.00099 13.9 10.7 184 89-303 29-237 (265)
381 COG1410 MetH Methionine syntha 28.3 39 0.001 13.9 14.2 37 186-222 137-175 (842)
382 COG4464 CapC Capsular polysacc 28.3 39 0.001 13.9 10.2 73 88-160 17-97 (254)
383 pfam01208 URO-D Uroporphyrinog 28.2 39 0.001 13.8 13.4 69 147-226 181-254 (337)
384 TIGR01326 OAH_OAS_sulfhy O-ace 27.9 36 0.00093 14.1 1.7 83 81-165 121-204 (434)
385 pfam01301 Glyco_hydro_35 Glyco 27.9 40 0.001 13.8 3.8 59 87-145 20-85 (317)
386 TIGR00247 TIGR00247 conserved 27.8 28 0.00071 14.9 1.1 32 195-226 266-297 (373)
387 TIGR02045 P_fruct_ADP ADP-spec 27.7 24 0.00061 15.3 0.8 204 47-268 149-377 (466)
388 cd01948 EAL EAL domain. This d 27.4 41 0.001 13.8 10.0 93 122-226 131-224 (240)
389 pfam02677 DUF208 Uncharacteriz 27.4 41 0.001 13.8 6.6 30 182-211 89-120 (176)
390 TIGR01769 GGGP geranylgeranylg 27.4 41 0.001 13.8 5.9 183 88-299 10-212 (212)
391 PRK13111 trpA tryptophan synth 27.3 41 0.001 13.8 19.3 186 88-303 20-228 (256)
392 TIGR00585 mutl DNA mismatch re 27.3 41 0.001 13.8 3.4 12 62-73 61-72 (367)
393 PRK13812 orotate phosphoribosy 27.2 41 0.001 13.7 3.0 28 186-213 124-152 (174)
394 PRK09283 delta-aminolevulinic 27.1 41 0.001 13.7 5.5 55 85-140 53-114 (321)
395 PRK03170 dihydrodipicolinate s 27.1 41 0.001 13.7 8.7 77 88-164 19-102 (292)
396 PRK12376 putative translaldola 27.0 41 0.001 13.7 11.7 144 123-296 49-198 (238)
397 cd00956 Transaldolase_FSA Tran 26.6 42 0.0011 13.7 11.6 94 184-296 89-182 (211)
398 pfam08902 DUF1848 Domain of un 26.6 23 0.00059 15.4 0.5 45 89-133 57-106 (264)
399 TIGR02041 CysI sulfite reducta 26.5 42 0.0011 13.7 3.6 27 193-219 376-405 (550)
400 cd00952 CHBPH_aldolase Trans-o 25.9 43 0.0011 13.6 10.8 78 87-164 25-109 (309)
401 PRK04128 1-(5-phosphoribosyl)- 25.5 44 0.0011 13.5 7.0 187 92-315 31-226 (228)
402 COG1574 Predicted metal-depend 25.4 44 0.0011 13.5 5.6 27 178-204 316-342 (535)
403 PRK12999 pyruvate carboxylase; 25.3 44 0.0011 13.5 14.0 170 89-276 690-878 (1147)
404 TIGR01210 TIGR01210 conserved 25.2 44 0.0011 13.5 8.8 203 61-268 22-259 (329)
405 cd00311 TIM Triosephosphate is 25.2 44 0.0011 13.5 15.2 174 122-317 41-241 (242)
406 PRK09490 metH B12-dependent me 25.1 44 0.0011 13.5 14.1 115 183-298 468-601 (1229)
407 PRK10550 tRNA-dihydrouridine s 25.0 45 0.0011 13.5 8.7 119 88-218 72-213 (312)
408 cd06556 ICL_KPHMT Members of t 24.7 45 0.0012 13.4 7.8 62 150-226 94-167 (240)
409 cd04823 ALAD_PBGS_aspartate_ri 24.6 45 0.0012 13.4 6.6 57 85-141 48-112 (320)
410 COG1456 CdhE CO dehydrogenase/ 24.4 46 0.0012 13.4 14.0 249 5-275 32-313 (467)
411 PRK00043 thiE thiamine-phospha 24.1 46 0.0012 13.4 6.0 171 89-306 18-193 (210)
412 PRK01130 N-acetylmannosamine-6 23.8 47 0.0012 13.3 10.7 179 86-302 18-206 (222)
413 pfam08671 SinI Anti-repressor 23.7 47 0.0012 13.3 2.2 15 183-197 3-17 (30)
414 pfam08981 consensus 23.7 47 0.0012 13.3 8.9 118 89-215 10-146 (181)
415 TIGR02051 MerR Hg(II)-responsi 23.6 29 0.00074 14.7 0.5 30 181-210 41-71 (126)
416 PRK05458 guanosine 5'-monophos 23.4 48 0.0012 13.3 7.7 15 286-300 217-231 (326)
417 KOG0623 consensus 23.3 48 0.0012 13.3 6.3 13 314-326 477-489 (541)
418 COG3813 Uncharacterized protei 23.3 20 0.0005 15.9 -0.4 14 63-76 23-36 (84)
419 PRK08645 bifunctional homocyst 23.3 48 0.0012 13.3 20.8 166 32-225 81-290 (608)
420 PRK13227 consensus 23.0 49 0.0012 13.2 3.2 16 184-199 100-115 (228)
421 TIGR02706 P_butyryltrans phosp 23.0 49 0.0012 13.2 2.8 26 87-112 20-45 (295)
422 PRK07259 dihydroorotate dehydr 23.0 49 0.0012 13.2 15.4 188 122-323 76-290 (301)
423 COG0552 FtsY Signal recognitio 22.9 49 0.0012 13.2 7.4 18 151-168 160-177 (340)
424 TIGR00973 leuA_bact 2-isopropy 22.8 49 0.0013 13.2 18.5 204 86-318 18-251 (514)
425 pfam04898 Glu_syn_central Glut 22.7 49 0.0013 13.2 8.1 23 190-212 185-207 (288)
426 PRK13288 pyrophosphatase PpaX; 22.6 50 0.0013 13.2 3.9 15 185-199 87-101 (214)
427 TIGR03554 F420_G6P_DH glucose- 22.6 50 0.0013 13.2 4.0 32 279-316 290-321 (331)
428 pfam00290 Trp_syntA Tryptophan 22.5 50 0.0013 13.2 10.1 185 89-303 21-229 (258)
429 PRK10669 putative cation:proto 22.5 50 0.0013 13.2 3.9 48 250-301 490-537 (558)
430 COG2217 ZntA Cation transport 22.3 50 0.0013 13.1 6.2 115 123-268 540-660 (713)
431 PRK09568 DNA primase large sub 22.3 21 0.00054 15.7 -0.4 18 34-51 36-53 (306)
432 COG0011 Uncharacterized conser 22.2 50 0.0013 13.1 2.4 27 181-207 49-80 (100)
433 cd00530 PTE Phosphotriesterase 22.2 51 0.0013 13.1 9.1 24 185-209 163-186 (293)
434 pfam02702 KdpD Osmosensitive K 22.1 51 0.0013 13.1 6.4 186 92-294 21-209 (211)
435 PRK11057 ATP-dependent DNA hel 22.1 51 0.0013 13.1 4.8 32 178-209 313-344 (607)
436 TIGR01754 flav_RNR ribonucleot 22.0 47 0.0012 13.3 1.4 31 179-210 65-96 (145)
437 KOG2368 consensus 21.7 52 0.0013 13.1 5.0 220 87-324 36-278 (316)
438 PRK08462 biotin carboxylase; V 21.6 52 0.0013 13.0 8.4 11 189-199 262-272 (446)
439 TIGR01743 purR_Bsub pur operon 21.5 52 0.0013 13.0 3.7 34 284-319 187-220 (269)
440 PRK00042 tpiA triosephosphate 21.3 53 0.0013 13.0 7.6 179 122-320 44-249 (251)
441 cd00958 DhnA Class I fructose- 21.2 53 0.0013 13.0 11.3 134 157-319 88-232 (235)
442 cd04914 ACT_AKi-DapG-BS_1 ACT 21.1 53 0.0014 13.0 2.8 33 295-327 34-66 (67)
443 PRK06111 acetyl-CoA carboxylas 21.0 53 0.0014 13.0 8.4 10 88-97 61-70 (449)
444 TIGR00875 talC transaldolase, 21.0 53 0.0014 13.0 11.6 172 87-296 7-185 (216)
445 PRK13116 consensus 20.9 53 0.0014 13.0 19.0 186 89-303 29-239 (278)
446 PRK10329 glutaredoxin-like pro 20.9 34 0.00088 14.2 0.5 49 65-114 7-57 (81)
447 pfam06906 DUF1272 Protein of u 20.9 25 0.00063 15.2 -0.2 11 63-73 23-33 (57)
448 KOG1122 consensus 20.8 54 0.0014 12.9 4.7 40 224-266 225-264 (460)
449 PRK09206 pyruvate kinase; Prov 20.7 54 0.0014 12.9 5.8 37 187-223 262-304 (470)
450 PRK05294 carB carbamoyl phosph 20.7 54 0.0014 12.9 8.1 128 93-222 576-736 (1063)
451 pfam01884 PcrB PcrB family. Th 20.6 54 0.0014 12.9 5.2 177 89-302 20-214 (231)
452 PRK06096 molybdenum transport 20.5 55 0.0014 12.9 7.5 49 249-300 217-265 (284)
453 PRK09875 putative hydrolase; P 20.5 55 0.0014 12.9 9.8 14 147-160 165-178 (292)
454 COG3345 GalA Alpha-galactosida 20.5 55 0.0014 12.9 4.4 100 32-149 267-383 (687)
455 KOG3333 consensus 20.5 55 0.0014 12.9 3.2 13 64-76 3-16 (188)
456 TIGR00014 arsC arsenate reduct 20.4 55 0.0014 12.9 4.0 22 147-168 12-34 (114)
457 KOG0564 consensus 20.2 55 0.0014 12.9 6.8 75 88-163 89-186 (590)
458 TIGR02951 DMSO_dmsB dimethylsu 20.1 56 0.0014 12.8 1.9 24 56-80 89-112 (162)
No 1
>PRK06256 biotin synthase; Validated
Probab=100.00 E-value=0 Score=551.40 Aligned_cols=319 Identities=37% Similarity=0.681 Sum_probs=293.7
Q ss_pred HHHHHHHHHCCCC-CCCCHHHHHHHHCCCHHHH--HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 5732134200234-4789999999973991899--999999988862898569998645307868342321243354777
Q gi|254780485|r 4 STVVPEENPTKKP-KVWTSKEVFQIYNMPFNDL--LFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKS 80 (328)
Q Consensus 4 ~~~~~~~~~~~~~-e~ls~eea~~L~~~~~~el--~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~ 80 (328)
.-+-...+|+.++ ++||++||++|++.++.++ ++.+|+.+|++|+||.|++++++|++||.|++||+||+||+++++
T Consensus 3 ~~i~~~~~kvl~gg~~ls~eEal~Ll~~~d~dl~~L~~~A~~iR~~~~G~~v~l~~iin~kng~C~edC~yCaqs~~~~~ 82 (325)
T PRK06256 3 DILDKLAEKVLEGGEGLTKEEALALLNLPDDDLLELLAAAYEVRKHYFGKEVKLNSIINLKSGLCPEDCGYCSQSAGSSS 82 (325)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 79999999998089999999999998099376999999999999984899799998887618988999962989076789
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCCC
Q ss_conf 564100068579999999999649838997303688874428999998876213-6883241025699999998741576
Q gi|254780485|r 81 KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGL 159 (328)
Q Consensus 81 ~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG~ 159 (328)
...+|.+++.|+|++.|+.+.+.|++++|+|++++.+...++++++++++.||+ .++++++|+|.++++++++||+||+
T Consensus 83 ~~~~y~ll~~eeI~~~a~~a~~~G~~~~~lvtsg~~~~~~~~e~v~~~i~~Ik~~~~l~i~~slG~l~~e~~~~LkeAGv 162 (325)
T PRK06256 83 PIYRYAWLDIEEIVEAAKEAIENGAGRFCIVASGRGPSGREVDQVIEAVKAIKEETDLEICACLGLLTEEQAERLKEAGV 162 (325)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 97412789999999999999986998899986045897678999999999986228936887348899999999998699
Q ss_pred CEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC
Q ss_conf 06975134377773205888898999999999998798557707866898999999999999740888860205411204
Q gi|254780485|r 160 DYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328)
Q Consensus 160 ~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328)
++|++++||++++|+++||+|+|++|+++++.||++|+++|||+|||+|||++||++|++.||++|. ++||+|+|+|+
T Consensus 163 d~y~~nlETs~~~f~~i~~tht~~~Rl~ti~~a~~aGi~vcsG~i~GlGEt~edrve~l~~Lr~l~~--~sipin~l~P~ 240 (325)
T PRK06256 163 DRYNHNLETSRSYFPNVVTTHTYEDRVDTCEMVKAAGIEPCSGGIIGMGETLEDRAEHAFFLKELDA--DSIPINFLNPI 240 (325)
T ss_pred CEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCC--CEEECCCCEEC
T ss_conf 8886664406876388689988999999999999859964664376689998999999999971999--88954670106
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 87412445687989999999999996868721423115651656899999809988997786651588898999999998
Q gi|254780485|r 240 PGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 240 ~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
+||||++.+++++.|.+|+||++||++|++.|++++||+.+..+.+.+ +.+||||+|+|+|+ |+.|+++++|++||++
T Consensus 241 ~gTpl~~~~~l~~~e~lr~iAi~Rl~~P~~~Ir~agGr~~~~~~~~~~-~~~gan~~~~G~~l-Tt~g~~~~~d~~~i~~ 318 (325)
T PRK06256 241 KGTPLEDLPELTPLECLKTIAIFRLINPDKEIRIAGGREIALRSLQPL-ALKGANSIFVGNYL-TTLGQPAEADLKMIED 318 (325)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-HHHHCHHHEECCCC-CCCCCCHHHHHHHHHH
T ss_conf 998668899989999999999999978995489707855225567999-98617351466653-7899786799999998
Q ss_pred CCCCCCC
Q ss_conf 2985324
Q gi|254780485|r 320 LGLIPDL 326 (328)
Q Consensus 320 ~G~~P~~ 326 (328)
+||+|.+
T Consensus 319 lg~~~~~ 325 (325)
T PRK06256 319 LGFEIKL 325 (325)
T ss_pred CCCCCCC
T ss_conf 6994009
No 2
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=512.33 Aligned_cols=311 Identities=54% Similarity=0.918 Sum_probs=299.3
Q ss_pred CCCCCCHHHHHHHHCCCHHH-HHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 34478999999997399189-99999999888628985699986453078683423212433547775641000685799
Q gi|254780485|r 15 KPKVWTSKEVFQIYNMPFND-LLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQV 93 (328)
Q Consensus 15 ~~e~ls~eea~~L~~~~~~e-l~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei 93 (328)
.++.||.+|++.||+.|+.+ +++.||+..|++|+|+.|.+++++|++|+.|+.+|+||+||++++++...+++++.|+|
T Consensus 10 ~~~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeI 89 (335)
T COG0502 10 RGERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEI 89 (335)
T ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHH
T ss_conf 04676799999997288626899999999998548885899888873348889889876001047679823312899999
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 9999999964983899730368887442899999887621-368832410256999999987415760697513437777
Q gi|254780485|r 94 LKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERF 172 (328)
Q Consensus 94 ~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~ 172 (328)
++.|+.+++.|+.++|++++|++ ..++++++.++++.++ +.++++++++|.++++++++|+++|++.|+||+||++++
T Consensus 90 le~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~ 168 (335)
T COG0502 90 LEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEF 168 (335)
T ss_pred HHHHHHHHHCCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCHHHEECCCCCCHHH
T ss_conf 99999999749950799873167-77448999999999998469286402587999999999971811330355569788
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCH
Q ss_conf 32058888989999999999987985577078668989999999999997408888602054112048741244568798
Q gi|254780485|r 173 YPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDP 252 (328)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~ 252 (328)
|++++|+++|++|+++++.++++|+++|||+|+|+|||.+||++++..|+++.. +++||+++|+|+|||||++.+++++
T Consensus 169 y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~~ 247 (335)
T COG0502 169 YENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDP 247 (335)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCCCCCCCCCH
T ss_conf 756578988889999999999809850451276189988899999999971899-8854232103799986665899998
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 999999999999686872142311565165689999980998899778665158889899999999829853247
Q gi|254780485|r 253 IEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 253 ~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328)
.|++|+||++||+||+..|++++||+++++++|.++|.+|||++++|+.++|+.|+..++|.+|++++|+.|...
T Consensus 248 ~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~ 322 (335)
T COG0502 248 FEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELL 322 (335)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 999999999999778645672588352258889999984566356524476248998036899999738872114
No 3
>PRK08444 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=500.07 Aligned_cols=312 Identities=18% Similarity=0.220 Sum_probs=273.3
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 134200234478999999997399189999999998886289856999864530-7868342321243354777564100
Q gi|254780485|r 8 PEENPTKKPKVWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASK 86 (328)
Q Consensus 8 ~~~~~~~~~e~ls~eea~~L~~~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~ 86 (328)
.+.+|+.+++|||.+|++.||+.|+.+|+..|+.+|++ ++||.|+|+.++|+| ||+|+.+|+||||+++++. +..+
T Consensus 2 dIleKv~~gerls~ee~~~L~~~dl~~L~~~Ad~~R~~-~~G~~vtfv~n~~IN~TNiC~~~C~FCaF~r~~~~--~~aY 78 (353)
T PRK08444 2 NLLEKLENNERLNQEEAVALYDLDLFTLGKYADRKRTK-LHGKKVYFNINRHINPTNICADVCKFCAFSAHRKN--PNPY 78 (353)
T ss_pred CHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCE
T ss_conf 48889876998999999999868999999999999998-77991699820574566445688856756168999--9876
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CCCCHHHHHH
Q ss_conf 068579999999999649838997303688874428999998876213688324102-------------5699999998
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GMLSFEQAQI 153 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~~~~~~~~~ 153 (328)
.++.|||++.++++.+.|++++++|+|.++ ..+++||++++|.+|+..|.++++. |...++.+.+
T Consensus 79 ~ls~eei~~~~~ea~~~G~tev~i~GG~~P--~~~~eyY~~l~r~ik~~~P~i~i~aft~~EI~~~a~~~~~s~~evL~~ 156 (353)
T PRK08444 79 TMSHEEILEIVKESVKRGIKEVHIVSAHNP--NYGYQWYLEIFKMIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLED 156 (353)
T ss_pred ECCHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 669999999999999759878998147598--997588999999999858850477177899999999809999999999
Q ss_pred HHCCCCCEE-EEECCC-CHHHHHCCCCCC-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 741576069-751343-777732058888-98999999999998798557707866898999999999999740888860
Q gi|254780485|r 154 LSKAGLDYY-NHNIDT-SERFYPHVTTTH-TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPES 230 (328)
Q Consensus 154 Lk~aG~~~~-~~~let-~~~~~~~~~~~~-~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~ 230 (328)
||+||++++ .-..|. +++.++.+||++ +.++|+++++.||++|++++|||||||+||++||++||..||++|+.+.+
T Consensus 157 Lk~AGL~slpGggAEIl~d~VR~~I~p~K~~~~~Wl~i~~~AH~lGi~ttaTmmyGhvEt~e~rv~HL~~lR~lQd~tgG 236 (353)
T PRK08444 157 MLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKQSNATMLFGHIENREHRIDHMLRLRDLQDKTGG 236 (353)
T ss_pred HHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99819875789872003777897618998999999999999998299664146778879999999999999983655798
Q ss_pred EECCCEEE----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEE
Q ss_conf 20541120----48741244568798999999999999686872142311565165689999980998---899778665
Q gi|254780485|r 231 IPINLLIP----IPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLL 303 (328)
Q Consensus 231 v~~~~~~p----~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~ 303 (328)
|. .|+| .++|+|+..+.+++.|+||++|||||||+| +.+||++|+++|.++.|++|.+||| |||++|+++
T Consensus 237 F~--~FIPl~f~~~~t~l~~~~~~t~~e~Lr~~AisRl~Ldn-i~~IqasWv~~G~~~aq~aL~~GanDlggT~~eE~i~ 313 (353)
T PRK08444 237 FN--AFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDN-IPHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQ 313 (353)
T ss_pred EE--EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 35--89765657899857778999989999999999998638-7861544562378999999966996775555545244
Q ss_pred CCCC------CCHHHHHHHHHHCCCCCCCC
Q ss_conf 1588------89899999999829853247
Q gi|254780485|r 304 TAKN------PSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 304 t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328)
.++| .+.++++.||+++|++|+.+
T Consensus 314 ~~aGa~~~~~~~~~~l~~~I~~aG~~P~eR 343 (353)
T PRK08444 314 SAAGAKSAHGLSKEDFIFLIKDSGFIPVER 343 (353)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 212589988899999999999859975521
No 4
>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2.8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process.
Probab=100.00 E-value=0 Score=499.67 Aligned_cols=296 Identities=50% Similarity=0.913 Sum_probs=275.0
Q ss_pred HHCCC---HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCHH--
Q ss_conf 97399---189999999998886289856999864530786834232124335477----------756410006857--
Q gi|254780485|r 27 IYNMP---FNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNK----------SKLKASKLINVD-- 91 (328)
Q Consensus 27 L~~~~---~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~----------~~~~~~~~~~~E-- 91 (328)
||+.| ..+|++.|..++|+.|.|+.|.+|.++|++|+.|++||.||+||.+++ +...-+++...+
T Consensus 1 l~~~p~E~~l~Ll~~A~~~~r~~~~~~~v~Lc~i~N~KSG~C~EDC~YCsQSs~~~CniPiYPlk~~~~~~~~~~~~~De 80 (350)
T TIGR00433 1 LYETPDEDLLDLLYEAFQIHRKHFNPRKVQLCTIMNIKSGGCPEDCGYCSQSSRSKCNIPIYPLKDTGLPIERLKKVDDE 80 (350)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 98887513799999999999873374802342110122185766776788555266886224566741789988767654
Q ss_pred ------------HHHHHHHHHHHCCC---------EEEEEECCCCCCCCCC------HHHHHHHHHHHCC--CCCCEEEE
Q ss_conf ------------99999999996498---------3899730368887442------8999998876213--68832410
Q gi|254780485|r 92 ------------QVLKEAKNAKENGA---------TRYCMGAAWREPKERD------LSIIVDMIKGVKS--LGLETCMT 142 (328)
Q Consensus 92 ------------ei~~~a~~~~~~G~---------~~~~l~~~~~~~~~~~------~~~~~e~i~~i~~--~~~~i~~~ 142 (328)
+|+++|+.+...|. .+||||++|++|..++ .+++.++.+.+++ .++++|++
T Consensus 81 Cskisssier~k~~l~eA~~a~~~G~PnrGfPlWv~rFClvasGR~~~~~~~~dref~~~v~~~~~~~~~ee~GL~~C~~ 160 (350)
T TIGR00433 81 CSKISSSIEREKEILEEARAAKAAGAPNRGFPLWVTRFCLVASGRGPKDRESKDREFIEIVEAVVKIVEEEELGLKTCAT 160 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHC
T ss_conf 32222111111378999999997087888853035014655417888877742202889999999997520037122320
Q ss_pred CCCCCHHHHHHHHCCCCCEEEEECC-CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 2569999999874157606975134-377773205888898999999999998798557707866898999999999999
Q gi|254780485|r 143 LGMLSFEQAQILSKAGLDYYNHNID-TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTL 221 (328)
Q Consensus 143 ~g~~~~~~~~~Lk~aG~~~~~~~le-t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~l 221 (328)
+|.++.++++.||+||+|.|+||+| |++++|++++++|||+||++|++.|+++||++|||.|||||||++||++.+..|
T Consensus 161 LG~l~~eqa~~LKdAGld~YNHNl~~TS~~~y~~I~sThty~DR~~T~~~~k~aGl~~CsGGI~GlgEt~~DrI~l~~~L 240 (350)
T TIGR00433 161 LGLLDPEQAKQLKDAGLDRYNHNLDETSQEYYSKIISTHTYDDRVDTVKNAKEAGLKVCSGGILGLGETWEDRIGLALAL 240 (350)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH
T ss_conf 37768899998886388611167367878766873432307767999999997388724462345898889999999997
Q ss_pred HHCCCCCCEEECCCEEECCCCC----CCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHH---HHHHHC
Q ss_conf 7408888602054112048741----244--5687989999999999996868721423115651656899---999809
Q gi|254780485|r 222 ANLSTPPESIPINLLIPIPGSK----FEE--NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQA---LCFFSG 292 (328)
Q Consensus 222 r~l~~~~~~v~~~~~~p~~gt~----l~~--~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~---~~L~~G 292 (328)
++|...+++||+|+|+|++||| +++ ...+++.|.||+||++|++||+..|++++||+....+.++ +.+++|
T Consensus 241 ~~L~p~peSvPiN~L~~~~GTP~~E~L~~~~~~~L~~~~~Lk~iA~ari~mP~~~iRlagGR~~~m~e~~~kea~~~~ag 320 (350)
T TIGR00433 241 ANLSPEPESVPINFLVKIEGTPAYEKLADGEVKKLSADDALKTIALARIIMPKAEIRLAGGREVNMKELQQKEAMCFMAG 320 (350)
T ss_pred HCCCCCCCEECCCCEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCHHHHHHHHHH
T ss_conf 52776787011132026888853443158886733889999999998865431100100251450476754899999984
Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 988997786651588898999999998298
Q gi|254780485|r 293 ANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322 (328)
Q Consensus 293 aN~~~~g~~~~t~~g~~~~~~~~~i~~~G~ 322 (328)
+||||+|+|+||++....++|.+|+.++||
T Consensus 321 ~Nsif~G~yLtT~g~~~eD~D~~~l~~lgL 350 (350)
T TIGR00433 321 ANSIFVGDYLTTTGQPPEDEDKKLLAKLGL 350 (350)
T ss_pred HHHHEECCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 212304640024865886178999986179
No 5
>PRK08508 biotin synthase; Provisional
Probab=100.00 E-value=0 Score=491.61 Aligned_cols=274 Identities=40% Similarity=0.653 Sum_probs=262.5
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 85699986453078683423212433547775641000685799999999996498389973036888744289999988
Q gi|254780485|r 50 NHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMI 129 (328)
Q Consensus 50 ~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i 129 (328)
++|.+|+++|++||.|++||+||+||+++++++++|.+++.|+|++.|+.+++.|+.++++|++|+.+..++++++++++
T Consensus 2 ~~v~lcsi~n~KSG~C~edC~yCaQs~~~~t~i~~Y~l~~~eeIl~~A~~a~~~G~~rf~lv~sg~~~~~~~~e~v~~~v 81 (279)
T PRK08508 2 QEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKEIEQIVQEAKMARANGALGFCLVTAGRGLDDKKLEYVAKAA 81 (279)
T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 64799888734137999878644481767999861078999999999999997599768999823688754499999999
Q ss_pred HHHCCC--CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 762136--883241025699999998741576069751343777732058888989999999999987985577078668
Q gi|254780485|r 130 KGVKSL--GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL 207 (328)
Q Consensus 130 ~~i~~~--~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~ 207 (328)
+.||+. ++.+++|+|.++++++++||+||+++|++|+||++++|+++|++|+|++|+++++.++++|+.+|||+|+|+
T Consensus 82 ~~Ik~~~~~l~~c~slG~l~~e~~~~LkeAGvdrY~hNlETs~~~y~~I~tThty~dRl~tl~~~k~aGl~vCsGgIiGl 161 (279)
T PRK08508 82 KAVKKEVPGLHLIACNGMASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHSWEERFQTCLNAKEAGLGLCSGGIFGL 161 (279)
T ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEC
T ss_conf 99863379935761178579999999998397123076676768757658998889999999999981994867854478
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHH
Q ss_conf 98999999999999740888860205411204874124456879899999999999968687214231156516568999
Q gi|254780485|r 208 GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQAL 287 (328)
Q Consensus 208 gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~ 287 (328)
|||++||+++++.||+|+ +++||+|+|+|+|||||+ .+++++.|.||+||++||++|++.|++++||+.+.+++|.+
T Consensus 162 GEt~edrve~a~~L~eL~--~dsVPIN~liPi~GTPLe-~~~l~~~e~lr~iAl~RlilP~a~Ir~agGRe~~l~~~q~~ 238 (279)
T PRK08508 162 GESWEDRISMLKSLASLS--PHSTPINFFIPNPALPLD-TPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238 (279)
T ss_pred CCCHHHHHHHHHHHHHCC--CCEECCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCHHHHHH
T ss_conf 999899999999998389--987515676589999888-89999999999999999978987656246524455636999
Q ss_pred HHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 9980998899778665158889899999999829853247
Q gi|254780485|r 288 CFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 288 ~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328)
+|.+|||++|+|+|+ |+.|+++++|.+||+++||+.+.+
T Consensus 239 ~~~aGaN~i~~G~yL-Tt~G~~~~~D~~mi~~lG~~v~~~ 277 (279)
T PRK08508 239 IFEAGANAIVIGDYL-TTKGEAPKKDIEKLKSLGFEFASS 277 (279)
T ss_pred HHHHCCCEEEECCCC-CCCCCCHHHHHHHHHHCCCEEECC
T ss_conf 998468468886652-789978679999999869934124
No 6
>PRK07094 biotin synthase; Provisional
Probab=100.00 E-value=0 Score=476.92 Aligned_cols=300 Identities=23% Similarity=0.379 Sum_probs=264.4
Q ss_pred CCHHHHHHHHCCCHH---HHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 899999999739918---99999999988862898569998645307868342321243354777564100068579999
Q gi|254780485|r 19 WTSKEVFQIYNMPFN---DLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLK 95 (328)
Q Consensus 19 ls~eea~~L~~~~~~---el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~ 95 (328)
||++|+++|++..+. +.++.+|+..|++++||.|+++++||+ ||+|++||+||+|+++++ ..++| .++.|||++
T Consensus 1 Lt~eE~l~LL~~~d~~~l~~L~~~A~~iR~~~~G~~V~l~~iIn~-Sn~C~edC~yC~~~~~n~-~~~rY-~Ls~eeI~~ 77 (323)
T PRK07094 1 LSRDEILELLSNDDEEELKYLFKAADEVRKKYVGDEVHLRGLIEF-SNYCRRNCLYCGLRRSNK-NIKRY-RLSPEEILE 77 (323)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE-CCCCCCCCCCCCCCCCCC-CCCCC-CCCHHHHHH
T ss_conf 988999998615998999999999999999977996899987984-689999993478766789-97743-799999999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC-HHHH
Q ss_conf 999999649838997303688874428999998876213-68832410256999999987415760697513437-7773
Q gi|254780485|r 96 EAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-ERFY 173 (328)
Q Consensus 96 ~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~-~~~~ 173 (328)
.|+++++.|++++++++|. ++ ..+.++++++++.||+ .++.+++|+|.++.++|++||+||+++|++++||+ +++|
T Consensus 78 ~A~~a~~~G~~~~~lqsG~-~~-~~~~e~~~~ii~~Ik~~~~l~i~lSlG~l~~e~~~~Lk~AG~dry~~nlETs~~~~y 155 (323)
T PRK07094 78 CAKKAYELGYGTIVLQSGE-DP-YYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADRELY 155 (323)
T ss_pred HHHHHHHCCCCEEEEECCC-CC-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCHHHH
T ss_conf 9999998699889996489-98-866999999999986059945997578799999999998597744124565698986
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCH
Q ss_conf 2058888989999999999987985577078668-989999999999997408888602054112048741244568798
Q gi|254780485|r 174 PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDP 252 (328)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~ 252 (328)
+++||+++|++|++++++||++|+++|||+|||+ |||++||++|++.||+||. ++||+++|+|+|||||++.+++++
T Consensus 156 ~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~iiGlpGET~edr~~~l~~LreL~~--~~v~i~~fiP~~gTPl~~~~~~~~ 233 (323)
T PRK07094 156 EKLHPGMSFENRIQCLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDL--DMIGIGPFIPHPDTPLADEKGGSL 233 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEECCCCCCCCCCCCCCCCCCCCH
T ss_conf 775899998999999999998398104302779899999999999999983799--886772551799999889999799
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC--------CEEECCC----CCC----HHHHHHH
Q ss_conf 99999999999968687214231156516568999998099889977--------8665158----889----8999999
Q gi|254780485|r 253 IEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG--------DTLLTAK----NPS----YNKDTIL 316 (328)
Q Consensus 253 ~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g--------~~~~t~~----g~~----~~~~~~~ 316 (328)
++.||++|++||++|++.|+.+++|.++++++++++|.+|||.+|-. .|.+--+ +.+ .+...++
T Consensus 234 ~~~lr~iAl~Rli~P~a~Ipattal~~l~~~g~~~~l~aGANvvmp~~tp~~~r~~y~ly~~k~~~~~~~~~~~~~~~~~ 313 (323)
T PRK07094 234 ELTLKVLALARLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPNLTPTEYRKLYQLYPGKICTGEEAAECRECIEAR 313 (323)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999978766574446532249889999987688664788994676257526799876887899999999999
Q ss_pred HHHCCCCCC
Q ss_conf 998298532
Q gi|254780485|r 317 FNRLGLIPD 325 (328)
Q Consensus 317 i~~~G~~P~ 325 (328)
|+++|+++.
T Consensus 314 ~~~~g~~~~ 322 (323)
T PRK07094 314 IESIGRTVG 322 (323)
T ss_pred HHHCCCCCC
T ss_conf 997286468
No 7
>PRK05927 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=480.42 Aligned_cols=310 Identities=15% Similarity=0.164 Sum_probs=263.6
Q ss_pred CCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 023447899999999739-9189999999998886289856999864530-78683423212433547775641000685
Q gi|254780485|r 13 TKKPKVWTSKEVFQIYNM-PFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINV 90 (328)
Q Consensus 13 ~~~~e~ls~eea~~L~~~-~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~ 90 (328)
+..+||||.+|++.||+. |+.+|+..|+.+|+++++||.|+|..++|+| ||+|+..|+||||++.++. +..+.++.
T Consensus 1 ~~~~~Rls~~e~~~L~~~~dl~~l~~~A~~~R~~~~~g~~Vtyv~n~~iN~TNvC~~~C~FCaF~r~~~~--~~ay~ls~ 78 (350)
T PRK05927 1 MNLPKRISFQEGLELFLSSPLEELQERADSLRKQRYPQNTVTYVLDANPNYTNICKIDCTFCAFYRKPRS--SDAYLLSF 78 (350)
T ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCC--CCCCCCCH
T ss_conf 9703469999999986179999999999999997559986999620487741256576934774258999--87532799
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CCCCHHHHHHHHCC
Q ss_conf 79999999999649838997303688874428999998876213688324102-------------56999999987415
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GMLSFEQAQILSKA 157 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~~~~~~~~~Lk~a 157 (328)
|||+++++++.+.|++++|+|+|.++ ..+++||.++++.+|+..+.++++. |...++.+++|++|
T Consensus 79 eei~~~~~e~~~~G~tEv~i~GG~~P--~l~~eyy~~l~r~ik~~~P~i~ihafs~~Ei~~~a~~~g~s~~e~L~~Lk~A 156 (350)
T PRK05927 79 DEFRSLMQRYVSSGVKTVLLQGGVHP--QLGIDYLEELVRITVQEFPSLHPHFFSAVEIAHAAQVSGISTEQALQRLWDA 156 (350)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 99999999998669838998268899--9986999999999997488866566999999999988599999999999973
Q ss_pred CCCEE-EEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-C
Q ss_conf 76069-751343-7777320588-889899999999999879855770786689899999999999974088886020-5
Q gi|254780485|r 158 GLDYY-NHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-I 233 (328)
Q Consensus 158 G~~~~-~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~ 233 (328)
|++++ .-.-|. +++...++|| |.+.++|+++++.||++|+++++||||||+||++||++||..||+||+.|.+|. +
T Consensus 157 GL~slPGgGAEIl~d~VR~~I~p~K~s~~~Wl~i~~~AH~lGi~ttaTmlyGhiEt~e~ri~HL~~lR~lQdeTgGF~~F 236 (350)
T PRK05927 157 GQRTIPGGGAEILSERVRKIISPKKMGPDGWINFHKLAHRLGFRSTATMMFGHVENPEDILLHLQTLRDAQDENPGFYSF 236 (350)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_conf 76768998750168777751488888999999999999985997520246368799999999999999987650987999
Q ss_pred CCEEE-CCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCC
Q ss_conf 41120-487412445--68798999999999999686872142311565165689999980998---8997786651588
Q gi|254780485|r 234 NLLIP-IPGSKFEEN--KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKN 307 (328)
Q Consensus 234 ~~~~p-~~gt~l~~~--~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g 307 (328)
-+|.+ ..+|+|... ...+++++||++|+|||||+|. .+||++|+++|.++.|++|.+||| |||++|++..++|
T Consensus 237 Ipl~F~p~nt~l~~~~~~~~~~~~~Lr~~AvaRl~Ldn~-~hIqa~Wv~~G~~~aq~aL~~GanDlgGT~~eE~I~~aaG 315 (350)
T PRK05927 237 IPWSYKPGNTALGRRVPQQASPELYYRILALARIFLDNF-DHIAASWFGEGKEEGAKGLHYGADDFGGTILDESVHKCTG 315 (350)
T ss_pred EECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEECEEECCHHHHHHHHHCCCCCCCCCCEEEEEECCCC
T ss_conf 946765488746542788998457599999999970698-8637240525799999999669976765530004643228
Q ss_pred C----CHHHHHHHHHHCCCCCCCC
Q ss_conf 8----9899999999829853247
Q gi|254780485|r 308 P----SYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 308 ~----~~~~~~~~i~~~G~~P~~~ 327 (328)
. +.++++++|+++|++|+.+
T Consensus 316 ~~~~~~~~el~~~I~~aG~~P~eR 339 (350)
T PRK05927 316 WDLQSSEEEICAMIRSEGFIPVER 339 (350)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 998999999999999859973012
No 8
>PRK07360 FO synthase subunit 2; Reviewed
Probab=100.00 E-value=0 Score=473.26 Aligned_cols=323 Identities=16% Similarity=0.253 Sum_probs=268.7
Q ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCC
Q ss_conf 98557321342002344789999999973991----89999999998886289856999864530-78683423212433
Q gi|254780485|r 1 MSRSTVVPEENPTKKPKVWTSKEVFQIYNMPF----NDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQS 75 (328)
Q Consensus 1 ~~~~~~~~~~~~~~~~e~ls~eea~~L~~~~~----~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~ 75 (328)
|+...+-.+.+|+.+++|||++|++.||+..+ .+|+..|+++ |++++|+.|+|+.++||| ||+|+.+|+||+|+
T Consensus 2 ~~~~~~~~Il~Kv~~GerLs~eeal~L~~~~d~~~l~~L~~~A~~v-R~~~~Gd~Vtfv~n~~In~TNiC~~~C~fCaF~ 80 (375)
T PRK07360 2 MTDQIPEDILERAFKGKDLSKEDALELLEDTEPRNIFEILELADRL-RAEQVGDTVTYVVNRNINFTNICEGHCGFCAFR 80 (375)
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHCCCEEEEEEEECCCHHHHHHCCCCCCCCC
T ss_conf 8751299999999769999999999998469857899999999999-998669969998252665617987089827340
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CCHHHHHHHHHHHCCCCCCEEEEC---------
Q ss_conf 54777564100068579999999999649838997303688874---428999998876213688324102---------
Q gi|254780485|r 76 VHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE---RDLSIIVDMIKGVKSLGLETCMTL--------- 143 (328)
Q Consensus 76 ~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~---~~~~~~~e~i~~i~~~~~~i~~~~--------- 143 (328)
+.++. ...+.+++|||++.++++.+.|++++++|+|.++... ..++||.++++.+++..+.++++.
T Consensus 81 r~p~~--~~ay~ls~eEi~~~~~~a~~~G~tEv~~~gG~~P~l~~~~~~~~~y~~~~~~ik~~~p~i~i~a~s~~Ei~~~ 158 (375)
T PRK07360 81 RDKGD--PGAFWLDIEEILEKAAEAVKAGATEVCIQGGLHPAADLNGSSLDFYLEILKAIKAEFPGIHLHAFSPQEVQFA 158 (375)
T ss_pred CCCCC--CCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 78899--7660278999999999998658808997688783445464518999999999998689855640899999998
Q ss_pred ----CCCCHHHHHHHHCCCCCEE-EEECCC-CHHHHHCCCCCC-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH
Q ss_conf ----5699999998741576069-751343-777732058888-989999999999987985577078668989999999
Q gi|254780485|r 144 ----GMLSFEQAQILSKAGLDYY-NHNIDT-SERFYPHVTTTH-TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRID 216 (328)
Q Consensus 144 ----g~~~~~~~~~Lk~aG~~~~-~~~let-~~~~~~~~~~~~-~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~ 216 (328)
|...++.+.+|++||++++ ....|. +++.++.+||++ +.++|+++++.||++|+++|||||||||||++||++
T Consensus 159 a~~~g~~~~e~l~~LkeAGl~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~~~Ah~lGi~ttatmL~Gh~Et~eerv~ 238 (375)
T PRK07360 159 AREDGLSYEEVLKALKDAGLDSMPGTAAEILDDEVRRIICPEKITTAEWIEIVKTAHKLGLPTTSTMMYGHIETPEHRID 238 (375)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH
T ss_conf 86649988999999997698758887621034556646598988999999999999982997010026189899999999
Q ss_pred HHHHHHHCCCCCCEEE-C--CCEEECCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHH
Q ss_conf 9999974088886020-5--41120487412445----687989999999999996868721423115651656899999
Q gi|254780485|r 217 MLLTLANLSTPPESIP-I--NLLIPIPGSKFEEN----KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCF 289 (328)
Q Consensus 217 ~l~~lr~l~~~~~~v~-~--~~~~p~~gt~l~~~----~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L 289 (328)
||..||+||+.+.+|. + .+|.| .+||+... .+++..|+||++|+|||||||...+||++|+++|++..|++|
T Consensus 239 hL~~iR~lqd~tggf~efIp~~F~~-~nt~l~~~~~~~~~~~~~e~lk~~AvaRl~Ldn~i~~Iqa~Wv~~g~~~~q~aL 317 (375)
T PRK07360 239 HLSILREIQKETGGITEFIPLPFVH-ENAPLYERGRVKRGAPGLEDLKLYAVSRIFLGNWIKNIQPSWVKLGLKLAQEAL 317 (375)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH
T ss_conf 9999998887449846997114358-998500015678888669899999999998338887657777544899999999
Q ss_pred HHCCC---EEEECCEEECCCC------CCHHHHHHHHHHCCCCCCCC
Q ss_conf 80998---8997786651588------89899999999829853247
Q gi|254780485|r 290 FSGAN---SIFVGDTLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 290 ~~GaN---~~~~g~~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328)
.+||| |+|++|+++.++| .+.++++++|+++||+|+.+
T Consensus 318 ~~GanD~ggt~~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p~eR 364 (375)
T PRK07360 318 NCGANDLGGTLMEEHITKMAGASGGTCMSVEELENAIKSIGRIPKQR 364 (375)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHC
T ss_conf 66997676656667500122689988899999999999849983111
No 9
>PRK08445 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=472.41 Aligned_cols=306 Identities=14% Similarity=0.190 Sum_probs=259.0
Q ss_pred CCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4789999999973-99189999999998886289856999864530-786834232124335477756410006857999
Q gi|254780485|r 17 KVWTSKEVFQIYN-MPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVL 94 (328)
Q Consensus 17 e~ls~eea~~L~~-~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~ 94 (328)
||||.+|++.||+ .|+.+|+..|+.+|++.++++.|+|+.++|+| ||+|+.+|+||||++.++. +..+.++.|+|.
T Consensus 2 eRls~~e~~~L~~~~dl~~L~~~A~~~R~~~~g~~vvtfv~nrniN~TNiC~~~C~FCaF~r~~~~--~~aY~ls~eei~ 79 (348)
T PRK08445 2 KRLNKEEALDLIKNAPLKELGQMALARKQELHPEKITTFIVDRNINYTNICWVDCKFCAFYRHLKE--EDAYILSFEEID 79 (348)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCC--CCCCCCCHHHHH
T ss_conf 879999999986489999999999999999759935999701687552686548977757479999--876227999999
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-------------CCCHHHHHHHHCCCCCE
Q ss_conf 99999996498389973036888744289999988762136883241025-------------69999999874157606
Q gi|254780485|r 95 KEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-------------MLSFEQAQILSKAGLDY 161 (328)
Q Consensus 95 ~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-------------~~~~~~~~~Lk~aG~~~ 161 (328)
++++++.+.|++++|+|+|.++ ..+++||.++++.+|+..|.++++.+ ...++.+++||+||+++
T Consensus 80 ~~~~~a~~~g~tEv~i~GG~~P--~l~~~yY~~l~r~ik~~~P~i~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~s 157 (348)
T PRK08445 80 QKIEELLAIGGTQILFQGGVHP--KLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISLKEVLERLQAKGLSS 157 (348)
T ss_pred HHHHHHHHCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 9999998649818998279899--99777999999999975775424279999999999981989999999999819887
Q ss_pred E-EEECCC-CHHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECC-CEE
Q ss_conf 9-751343-77773205888-8989999999999987985577078668989999999999997408888602054-112
Q gi|254780485|r 162 Y-NHNIDT-SERFYPHVTTT-HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPIN-LLI 237 (328)
Q Consensus 162 ~-~~~let-~~~~~~~~~~~-~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~-~~~ 237 (328)
+ .-..|. +++...++||+ .+.++|+++++.||++|++++|||||||+||++||++||.+||+||+.+++|..+ ++.
T Consensus 158 lPGggAEIl~d~VR~~I~p~K~s~~~Wlei~~~AH~lGi~ttaTMlyGhiEt~e~rv~HL~~lR~lQdeTgGF~~FIpl~ 237 (348)
T PRK08445 158 IPGAGAEILSDRVRDIIAPKKLSSDRWLEVHRQAHKIGMKSTATMMFGTVENDEEIIEHWEHIRDLQDETGGFRAFILWS 237 (348)
T ss_pred CCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 88866263488999874888899999999999999869964121362677999999999999999998619978998543
Q ss_pred -ECCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCCC-
Q ss_conf -048741244----568798999999999999686872142311565165689999980998---89977866515888-
Q gi|254780485|r 238 -PIPGSKFEE----NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKNP- 308 (328)
Q Consensus 238 -p~~gt~l~~----~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g~- 308 (328)
.+.+|++.. ...+++.|+||++|||||||+| +.+||++|+++|.++.|++|.+||| |||++|+++.++|.
T Consensus 238 F~p~nt~l~~~~~~~~~~~~~e~Lk~~AvsRL~Ldn-i~~Iqa~Wv~~G~~~aq~aL~~GanD~gGT~~eE~I~~aAGa~ 316 (348)
T PRK08445 238 FQPDNTPLKEEHPEIKKQSSNRYLRLLAVSRLFLDN-FKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENVVKAAGAS 316 (348)
T ss_pred CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCEEHHHCCCC
T ss_conf 106997020037877899879999999999998648-8760621020578999999956997776551010112510899
Q ss_pred ---CHHHHHHHHHHCCCCCCCC
Q ss_conf ---9899999999829853247
Q gi|254780485|r 309 ---SYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 309 ---~~~~~~~~i~~~G~~P~~~ 327 (328)
+.+++++||+++|++|+.+
T Consensus 317 ~~~~~~~l~~lI~~aG~~P~eR 338 (348)
T PRK08445 317 FRMNQAEMIELIKDIGEVPAKR 338 (348)
T ss_pred CCCCHHHHHHHHHHCCCCEEEE
T ss_conf 8899999999999859986320
No 10
>PRK05926 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=469.91 Aligned_cols=317 Identities=16% Similarity=0.168 Sum_probs=262.4
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHH---C-CCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCC
Q ss_conf 5732134200234478999999997---3-99189999999998886289856999864530-78683423212433547
Q gi|254780485|r 4 STVVPEENPTKKPKVWTSKEVFQIY---N-MPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHN 78 (328)
Q Consensus 4 ~~~~~~~~~~~~~e~ls~eea~~L~---~-~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~ 78 (328)
..+-++.+|+.+++|||.+|+++|| + .++.+|+..|+.+|++ .+|+.|+|+.++|+| ||+|+.+|+||||++..
T Consensus 14 ~~l~~IleKv~~G~RLs~~dg~~L~~l~~~~dl~~lg~~Ad~~R~~-~~Gd~Vtfv~nr~INyTNvC~~~C~FCaF~r~~ 92 (371)
T PRK05926 14 SWLKTLFDKYLSGARLSEEDALQLLLLTDKEDQRALWSFADQVRKN-RVGDTVYYSSTLYLYPTNFCDFNCTFCSFYAKP 92 (371)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCC
T ss_conf 6899999999779999999999998348752599999999999997-569978996245865211342679247763689
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CC
Q ss_conf 77564100068579999999999649838997303688874428999998876213688324102-------------56
Q gi|254780485|r 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GM 145 (328)
Q Consensus 79 ~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~ 145 (328)
+ .+..|.++.||+++++++ .+.|++++|+|+|.+ +..+++||.++++.+|+..|.++++. |.
T Consensus 93 ~--~~~aY~ls~eei~~~v~e-~~~g~tEv~i~GG~h--P~l~~~yY~~l~~~ik~~~P~v~ihaft~~EI~~~a~~~~~ 167 (371)
T PRK05926 93 G--DPKGWFYTPDQLIQSIQE-IKSPITETHIVAGCF--PSCNLAYYEELFSKIKENFPDIHIKALTAIEYAYLSKLDNL 167 (371)
T ss_pred C--CCCCCCCCHHHHHHHHHH-HHCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 9--976523899999999999-875996899717889--89986999999999997589874144889999999998099
Q ss_pred CCHHHHHHHHCCCCCEE-EEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99999998741576069-751343-7777320588-88989999999999987985577078668989999999999997
Q gi|254780485|r 146 LSFEQAQILSKAGLDYY-NHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLA 222 (328)
Q Consensus 146 ~~~~~~~~Lk~aG~~~~-~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr 222 (328)
..++.+++||+||++++ .-.-|. +++...++|| |.+.++|+++++.||++|++++|||||||+||++||++||.+||
T Consensus 168 s~~EvL~~Lk~AGL~SlPGgGAEIl~d~VR~~I~p~K~~~~~Wlei~~~AH~lGi~t~ATMmyGHiEt~~~rv~HL~~lR 247 (371)
T PRK05926 168 PVREVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQDFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLR 247 (371)
T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999998387778887324347789997588989899999999999986997520465246699999999999999
Q ss_pred HCCCCCCEEE-CCCEE-ECCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC--
Q ss_conf 4088886020-54112-0487412445----68798999999999999686872142311565165689999980998--
Q gi|254780485|r 223 NLSTPPESIP-INLLI-PIPGSKFEEN----KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN-- 294 (328)
Q Consensus 223 ~l~~~~~~v~-~~~~~-p~~gt~l~~~----~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN-- 294 (328)
+||+.|.+|. +-+|. ...+|+|... ...+..+.+|++|||||||+| +.+||+||+++|.+++|++|.+|||
T Consensus 248 ~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~~~~~~~~~lk~iAvsRL~Ldn-i~hIqasWv~~G~~~aq~aL~~GAnDl 326 (371)
T PRK05926 248 DLQDETLGFKNFILLKFASENNALGKRLRKMGQRHSIPPASIIAVARLFLDN-FSNIKALWNYLGIEVALHLLSCGANDL 326 (371)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEHHHCCHHHHHHHHHCCCCCC
T ss_conf 9887529942997244247788220202688887740678999999997069-876785000025999999995699767
Q ss_pred -EEEECCEEECCCC------CCHHHHHHHHHHCCCCCCCC
Q ss_conf -8997786651588------89899999999829853247
Q gi|254780485|r 295 -SIFVGDTLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 295 -~~~~g~~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328)
|||++|+++.++| .+.++++++|+++|++|+.+
T Consensus 327 gGT~~eE~I~~aAGa~~~~~~~~~el~~lI~~aGr~P~~R 366 (371)
T PRK05926 327 SSTHMGEKVFQMASSKEPIKMDIEGMAALITQQGRIPCLT 366 (371)
T ss_pred CCCCCCCEEEHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 6553133464310279988789999999999849955605
No 11
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=0 Score=457.89 Aligned_cols=315 Identities=15% Similarity=0.156 Sum_probs=256.4
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCCHH--HHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3420023447899999999739918--9999999998886289856999864530-786834232124335477756410
Q gi|254780485|r 9 EENPTKKPKVWTSKEVFQIYNMPFN--DLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKAS 85 (328)
Q Consensus 9 ~~~~~~~~e~ls~eea~~L~~~~~~--el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~ 85 (328)
.......++.||.+|++.||++... +.+..+|+..|++.+|+.|||..|.||| ||+|..+|+||||++.... ...
T Consensus 481 l~~~~~~~~~L~e~ei~~Lf~Arg~d~~~v~~~AD~lR~~~~GD~VTyVvNRNINyTNVC~~~C~FCAF~r~~~~--~~a 558 (846)
T PRK09234 481 LRAAERDPAGLTDDEALALFTADGPALEAVCALADELRRDVVGDDVTYVVNRNINFTNICYTGCRFCAFAQRKGD--ADA 558 (846)
T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCC--CCC
T ss_conf 999750766689899999985678669999999999999871884799840676388775517973514478899--876
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CCCCHHHHH
Q ss_conf 0068579999999999649838997303688874428999998876213688324102-------------569999999
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GMLSFEQAQ 152 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~~~~~~~~ 152 (328)
|.++.|||.++++++.+.|++++|+|+|.+ +..+++||+++++.+|+..+.+|++. |...++.+.
T Consensus 559 Y~ls~eeI~~r~~EA~~~GaTEV~iqGGih--P~l~~~~Y~di~r~iK~~~P~ihihAFSp~EI~~~A~~~g~s~~E~L~ 636 (846)
T PRK09234 559 YSLSLDEVADRAWEAWVAGATEVCMQGGID--PELPGTGYADLVRAVKARVPSMHVHAFSPMEIANGATRSGLSIREWLT 636 (846)
T ss_pred EECCHHHHHHHHHHHHHCCCEEEEECCCCC--CCCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 118999999999999976987998347879--899878999999999986898704508999999999982999999999
Q ss_pred HHHCCCCCEE-EEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 8741576069-751343-7777320588-889899999999999879855770786689899999999999974088886
Q gi|254780485|r 153 ILSKAGLDYY-NHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPE 229 (328)
Q Consensus 153 ~Lk~aG~~~~-~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~ 229 (328)
+||+||++++ .-.-|. +++....+|| |.+.++|+++|+.||++|+++++||||||+|+.+||++||.+||+||+.|.
T Consensus 637 ~LkeAGL~SlPGggAEIL~d~VR~~Icp~K~~~~~Wlev~~~AH~lGl~TtATMmyGHvEt~e~rv~HL~~lR~lQdeTG 716 (846)
T PRK09234 637 ALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTG 716 (846)
T ss_pred HHHHCCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99980977799974132587999976888888999999999999859975212435677999999999999999998759
Q ss_pred EEECC-CEE-ECCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECC
Q ss_conf 02054-112-04874124----4568798999999999999686872142311565165689999980998---899778
Q gi|254780485|r 230 SIPIN-LLI-PIPGSKFE----ENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGD 300 (328)
Q Consensus 230 ~v~~~-~~~-p~~gt~l~----~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~ 300 (328)
+|.-+ +|. .+.+||+. ..+.++..|+++++||+||||-+.+.+||+||+++|.++.|++|.+||| |||++|
T Consensus 717 GFteFIPL~F~~~~tpl~~~g~~r~gpT~~e~l~~~AvsRL~L~dnI~nIQasWVklG~~~aq~aL~~GaNDlGGTlmeE 796 (846)
T PRK09234 717 GFTEFVPLPFVHQSAPLYLAGAARPGPTHRDNRAVHALARILLHGRIDNIQTSWVKLGVEGTRVMLRGGANDLGGTLMEE 796 (846)
T ss_pred CEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHCCHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 95599746756788803322688789988999999999999722688672615001679999999965997775561111
Q ss_pred EEECCCC------CCHHHHHHHHHHCCCCCCCC
Q ss_conf 6651588------89899999999829853247
Q gi|254780485|r 301 TLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 301 ~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328)
+++.++| .++++++++|+++|++|+.+
T Consensus 797 ~I~~aAGa~~g~~~t~~el~~lI~~aGr~P~qR 829 (846)
T PRK09234 797 TISRMAGSEHGSAKTVAELEAIAEGAGRPARQR 829 (846)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 331112689887799999999999859983025
No 12
>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function. .
Probab=100.00 E-value=0 Score=461.85 Aligned_cols=272 Identities=19% Similarity=0.333 Sum_probs=229.4
Q ss_pred EEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-----HHH
Q ss_conf 6999864530-7868342321243354777564100068579999999999649838997303688874428-----999
Q gi|254780485|r 52 IQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL-----SII 125 (328)
Q Consensus 52 V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~-----~~~ 125 (328)
|||..|.||| ||+|..+|+||||+++.+. +..|+||.|||+++++++.+.|++++|||+|.+|. .++ +||
T Consensus 1 VtfvVNRNINfTNIC~~~C~FCAF~~~~k~--~~~Y~Ls~eEI~~Kv~ea~~~G~tE~~iQGGlnP~--~~~nGssl~yy 76 (331)
T TIGR00423 1 VTFVVNRNINFTNICVGKCKFCAFRRREKD--KDAYVLSLEEILRKVKEAVAKGATEICIQGGLNPQ--LDINGSSLEYY 76 (331)
T ss_pred CEEECCCCCCCCHHHHHCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCCCCHHHHH
T ss_conf 935316656753002324796331134689--88814077999999999997198278852342788--76454149999
Q ss_pred HHHHHHHCCCCC---CEEEEC-------------CCCC-HHHHHHHHCCCCCEE-EEECCC-CHHHHHCCCC-CCCHHHH
Q ss_conf 998876213688---324102-------------5699-999998741576069-751343-7777320588-8898999
Q gi|254780485|r 126 VDMIKGVKSLGL---ETCMTL-------------GMLS-FEQAQILSKAGLDYY-NHNIDT-SERFYPHVTT-THTFEDR 185 (328)
Q Consensus 126 ~e~i~~i~~~~~---~i~~~~-------------g~~~-~~~~~~Lk~aG~~~~-~~~let-~~~~~~~~~~-~~~~~~~ 185 (328)
+++++.||...+ .||++. +..- +|.+++||++|++++ .-.-|. +.+.++++|| |.+.++|
T Consensus 77 ~~l~~~Ik~~~pPyG~~hiHafSp~Ev~f~A~~~~~~~e~EvL~~LK~aGL~SmPGtgAEILdD~vRr~IcP~K~~s~eW 156 (331)
T TIGR00423 77 EELFRAIKQEFPPYGDVHIHAFSPMEVYFLAKNEGLSIEKEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEW 156 (331)
T ss_pred HHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCCCCCHHHH
T ss_conf 99999997417896524761468689999998618978899999988850356777622653033587547798872789
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC------CCCCCEEE--CCCEEECCCCC--CCC--CCCCCHH
Q ss_conf 999999998798557707866898999999999999740------88886020--54112048741--244--5687989
Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL------STPPESIP--INLLIPIPGSK--FEE--NKKVDPI 253 (328)
Q Consensus 186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l------~~~~~~v~--~~~~~p~~gt~--l~~--~~~~~~~ 253 (328)
|++|+.||++|++|||||||||+|+++|||+||.+||++ |..|.+|. +|.....++|| +.. .+.+|+.
T Consensus 157 lev~~~AH~~GiptTATMMfGHve~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL~F~~~n~P~~~~~~~~~~~s~~ 236 (331)
T TIGR00423 157 LEVIKTAHRLGIPTTATMMFGHVEEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPLPFQPENAPIYLEGEVRKGASGI 236 (331)
T ss_pred HHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99999998666962101123552767889999999987517002335227732101467788877711140023788868
Q ss_pred HHHHHHHHHHHHCC-CCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCCC------CHHHHHHHHHHCCCC
Q ss_conf 99999999999686-872142311565165689999980998---89977866515888------989999999982985
Q gi|254780485|r 254 EHVRIISVARILMP-KSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKNP------SYNKDTILFNRLGLI 323 (328)
Q Consensus 254 e~lr~iAi~RL~lP-~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g~------~~~~~~~~i~~~G~~ 323 (328)
++||++|||||+|. +.+-+||+||+++|.++.|+||.+||| |||++|++++++|+ ++++++++|+++|+.
T Consensus 237 ~~Lk~~AiSRI~L~gk~I~NIqASWV~lG~~~a~vAL~~GANDlGGTl~EE~i~~aAGA~~~~~~~~E~l~~~ik~~G~~ 316 (331)
T TIGR00423 237 DDLKVIAISRILLNGKNIKNIQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKTGVGLEVEELIELIKDAGRV 316 (331)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99999999998828841223250688854789999998177436875786532110278888867889999999984885
Q ss_pred CCCC
Q ss_conf 3247
Q gi|254780485|r 324 PDLS 327 (328)
Q Consensus 324 P~~~ 327 (328)
|+.+
T Consensus 317 ~~~R 320 (331)
T TIGR00423 317 PAQR 320 (331)
T ss_pred CCCC
T ss_conf 3101
No 13
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=100.00 E-value=0 Score=453.76 Aligned_cols=303 Identities=17% Similarity=0.273 Sum_probs=255.3
Q ss_pred CCHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 899999999739--9189999999998886289856999864530-7868342321243354777564100068579999
Q gi|254780485|r 19 WTSKEVFQIYNM--PFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLK 95 (328)
Q Consensus 19 ls~eea~~L~~~--~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~ 95 (328)
||++||+.||+. |+.+|+..|+.+|+ +.+|++|+|+.++|+| ||+|+++|+||+|++.++ . ...+.+++|||++
T Consensus 1 ls~eeal~L~~~~~dl~~L~~~A~~vR~-~~~G~~Vtf~~n~~In~TNiC~~~C~fCaF~r~p~-~-~~ay~lt~eei~~ 77 (343)
T TIGR03551 1 ITKEEALELFEARGNLFELFRLADELRR-DIVGDTVTYVVNRNINFTNVCYGGCGFCAFRKRKG-D-ADAYLLSLEEIAE 77 (343)
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCC-C-CCCCCCCHHHHHH
T ss_conf 9889999997159999999999999999-87799489965006255268747897677866899-9-8660079999999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE-------------CCCCCHHHHHHHHCCCCCEE
Q ss_conf 99999964983899730368887442899999887621368832410-------------25699999998741576069
Q gi|254780485|r 96 EAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMT-------------LGMLSFEQAQILSKAGLDYY 162 (328)
Q Consensus 96 ~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~-------------~g~~~~~~~~~Lk~aG~~~~ 162 (328)
.++++.+.|++++++++|.+ +...++||.++++.+|+..+.++++ .|.+.++.+++|++||++++
T Consensus 78 ~~~~a~~~G~~Ei~~~gG~~--Pel~~~~y~e~~r~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~ 155 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGIH--PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSM 155 (343)
T ss_pred HHHHHHHCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999976996899825868--7888889999999998748830102278999999998659999999999997587767
Q ss_pred E-EECCC-CHHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-C--CCE
Q ss_conf 7-51343-77773205888-89899999999999879855770786689899999999999974088886020-5--411
Q gi|254780485|r 163 N-HNIDT-SERFYPHVTTT-HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-I--NLL 236 (328)
Q Consensus 163 ~-~~let-~~~~~~~~~~~-~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~--~~~ 236 (328)
. ...|. +++.++.+||+ .+.++|+++++.||++|+++|||||||||||++||++||..||++|+.+.+|. + .+|
T Consensus 156 pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~lGi~ttatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f 235 (343)
T TIGR03551 156 PGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPF 235 (343)
T ss_pred CCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88651321401241469698999999999999998599720223427889999999999999986201388269981365
Q ss_pred EECCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCC--
Q ss_conf 2048741244----568798999999999999686872142311565165689999980998---8997786651588--
Q gi|254780485|r 237 IPIPGSKFEE----NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKN-- 307 (328)
Q Consensus 237 ~p~~gt~l~~----~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g-- 307 (328)
. .++||+.. .+.+++.|+||++|+|||+||+.+.+||++|+++|++..|++|.+||| |||++|+++.++|
T Consensus 236 ~-p~~t~l~~~~~~~~~~~~~e~l~~iAvaRl~l~~~i~~Iqa~w~~lg~~~~q~~L~~GanD~gGt~~~e~i~~~ag~~ 314 (343)
T TIGR03551 236 V-HYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGAS 314 (343)
T ss_pred C-CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 6-678804441566789857999999999999704776542226625598999999957984676666777563621579
Q ss_pred ----CCHHHHHHHHHHCCCCCCCC
Q ss_conf ----89899999999829853247
Q gi|254780485|r 308 ----PSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 308 ----~~~~~~~~~i~~~G~~P~~~ 327 (328)
.+.++..++|+++|++|+.+
T Consensus 315 ~~~~~~~~~l~~~i~~aG~~p~eR 338 (343)
T TIGR03551 315 HGEYLSPEELEAIIEDAGRIPKQR 338 (343)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 988899999999999859980125
No 14
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=0 Score=419.07 Aligned_cols=321 Identities=19% Similarity=0.200 Sum_probs=267.4
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCC
Q ss_conf 855732134200234478999999997399-189999999998886289856999864530-786834232124335477
Q gi|254780485|r 2 SRSTVVPEENPTKKPKVWTSKEVFQIYNMP-FNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNK 79 (328)
Q Consensus 2 ~~~~~~~~~~~~~~~e~ls~eea~~L~~~~-~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~ 79 (328)
.+. +-+..+++..+++||.+|++.||+.. ..+|...|+..++++..|+.|+|..++|+| ||+|.++|.||+|+++++
T Consensus 5 ~~~-~~~~~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~~ 83 (370)
T COG1060 5 ARD-VDEIVEKALNGERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKPG 83 (370)
T ss_pred HHH-HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCC
T ss_conf 667-8999998752577898999988545868999999999887423688579997525785323317997262345788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CCC
Q ss_conf 7564100068579999999999649838997303688874428999998876213688324102-------------569
Q gi|254780485|r 80 SKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GML 146 (328)
Q Consensus 80 ~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~~ 146 (328)
. ++.+++++|||.++++++++.|++++++|+|.++ ...++||.++++.||+..+.+|++. +..
T Consensus 84 ~--~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p--~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s 159 (370)
T COG1060 84 D--PKAYTLSPEEILEEVREAVKRGITEVLIVGGEHP--ELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLS 159 (370)
T ss_pred C--CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCCC
T ss_conf 8--6553169999999999998759869998057687--74367999999999885730343016788867987436888
Q ss_pred CHHHHHHHHCCCCCEEEEECCC-C-HHHHHC-CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999998741576069751343-7-777320-588889899999999999879855770786689899999999999974
Q gi|254780485|r 147 SFEQAQILSKAGLDYYNHNIDT-S-ERFYPH-VTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLAN 223 (328)
Q Consensus 147 ~~~~~~~Lk~aG~~~~~~~let-~-~~~~~~-~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~ 223 (328)
.+|.|++||+||+|.+-....+ . ++.... .++|.++++||++++.||++||++++||||||+|+++||++||.+||+
T Consensus 160 ~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir~ 239 (370)
T COG1060 160 YEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRD 239 (370)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 99999999976987674754114167799863798899999999999999769984203478732888999999999999
Q ss_pred CCCCCCE---EECCCEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EE
Q ss_conf 0888860---205411204874-1244568798999999999999686872142311565165689999980998---89
Q gi|254780485|r 224 LSTPPES---IPINLLIPIPGS-KFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SI 296 (328)
Q Consensus 224 l~~~~~~---v~~~~~~p~~gt-~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~ 296 (328)
||+.+.+ |...+|.|.+++ ++...+.+++.++++++|+|||+|++..-+++++|.+.|....+.+|.+||| |+
T Consensus 240 lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt 319 (370)
T COG1060 240 LQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGT 319 (370)
T ss_pred HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 99985895799805545788876666789899899999999999970676542417441036699999998286167677
Q ss_pred EECCEEECCCC------CCHHHHHHHHHHCCCCCCCC
Q ss_conf 97786651588------89899999999829853247
Q gi|254780485|r 297 FVGDTLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 297 ~~g~~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328)
+.+|++....| ++++++.++|+++|++|+++
T Consensus 320 ~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~p~~R 356 (370)
T COG1060 320 GYEEKVNPAAGAFSGDWRSVEELAALIKEAGRIPVER 356 (370)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 7553436555555678999999999999849970221
No 15
>KOG2900 consensus
Probab=100.00 E-value=0 Score=416.84 Aligned_cols=310 Identities=51% Similarity=0.874 Sum_probs=298.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 78999999997399189999999998886289856999864530786834232124335477756410006857999999
Q gi|254780485|r 18 VWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEA 97 (328)
Q Consensus 18 ~ls~eea~~L~~~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a 97 (328)
.||++|+..+|+.|+.||.+.|+.+.|+-+...+|..|..++|+|+.|.++|+||+||.++.++.+..+++..|+++++|
T Consensus 47 ~Wtr~eik~iYdtPLldL~f~aa~~HRk~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~A 126 (380)
T KOG2900 47 SWTRSEIKEIYDTPLLDLTFAAALQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEA 126 (380)
T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 44499999873455899999999877630782130145788750588651221101003465440278774099999999
Q ss_pred HHHHHCCCEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHC
Q ss_conf 9999649838997303688874--42899999887621368832410256999999987415760697513437777320
Q gi|254780485|r 98 KNAKENGATRYCMGAAWREPKE--RDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPH 175 (328)
Q Consensus 98 ~~~~~~G~~~~~l~~~~~~~~~--~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~ 175 (328)
++++..|-++||++..|++... ..+..++|+|+.++..++++|+.+|.+++++.+.||+||+..|++|+||++++|++
T Consensus 127 k~AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYsk 206 (380)
T KOG2900 127 KEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSK 206 (380)
T ss_pred HHHHHCCCCEEECCHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEECCCCCCCHHHHHCC
T ss_conf 99886388614311565531141458999999999987288100443144138889988854643003676424666400
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC--CCCCCHH
Q ss_conf 58888989999999999987985577078668989999999999997408888602054112048741244--5687989
Q gi|254780485|r 176 VTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE--NKKVDPI 253 (328)
Q Consensus 176 ~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~--~~~~~~~ 253 (328)
+.++.+|++||++++..+++|+++|+|.|+|+||..+||+..+..|..+..+|++||+|.+++++|||+++ ..+...+
T Consensus 207 vItTRtYDdRL~Ti~nvr~aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~ 286 (380)
T KOG2900 207 VITTRTYDDRLQTIKNVREAGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQID 286 (380)
T ss_pred CCEECCHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHH
T ss_conf 12302267788888889872633314653204665556034443101489997666511477438864203213666388
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999686872142311565165689999980998899778665158889899999999829853247
Q gi|254780485|r 254 EHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 254 e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328)
|+||+||.+||+||++.|++++||.++...-|-+++.+|||+|++|++++|+.+.+.++|..|....|++|-.+
T Consensus 287 e~lR~IaTARIvMPKaiiRlaAGR~t~sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~~ 360 (380)
T KOG2900 287 EILRTIATARIVMPKAIIRLAAGRYTMSESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPMEA 360 (380)
T ss_pred HHHHHHHHHHEECHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEECHHHHCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 99998756331153889988515550031588899980775112041343477788444789999808876764
No 16
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=100.00 E-value=0 Score=383.21 Aligned_cols=266 Identities=20% Similarity=0.284 Sum_probs=213.7
Q ss_pred EEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 999864530-7868342321243354777564100068579999999999649838997303688874428999998876
Q gi|254780485|r 53 QLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKG 131 (328)
Q Consensus 53 ~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~ 131 (328)
||+.|+|+| ||+|+.+|+||||++.++. ...++++.|||++.++++.+.|++++|+|+|.++. ..++++.+.++.
T Consensus 1 Ty~~N~~In~TNiC~~~C~FCaF~r~~~~--~~ay~ls~eei~~~~~ea~~~G~tEv~i~gG~~P~--~~~~~~~~~l~~ 76 (322)
T TIGR03550 1 TYSRNVFIPLTRLCRNRCGYCTFRRPPGE--LEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPE--ERYPEAREWLAE 76 (322)
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHH--HHHHHHHHHHHH
T ss_conf 99872156887203176967885168999--88774799999999999997798799964886800--349999999998
Q ss_pred H-----------------CCCCCCEEEECCCCCHHHHHHHHC--CCCCEEEEECCC-CHH----HHHCCCCCCCHHHHHH
Q ss_conf 2-----------------136883241025699999998741--576069751343-777----7320588889899999
Q gi|254780485|r 132 V-----------------KSLGLETCMTLGMLSFEQAQILSK--AGLDYYNHNIDT-SER----FYPHVTTTHTFEDRLQ 187 (328)
Q Consensus 132 i-----------------~~~~~~i~~~~g~~~~~~~~~Lk~--aG~~~~~~~let-~~~----~~~~~~~~~~~~~~l~ 187 (328)
+ .+.+...+++.|.++.+++++|++ +|++. .+|+ ++. ....+||++.+++||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~aglg~---~~e~~ae~l~~~vr~~~~P~K~~~~~l~ 153 (322)
T TIGR03550 77 MGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGL---MLETTSERLCKGEAHYGSPGKDPAVRLE 153 (322)
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHH---HHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 4886178999999999998633565447676889999987631862666---7888887532223567799988799999
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999987985577078668989999999999997408888602---054112048741244568798999999999999
Q gi|254780485|r 188 TLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIPGSKFEENKKVDPIEHVRIISVARI 264 (328)
Q Consensus 188 ~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL 264 (328)
+++.||++|+++++||||||+||.+||++||..||+||+.|++| ...+|.|.++|++...+.++..|+||++|+|||
T Consensus 154 i~~~Ah~lGi~ttaTml~GhiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~~~~s~~e~Lr~iAvaRl 233 (322)
T TIGR03550 154 TIEDAGRLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARL 233 (322)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999985996151234204699999999999999878652965799626766899864556999899999999999999
Q ss_pred HCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EE--EECCEEECCC-CCCHHHHHHHHHHCCCCCCCC
Q ss_conf 686872142311565165689999980998---89--9778665158-889899999999829853247
Q gi|254780485|r 265 LMPKSRLRLAAGRAMMSDELQALCFFSGAN---SI--FVGDTLLTAK-NPSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 265 ~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~--~~g~~~~t~~-g~~~~~~~~~i~~~G~~P~~~ 327 (328)
+|||. ++||++ +++|.+..|++|.+||| || ++.+++...+ -++++++.++|+++||+|+.+
T Consensus 234 ~Ldn~-~~Iqa~-~~lg~~~~q~aL~~GanDlGG~~~~~~~~v~~~~~~~~~~el~~~i~~aG~~p~eR 300 (322)
T TIGR03550 234 ILPPD-ISIQVP-PNLNREDYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAGFTLKER 300 (322)
T ss_pred HCCCC-CEEEEC-CCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 75999-728608-85675899999967997788877142754488899999999999999849986652
No 17
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=100.00 E-value=0 Score=366.60 Aligned_cols=272 Identities=22% Similarity=0.300 Sum_probs=221.3
Q ss_pred HCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 6289856999864530-786834232124335477756410006857999999999964983899730368887442899
Q gi|254780485|r 46 NFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328)
Q Consensus 46 ~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328)
..+|+.|||+.++|+| ||+|+++|+||+|++..+ . .++++.|||++.++++++.|++++|+++|.+++. .+++
T Consensus 2 ~~~G~~VTy~~n~~In~TNiC~~~C~fCaF~~~~~---~-a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~--~~~~ 75 (336)
T PRK06245 2 VNMSKIVTYSRNVFIPLTYECRNRCGYCTFRPDPG---E-ASLLSPEEVREILERGQDAGCTEALFTFGEVPDE--SEEI 75 (336)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---C-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--CHHH
T ss_conf 98898789818626167754026882586746887---5-6877999999999999976983999805788663--6899
Q ss_pred HH---------------HHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCC---CCCCCHHHH
Q ss_conf 99---------------988762136883241025699999998741576069751343-77773205---888898999
Q gi|254780485|r 125 IV---------------DMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHV---TTTHTFEDR 185 (328)
Q Consensus 125 ~~---------------e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~---~~~~~~~~~ 185 (328)
+. ++.+...+.+...|.++|.++.+++++||+.++ +....+|+ ++.+...+ +|++..++|
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~a-smG~mlE~~se~l~~~~h~~~P~K~~~~r 154 (336)
T PRK06245 76 REQLAEPGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNA-SMGLMLEQTSPRLLETVHRHSPGKDPELR 154 (336)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999707550778899985888763655223667678999998753597-66757123568988763044898788999
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999987985577078668989999999999997408888602---0541120487412445687989999999999
Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIPGSKFEENKKVDPIEHVRIISVA 262 (328)
Q Consensus 186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~ 262 (328)
|+++++||++|+++|+|||||||||++||++||..||+||+.+++| .+.+|.|.++|+|.+.+.++..|++|++|+|
T Consensus 155 L~~ie~Ah~lgIptTatmL~G~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~~~~~~~e~l~~iAvA 234 (336)
T PRK06245 155 LETIEWAGELKIPFTTGLLIGIGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENHPEPSPEEMPRVVALA 234 (336)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999839972202452066999999999999999886349757995068778987533469997999999999999
Q ss_pred HHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEE--ECCEEE-CCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99686872142311565165689999980998---899--778665-15888989999999982985324
Q gi|254780485|r 263 RILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIF--VGDTLL-TAKNPSYNKDTILFNRLGLIPDL 326 (328)
Q Consensus 263 RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~--~g~~~~-t~~g~~~~~~~~~i~~~G~~P~~ 326 (328)
||+||+. |+||++ ++++++..|++|.+||| ||. +-+++- ...=+..++..+.++++|+..+-
T Consensus 235 RiiL~~~-i~IQap-pnL~~~~~~~~L~~GanDlGGisp~t~d~vnpe~~wp~~~~l~~~~~~~g~~l~~ 302 (336)
T PRK06245 235 RLILPPD-ISIQVP-PNLVDDTGLLFLEAGADDLGGISPVTKDEVNPEYPWPDIDELKEILEEAGWQLKE 302 (336)
T ss_pred HHHCCCC-CEEEEC-CCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 9966998-579769-8678557899986787667887757666018899998999999999975996564
No 18
>PRK06267 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=358.25 Aligned_cols=253 Identities=19% Similarity=0.249 Sum_probs=215.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCC--CCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 918999999999888628985699986453078683--423212433547775-64100068579999999999649838
Q gi|254780485|r 31 PFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCP--ENCGYCNQSVHNKSK-LKASKLINVDQVLKEAKNAKENGATR 107 (328)
Q Consensus 31 ~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~--~~C~fCaf~~~~~~~-~~~~~~~~~Eei~~~a~~~~~~G~~~ 107 (328)
+.+|++-+|..++++ ++||.|++.+.|.+ ||+|. ++|.||+||++++.. ....+.+++|+|++.|+.+++.|.+.
T Consensus 5 ~~~~~~~kAnki~~K-~~Gd~V~LrglIef-sN~C~~~~dC~YCg~sa~~~k~k~p~ryR~s~EeIl~~A~~~~~~G~kt 82 (324)
T PRK06267 5 EILENSIKAFKLTEK-HHGNIVSLERALFL-GWYCNLGDPCKFCFMSTQKDKIKDPLKARRRPESILAEAIIMKRIGWKL 82 (324)
T ss_pred HHHHHHHHHHHHHHH-HCCCEEEEEEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCE
T ss_conf 999999999999998-35985889788888-2535899998768777777777646655289999999999999839997
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHH
Q ss_conf 9973036888744289999988762136-883241025699999998741576069751343-77773205888898999
Q gi|254780485|r 108 YCMGAAWREPKERDLSIIVDMIKGVKSL-GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDR 185 (328)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~ 185 (328)
+++|+|. +.. .+++.++++.|++. +..+++|+|..+++++..++++|++.+ +|| .+++|+++||++++++|
T Consensus 83 ~vLqsGe-dyt---~eel~~ii~~IK~i~~~avtLSlG~~s~e~~~~~~~aG~~~~---lETan~~ly~~i~p~~s~e~R 155 (324)
T PRK06267 83 EFISGGY-GYT---TEEINDIIEMISYIQGSKQYLNVGIIDFENLNLNEIEGVVGA---VETVNPKLHEELCPGKPLDKI 155 (324)
T ss_pred EEEECCC-CCC---HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHH---HHCCCHHHHCCCCCCCCHHHH
T ss_conf 9980487-799---899999999998601871697158787999977766370142---414798887027999988999
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999879855770786689899999999999974088886020541120487412445687989999999999996
Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARIL 265 (328)
Q Consensus 186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~ 265 (328)
+++++.++++|+++|+|+|+|+|||.+|++++++.|++|+. ++||+++|+|+|||||++.|++++.|++|+||+.||+
T Consensus 156 i~~l~~lk~~G~e~gsG~ivGlGET~ed~~~~~~~lkel~~--d~I~I~~f~P~~gTP~en~p~~t~~e~lk~iA~~RL~ 233 (324)
T PRK06267 156 KEMLKKAKDLGLKTGITIILGLGETEDDIELLLNLIEELNL--DRITFYSLNPQKETIFEGKPSPTTLEYMNWVSSVRLN 233 (324)
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999839832004687379889999999999997699--9763258458999988999998999999999999996
Q ss_pred CCCCCCEEEEHHHHHCHHHHHHHHHHCCCEE
Q ss_conf 8687214231156516568999998099889
Q gi|254780485|r 266 MPKSRLRLAAGRAMMSDELQALCFFSGANSI 296 (328)
Q Consensus 266 lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~ 296 (328)
+|++.|+.++ |.. +.+.-...|+||||++
T Consensus 234 ~Pki~I~~~t-~~~-~~~ni~~ll~aGan~i 262 (324)
T PRK06267 234 FPKIKIITGT-WVD-KLTNIGPLVMAGSNVI 262 (324)
T ss_pred CCCCCCCCCC-CCC-CCCCCCHHHHCCCCCC
T ss_conf 8871253576-535-7110018776477630
No 19
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=0 Score=351.06 Aligned_cols=309 Identities=20% Similarity=0.286 Sum_probs=264.8
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCC---HHHHHH-HHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 34200234478999999997399---189999-99999888628985699986453078683423212433547775641
Q gi|254780485|r 9 EENPTKKPKVWTSKEVFQIYNMP---FNDLLF-WSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKA 84 (328)
Q Consensus 9 ~~~~~~~~e~ls~eea~~L~~~~---~~el~~-~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~ 84 (328)
+.++...-++||.+|.+.|++-. .+|.++ .|+++ +++++||+|.++.++++ ||+|.|+|.||+|++.|+ +.+
T Consensus 26 dV~~aL~k~~l~~~d~~~LLsp~a~~~lE~ma~~A~~l-t~~~fG~~I~LfaPLYl-SN~C~N~C~YCGf~~~N~--i~R 101 (371)
T PRK09240 26 DVERALNKDKLDLEDLMALLSPAAEPYLEEMAQRAQAL-TRQRFGNTISLYTPLYL-SNLCANDCTYCGFSMSNK--IKR 101 (371)
T ss_pred HHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHCCCEEEEEECHHH-HCCCCCCCEECCCCCCCC--CCC
T ss_conf 99999715799989999886974788999999999999-99873985899850440-222177887589867787--630
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE
Q ss_conf 00068579999999999649838997303688874428999998876213688324102569999999874157606975
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNH 164 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~ 164 (328)
+ .++.|||.++++.+.++|++++.+++|. ++...+++|+.++++.+++.+..|.+++++++.++|++|+++|+|+|.+
T Consensus 102 ~-~Ls~eEI~~E~~ai~~~G~k~ILLvtGE-~~~~~~~~Yi~~~v~~ik~~f~~v~iev~Pl~~eeY~~L~~aG~d~~~v 179 (371)
T PRK09240 102 K-TLDEEEIEREMAAIKKLGFEHILLVTGE-HEAKVGVDYIRRALPLAREYFSSVAIEVQPLSEEEYAELVELGLDGVTV 179 (371)
T ss_pred C-CCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 0-2899999999999997695238854057-8776988999999999997567407995259989999999859986999
Q ss_pred ECCC-CHHHHHCCC---CCCCHHHHHHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHHHCCCC----CCEEECCC
Q ss_conf 1343-777732058---88898999999999998798-557707866898999999999999740888----86020541
Q gi|254780485|r 165 NIDT-SERFYPHVT---TTHTFEDRLQTLENVRKSGI-KVCCGGILGLGEMIDDRIDMLLTLANLSTP----PESIPINL 235 (328)
Q Consensus 165 ~let-~~~~~~~~~---~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~gEt~eeri~~l~~lr~l~~~----~~~v~~~~ 235 (328)
++|| .++.|+++| +|.+|++||+++++|.++|+ .++.|.|+|+.++..|.+..+.|+..||.+ +.+|++|+
T Consensus 180 yQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~dwr~e~~~~~~Ha~~L~~~y~~~~~siS~PR 259 (371)
T PRK09240 180 YQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWRARYSISFPR 259 (371)
T ss_pred EEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 60325999999858899854525452378889875997036110226546899999999999999987799875763575
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE--------------
Q ss_conf 120487412445687989999999999996868721423115651656899999809988997786--------------
Q gi|254780485|r 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT-------------- 301 (328)
Q Consensus 236 ~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~-------------- 301 (328)
+.|..|. +.+..+.++.+++|+||+.||++|++.|.+|+ || .++++...+..|+..+.+|..
T Consensus 260 lrP~~g~-~~p~~~vsD~~l~q~i~a~Rl~~P~~gi~lST-RE--~~~~Rd~li~lGvT~mSAgs~T~~GGy~~~~~~~~ 335 (371)
T PRK09240 260 LRPCTGG-FEPKSIVSDRQLVQLICAFRLFLPDVEISLST-RE--SPEFRDNLIPLGITKMSAGSSTQPGGYADPEKELE 335 (371)
T ss_pred CCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEC-CC--CHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 3368899-88986578899999999999866555616864-78--98999888852560255555468877789998866
Q ss_pred -EECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf -65158889899999999829853247
Q gi|254780485|r 302 -LLTAKNPSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 302 -~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328)
+..++.+|++|+.++|++.|+.|++.
T Consensus 336 QF~i~D~Rs~~Ev~~~l~~~Gy~Pv~k 362 (371)
T PRK09240 336 QFEISDDRSVEEVAAALRAQGLQPVWK 362 (371)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEECCC
T ss_conf 653799989999999999879910316
No 20
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis. They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process.
Probab=100.00 E-value=0 Score=355.36 Aligned_cols=309 Identities=24% Similarity=0.313 Sum_probs=272.2
Q ss_pred HHHCCCCCCCCHHHHHHHHC---CCHH-HHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42002344789999999973---9918-9999999998886289856999864530786834232124335477756410
Q gi|254780485|r 10 ENPTKKPKVWTSKEVFQIYN---MPFN-DLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKAS 85 (328)
Q Consensus 10 ~~~~~~~e~ls~eea~~L~~---~~~~-el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~ 85 (328)
.+-+.++|.++.+|+++|++ .|.+ ++...|+.+.+++| ||.|.++.++++ ||+|.|.|.||||+.+|| +.+
T Consensus 28 eraL~~~e~~~~~D~~aLlSPaA~~YLE~mA~~a~~lt~~rF-G~ti~Lf~PLYl-SN~C~N~C~YCGF~~~NK--IkR- 102 (378)
T TIGR02351 28 ERALNKREHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRF-GNTISLFTPLYL-SNYCSNKCVYCGFSMSNK--IKR- 102 (378)
T ss_pred HHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEHHHHHH-HHCCCCCCCCCCCCCCCC--HHH-
T ss_conf 997245767898888631143010689999999998738763-781000133456-541487521046578673--020-
Q ss_pred CCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE
Q ss_conf 0068579999999999649-838997303688874428999998876213688324102569999999874157606975
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNH 164 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~ 164 (328)
..|+.|||.++.+++.+.| +.+++|++|.++. ...++|+.++++.+|+.+..|.+.+.|+++|+|++|+++|+|.+.+
T Consensus 103 ~~Ln~~Ei~~E~~aI~k~gPf~~iLlvtGE~e~-~~g~~Yi~~~~~l~k~~F~~l~iEv~Pl~~eeYk~L~~~Gld~V~V 181 (378)
T TIGR02351 103 KKLNEEEIEREIEAIKKSGPFKEILLVTGESEK-AAGVEYIEEAIKLAKEYFSSLAIEVQPLTEEEYKKLKEAGLDGVTV 181 (378)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHEEEECCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEE
T ss_conf 048888999999998620770130011157775-5883789999999875278544887307704568897708881588
Q ss_pred ECCC-CHHHHHCCCC---CCCHHHHHHHHHHHHHCCC-CCCCEEEECCCC-CHHHHHHHHHHHHHCCCCC----CEEECC
Q ss_conf 1343-7777320588---8898999999999998798-557707866898-9999999999997408888----602054
Q gi|254780485|r 165 NIDT-SERFYPHVTT---THTFEDRLQTLENVRKSGI-KVCCGGILGLGE-MIDDRIDMLLTLANLSTPP----ESIPIN 234 (328)
Q Consensus 165 ~let-~~~~~~~~~~---~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~gE-t~eeri~~l~~lr~l~~~~----~~v~~~ 234 (328)
++|| .+..|+++|+ |.+|.+||++.+++-++|| +++-|+|+|+-| ++-|-+-...|++-||.++ -|+++|
T Consensus 182 yQETYn~~~Y~~~H~~G~K~~F~yRl~tpeR~a~AG~~kIg~GaLlGL~dnwR~Da~~~a~H~~YL~~~Yw~~~~SiS~P 261 (378)
T TIGR02351 182 YQETYNEKKYKKHHLAGKKKDFRYRLETPERIAKAGMRKIGIGALLGLEDNWRTDAFFTAYHLRYLQKKYWKTKYSISVP 261 (378)
T ss_pred EEECCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 76516742154437666877644105604678661874021253430122422899999999999986368330303254
Q ss_pred CEEECCCC----CCCCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEE------CCEE-
Q ss_conf 11204874----124456-87989999999999996868721423115651656899999809988997------7866-
Q gi|254780485|r 235 LLIPIPGS----KFEENK-KVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFV------GDTL- 302 (328)
Q Consensus 235 ~~~p~~gt----~l~~~~-~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~------g~~~- 302 (328)
+++|..|. -++... .+++.+.+++++++||++|++.|.||| || ++++|...+.-|++.+.+ |+|-
T Consensus 262 RLRP~~n~aPasG~~p~~~~~~d~~LvQ~~cAyRLF~p~~~IslST-RE--~~~FRDn~~pLGiT~~SAGssT~pGGy~e 338 (378)
T TIGR02351 262 RLRPCTNDAPASGLKPKVKIVTDRELVQLICAYRLFDPDVEISLST-RE--SKKFRDNVIPLGITKMSAGSSTEPGGYSE 338 (378)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CC--CHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 3367668976467856665257678899999998734104744020-25--65456643366322011220158866203
Q ss_pred -ECCC---------CCCHHHHHHHHHHCCCCCCCC
Q ss_conf -5158---------889899999999829853247
Q gi|254780485|r 303 -LTAK---------NPSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 303 -~t~~---------g~~~~~~~~~i~~~G~~P~~~ 327 (328)
++.. .+|+.|+.++||+.|+.|++.
T Consensus 339 C~~~~~leQFeI~D~Rsv~Ev~~~lr~~G~~PVwk 373 (378)
T TIGR02351 339 CSEKKGLEQFEISDERSVAEVEEDLRKKGLQPVWK 373 (378)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 78888875101246788889999998628896000
No 21
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=0 Score=343.48 Aligned_cols=317 Identities=22% Similarity=0.329 Sum_probs=271.0
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 557321342002344789999999973991899---99999998886289856999864530786834232124335477
Q gi|254780485|r 3 RSTVVPEENPTKKPKVWTSKEVFQIYNMPFNDL---LFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNK 79 (328)
Q Consensus 3 ~~~~~~~~~~~~~~e~ls~eea~~L~~~~~~el---~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~ 79 (328)
+..|-.+-.|...-++||.+|+..|++.+++++ ++.+|...+++++||++.++.++++ ||.|+|+|.||+|+++|+
T Consensus 30 ~~~v~~il~Ka~~~~gL~~~e~A~LL~~~d~e~~eem~~~A~~ik~~~yGnrIvLFAPLYl-SN~C~N~C~YCGF~~~Nk 108 (471)
T PRK09613 30 KEEIREIIEKALEKEGLSPEETAVLLNVEDEELLEEIFKAAREIKEKIYGNRIVLFAPLYI-SNYCVNNCVYCGFRRSNK 108 (471)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HCCCCCCCEECCCCCCCC
T ss_conf 8999999999986289999999999558998999999999999999861875899854112-033367875378747787
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC------EEEECCCCCHHHHHH
Q ss_conf 75641000685799999999996498389973036888744289999988762136883------241025699999998
Q gi|254780485|r 80 SKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE------TCMTLGMLSFEQAQI 153 (328)
Q Consensus 80 ~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~------i~~~~g~~~~~~~~~ 153 (328)
. +.+ ..|+.|||.++++.+.++|.+++.+++|. .|...+++|+.++++.++..... |.+++.+++.++|++
T Consensus 109 ~-i~R-k~Lt~eEi~~E~~al~~~G~krilLvtGE-~p~~~~~~Yi~~~i~~iy~~~~~~g~IrrvnVei~Pl~~eeY~~ 185 (471)
T PRK09613 109 E-LKR-KKLTQEEIREEVKALESMGHKRLALVAGE-HPVNCDIDYILESIKTIYSTKNGNGEIRRVNVNIAPTTVENYKK 185 (471)
T ss_pred C-CCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHH
T ss_conf 7-763-37899999999999997697318987146-88879889999999999875246785336889944798699999
Q ss_pred HHCCCCCEEEEECCC-CHHHHHCCC---CCCCHHHHHHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHHHCCC--
Q ss_conf 741576069751343-777732058---88898999999999998798-55770786689899999999999974088--
Q gi|254780485|r 154 LSKAGLDYYNHNIDT-SERFYPHVT---TTHTFEDRLQTLENVRKSGI-KVCCGGILGLGEMIDDRIDMLLTLANLST-- 226 (328)
Q Consensus 154 Lk~aG~~~~~~~let-~~~~~~~~~---~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~gEt~eeri~~l~~lr~l~~-- 226 (328)
|+++|++.|.+++|| .++.|++.| ||.+|++|++++++|.++|+ .++.|.|+|+.++..|.+..+.|...|+.
T Consensus 186 L~~aGigt~~vfQETYh~~tY~~~Hp~GpK~dy~~RL~a~dRA~~AGi~dVGiGaLlGL~dwr~e~~~l~~Ha~~Le~~y 265 (471)
T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPAGPKSNYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYRFEVLGLLMHAEHLEERF 265 (471)
T ss_pred HHHCCCCEEEEEEEECCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECCHHEECCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99869996999863078878998587898656333415788898759971360020265368999999999999999975
Q ss_pred --CCCEEECCCEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE-
Q ss_conf --88602054112048741244--5687989999999999996868721423115651656899999809988997786-
Q gi|254780485|r 227 --PPESIPINLLIPIPGSKFEE--NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT- 301 (328)
Q Consensus 227 --~~~~v~~~~~~p~~gt~l~~--~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~- 301 (328)
.+++|++|++.|..|+++.. ..+.++.++.|+||+.||++|++.|.+|+ || .++++...+..|+..+.+|..
T Consensus 266 g~g~hTIS~PRlrPa~g~~~~~~pp~~VsD~~f~qiiaa~RL~vP~tGiilST-RE--~~~~Rd~li~lGVsqmSAGS~T 342 (471)
T PRK09613 266 GVGPHTISVPRLEPALGSDLSENPPYLVSDEDFKKIVAILRLAVPYTGMILST-RE--SAELRDEVLELGVSQISAGSRT 342 (471)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEC-CC--CHHHHHHHHHHCCEEECCCCCC
T ss_conf 99985663675436899976678998679899999999999856545736853-79--9889998885346123345536
Q ss_pred -----EE------------CCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf -----65------------15888989999999982985324
Q gi|254780485|r 302 -----LL------------TAKNPSYNKDTILFNRLGLIPDL 326 (328)
Q Consensus 302 -----~~------------t~~g~~~~~~~~~i~~~G~~P~~ 326 (328)
-- -.+.++++|.+..+-+.|++|-|
T Consensus 343 ~vGGY~~~~~~~~~~~QF~i~D~Rs~dEvi~~l~~~gyiPSf 384 (471)
T PRK09613 343 GVGGYSESEQEEEEKAQFELGDHRSLDEVIRELCEMGYIPSF 384 (471)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 887667655677667886678998999999999977997730
No 22
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=1.4e-38 Score=278.21 Aligned_cols=309 Identities=17% Similarity=0.252 Sum_probs=245.2
Q ss_pred HHHCCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHCC----CCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 420023447899999999739---918999999999888628----9856999864530-78683423212433547775
Q gi|254780485|r 10 ENPTKKPKVWTSKEVFQIYNM---PFNDLLFWSHTVHRKNFE----PNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSK 81 (328)
Q Consensus 10 ~~~~~~~e~ls~eea~~L~~~---~~~el~~~Aa~~~r~~~~----g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~ 81 (328)
-.-...+..|+.+|+..|+.+ ++.+|+..|+.+|..-+. ++.|||++++.|+ ||.|.+.|.||+|.+.++..
T Consensus 22 l~r~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~rd~~~~~~g~~~viTyS~kVFiPLT~lCrd~C~YCtF~~~p~~~ 101 (846)
T PRK09234 22 LRRARDGVALDVDEAAVLLTARGDDLADLCASAARVRDAGLGAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVPGKL 101 (846)
T ss_pred HHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCC
T ss_conf 99865378778899999997234449999999998874033324898737657864314306876368877643688655
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--------------CCCHHHHHHHHHHHC-CCCCCEEEECCCC
Q ss_conf 6410006857999999999964983899730368887--------------442899999887621-3688324102569
Q gi|254780485|r 82 LKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPK--------------ERDLSIIVDMIKGVK-SLGLETCMTLGML 146 (328)
Q Consensus 82 ~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~--------------~~~~~~~~e~i~~i~-~~~~~i~~~~g~~ 146 (328)
.. .+++.|||++.++.....|+++.++..|..+.. ...++|+.++.+.+- +.++..|+|+|.+
T Consensus 102 ~~--~~l~~deV~~ia~~g~~~GC~EALftlGd~PE~r~~~a~~~L~~~G~~st~~Yl~~~~~~vl~etgLLPH~N~G~l 179 (846)
T PRK09234 102 RA--AYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVM 179 (846)
T ss_pred CC--CCCCHHHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 67--7789999999999999869956131468886774899999999719845999999999999986598887898889
Q ss_pred CHHHHHHHHCCCCCEEEEECCC-CHHHH------HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 9999998741576069751343-77773------2058888989999999999987985577078668989999999999
Q gi|254780485|r 147 SFEQAQILSKAGLDYYNHNIDT-SERFY------PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLL 219 (328)
Q Consensus 147 ~~~~~~~Lk~aG~~~~~~~let-~~~~~------~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~ 219 (328)
+.+++++||...+.+-. -||| +++++ +..+|.+.++.||++++.|.+++++.|+|+++|+|||++||++.|+
T Consensus 180 s~~el~~Lk~v~~SmGl-MLEs~s~rL~~~~g~~H~~sP~K~P~~Rl~tl~~AG~l~iPfTTGiLiGIGEt~~er~~sL~ 258 (846)
T PRK09234 180 SWSELARLKPVAPSMGM-MLETTSRRLFETKGGAHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGIGETLAERAESLF 258 (846)
T ss_pred CHHHHHHHHCCCCCCEE-EECCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999985236875204-51103464424789888899998989999999985404797321113257799999999999
Q ss_pred HHHHCCCCC---CEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHH-CHHHHHHHHHHCCC-
Q ss_conf 997408888---6020541120487412445687989999999999996868721423115651-65689999980998-
Q gi|254780485|r 220 TLANLSTPP---ESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMM-SDELQALCFFSGAN- 294 (328)
Q Consensus 220 ~lr~l~~~~---~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~-~~~~~~~~L~~GaN- 294 (328)
.|++++..+ +.|.+++|.|.+||+|.+.+.++.+|++++||++|++||. .|+||.. ..+ .+..-...|.+|+|
T Consensus 259 ai~~~h~~yghIQEVIiQNF~~K~~t~m~~~~~~~~~e~~~~ia~aR~il~~-~i~iQ~P-PNL~~~~~~~~ll~aGi~D 336 (846)
T PRK09234 259 AIRKSHREYGHIQEVIVQNFRAKPDTAMAGAPDAGLEDLLATIAVARLVLGP-KMRIQAP-PNLVSRDECAALLGAGIDD 336 (846)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCEEECC-CCCCCHHHHHHHHHCCCCC
T ss_conf 9999999739965798368889989868679997999999999999997399-8568559-9889867899999758745
Q ss_pred --EE--EECCEEE-CCCCCCHHHHHHHHHHCCCC
Q ss_conf --89--9778665-15888989999999982985
Q gi|254780485|r 295 --SI--FVGDTLL-TAKNPSYNKDTILFNRLGLI 323 (328)
Q Consensus 295 --~~--~~g~~~~-t~~g~~~~~~~~~i~~~G~~ 323 (328)
|| ++-+++- ...=+..++..+...++|+.
T Consensus 337 wGGISPvT~D~VNPE~pWP~l~~L~~~~~~~G~~ 370 (846)
T PRK09234 337 WGGVSPLTPDHVNPERPWPALDELAAVTAEAGFT 370 (846)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 5687888777789889998999999999965973
No 23
>PRK05481 lipoyl synthase; Provisional
Probab=99.83 E-value=7.4e-19 Score=146.05 Aligned_cols=186 Identities=20% Similarity=0.350 Sum_probs=146.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328)
-++|+.+|.||+-.... +. .++++|....|+.+..+|.++++|.+..+++ ++.-...+.+.|+.|++..+.+.
T Consensus 59 G~~CTR~C~FC~V~tG~----P~--~~D~~EP~~vA~av~~m~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 132 (289)
T PRK05481 59 GDICTRRCPFCDVATGR----PL--PLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELSPGTT 132 (289)
T ss_pred CCCCCCCCCCCCCCCCC----CC--CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 78765788774078899----89--8870307999999998289769996341666656554999999999985599977
Q ss_pred EECCC---C-CHH-HHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHHH
Q ss_conf 10256---9-999-9998741576069751343777732058888989999999999987--985577078668989999
Q gi|254780485|r 141 MTLGM---L-SFE-QAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGILGLGEMIDD 213 (328)
Q Consensus 141 ~~~g~---~-~~~-~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~~sg~l~G~gEt~ee 213 (328)
+.+-. . ..+ .++.+.+++.+-++||+||.|++|+.++|..+|++-|++++.|++. |+.+-||+|+|+|||.+|
T Consensus 133 iEvLiPDF~G~~~~~l~~v~~a~PdV~nHNiETV~rL~~~VRp~a~Y~rSL~vL~~~k~~~p~~~TKSgiMvGLGEt~eE 212 (289)
T PRK05481 133 IEVLIPDFRGRKDAALEIVVAAPPDVFNHNLETVPRLYKRVRPGADYERSLELLKRAKELDPGIPTKSGLMVGLGETDEE 212 (289)
T ss_pred EEECCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHH
T ss_conf 99707211469999999998567177643513104436233882338999999999997489982413567755788999
Q ss_pred HHHHHHHHHHCCCCCCEEECC-CEEECCCCCCCCCCCCCHHHHH
Q ss_conf 999999997408888602054-1120487412445687989999
Q gi|254780485|r 214 RIDMLLTLANLSTPPESIPIN-LLIPIPGSKFEENKKVDPIEHV 256 (328)
Q Consensus 214 ri~~l~~lr~l~~~~~~v~~~-~~~p~~gt~l~~~~~~~~~e~l 256 (328)
+++.|..||+.+. +.+.+. .+.|-+. -+.-..-.+|+++-
T Consensus 213 v~~~~~DL~~~gv--dilTiGQYL~Ps~~-hlpV~ryv~P~eF~ 253 (289)
T PRK05481 213 VLEVMDDLRAHGV--DILTIGQYLQPSRK-HLPVERYVTPEEFD 253 (289)
T ss_pred HHHHHHHHHHCCC--CEEEECCCCCCCCC-CCCCEECCCHHHHH
T ss_conf 9999999998199--89983403588866-68843356989999
No 24
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.83 E-value=8.6e-19 Score=145.61 Aligned_cols=188 Identities=23% Similarity=0.402 Sum_probs=150.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328)
-.+|+..|.||...... + ..++++|..+.|+..+.+|.++++|.+..+++ .+.-...+.+.|++|++..+.+.
T Consensus 77 G~~CTR~C~FC~V~~g~----P--~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ir~~~P~t~ 150 (306)
T COG0320 77 GDICTRRCRFCDVKTGR----P--NPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTT 150 (306)
T ss_pred CCHHCCCCCCCCCCCCC----C--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 51322678853147899----9--99997427899999998389869997531566656456899999999996399964
Q ss_pred EEC----CCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEECCCCCHHHH
Q ss_conf 102----56999999987415760697513437777320588889899999999999879--855770786689899999
Q gi|254780485|r 141 MTL----GMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSG--IKVCCGGILGLGEMIDDR 214 (328)
Q Consensus 141 ~~~----g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G--~~~~sg~l~G~gEt~eer 214 (328)
+.+ +--.+..+..+.+++.|-++||+||.|++|+.++++.+|++-|++++.+++.+ +.|-||+|+|+|||.+|+
T Consensus 151 iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev 230 (306)
T COG0320 151 IEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEV 230 (306)
T ss_pred EEEECCCCCCCHHHHHHHHHCCCCHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHH
T ss_conf 89838654678999999983696110045200001142568987688899999999985898631121355057768999
Q ss_pred HHHHHHHHHCCCCCCEEECC-CEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999997408888602054-112048741244568798999999
Q gi|254780485|r 215 IDMLLTLANLSTPPESIPIN-LLIPIPGSKFEENKKVDPIEHVRI 258 (328)
Q Consensus 215 i~~l~~lr~l~~~~~~v~~~-~~~p~~gt~l~~~~~~~~~e~lr~ 258 (328)
++.|..||+.+. +.+.+. .+.|-.. -+.-..-.+|+|+..+
T Consensus 231 ~e~m~DLr~~gv--dilTiGQYlqPS~~-HlpV~ryv~PeeF~~~ 272 (306)
T COG0320 231 IEVMDDLRSAGV--DILTIGQYLQPSRK-HLPVQRYVTPEEFDEL 272 (306)
T ss_pred HHHHHHHHHCCC--CEEEECCCCCCCCC-CCCCEECCCHHHHHHH
T ss_conf 999999998599--89973001477624-5883321188999999
No 25
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.83 E-value=1.5e-18 Score=144.08 Aligned_cols=198 Identities=22% Similarity=0.408 Sum_probs=146.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-HHHHHHHHHHCCCC
Q ss_conf 45307868342321243354777564100068579999999999649838997303688874428-99999887621368
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL-SIIVDMIKGVKSLG 136 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~-~~~~e~i~~i~~~~ 136 (328)
+++ |+.|+.+|.||.+...+... .......+++.+.++.....|...+.+.++ .+....++ +.+..+.+......
T Consensus 1 i~~-srGC~~~C~fC~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~~ 76 (204)
T cd01335 1 LEL-TRGCNLNCGFCSNPASKGRG--PESPPEIEEILDIVLEAKERGVEVVILTGG-EPLLYPELAELLRRLKKELPGFE 76 (204)
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCHHHHHHHHCCCCCE
T ss_conf 921-63738569879987547987--566788999999999998759869997246-76666532101354553068717
Q ss_pred CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHH
Q ss_conf 83241025699999998741576069751343-777732058-888989999999999987985577078668-989999
Q gi|254780485|r 137 LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVT-TTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDD 213 (328)
Q Consensus 137 ~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~-~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~ee 213 (328)
..+..+...++++.++.|+++|...+.+.+|+ +++.+..+. +.++++++++.++.+++.|+.+++++|+|+ +||.++
T Consensus 77 i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~G~p~et~~~ 156 (204)
T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEED 156 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHH
T ss_conf 99983365476999877540375422224356899999998488997599999999998679989999998279999999
Q ss_pred HHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC-CHHHHHHHHH
Q ss_conf 9999999974088886020541120487412445687-9899999999
Q gi|254780485|r 214 RIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV-DPIEHVRIIS 260 (328)
Q Consensus 214 ri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~-~~~e~lr~iA 260 (328)
..+.+..+.++.. +..+.+++|.|.+|||++...+. +..+++++++
T Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~p~~gt~~~~~~~~~~~~~~~~~~~ 203 (204)
T cd01335 157 DLEELELLAEFRS-PDRVSLFRLLPEEGTPLELAAPVVPAEKLLRLIA 203 (204)
T ss_pred HHHHHHHHHHHCC-CCEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHH
T ss_conf 9999999985189-9889898766228980333879799999999861
No 26
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.82 E-value=1.1e-18 Score=144.93 Aligned_cols=186 Identities=26% Similarity=0.425 Sum_probs=140.9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-----EEECCCCCCC-CCCHHHHHHHHH
Q ss_conf 6453078683423212433547775641000685799999999996498389-----9730368887-442899999887
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRY-----CMGAAWREPK-ERDLSIIVDMIK 130 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~-----~l~~~~~~~~-~~~~~~~~e~i~ 130 (328)
.+.. |..|+.+|.||+++.... .+...+.+.+.++++...+.|...+ .+..+..... ...+..+++.++
T Consensus 4 ~~~~-sRGC~~~C~fC~~~~~~~----~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 78 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSARG----KLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIR 78 (216)
T ss_pred EEEE-ECCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999-878198484298175889----64575999999999999970897653001100246898889999999999999
Q ss_pred HHCCC----CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCCEEE
Q ss_conf 62136----883241025699999998741576069751343-7777320588889899999999999879-85577078
Q gi|254780485|r 131 GVKSL----GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG-IKVCCGGI 204 (328)
Q Consensus 131 ~i~~~----~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G-~~~~sg~l 204 (328)
..... ...+.+++..++++.++.|+++|++.+.+++|| +++..+.+.+++++++.++.++.+++.| +.+++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~~~i 158 (216)
T smart00729 79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI 158 (216)
T ss_pred HHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 85143562699997060215899999999849986666735507899987179999999999999999858936877578
Q ss_pred ECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf 668-989999999999997408888602054112048741244568
Q gi|254780485|r 205 LGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328)
Q Consensus 205 ~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328)
+|+ +||.++..+.+..+.+++. +.+.+++|.|.|||||.....
T Consensus 159 ~GlP~et~e~~~~t~~~~~~~~~--~~i~~~~~~p~pgT~~~~~~~ 202 (216)
T smart00729 159 VGLPGETEEDFEETLKLLKELGP--DRVSIFPLSPRPGTPLAKLYK 202 (216)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCC--CEEEEECCEECCCCHHHHCCC
T ss_conf 67999999999999999994691--989987487569984665016
No 27
>PRK12928 lipoyl synthase; Provisional
Probab=99.82 E-value=2.2e-18 Score=142.92 Aligned_cols=190 Identities=20% Similarity=0.307 Sum_probs=148.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328)
-++|+.+|.||+-.... + ..++.+|-.+.|+.+..+|.++++|.+..+++ ++.-...+.+.|+.|++..+.+.
T Consensus 67 Gd~CTR~C~FC~V~tg~----P--~~lD~~EP~rvA~av~~m~LkyvVITSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 140 (290)
T PRK12928 67 GSICTRRCAFCQVAKGR----P--MPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTG 140 (290)
T ss_pred CCCCCCCCCCCCCCCCC----C--CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 78635489851553799----8--98980347999999998389768984123678866452999999999984599867
Q ss_pred EECCCC----CHH-HHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHHH
Q ss_conf 102569----999-9998741576069751343777732058888989999999999987--985577078668989999
Q gi|254780485|r 141 MTLGML----SFE-QAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGILGLGEMIDD 213 (328)
Q Consensus 141 ~~~g~~----~~~-~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~~sg~l~G~gEt~ee 213 (328)
+.+-.. ..+ .+..+.+++.+-++||+||.|++|+.++|..+|++-|++++.|++. |+.+-||+|+|+|||.+|
T Consensus 141 iEvLiPDF~G~~~~al~~v~~a~pdV~nHNiETV~rL~~~VRp~A~Y~rSL~vL~~ak~~~~~i~TKSgiMvGLGEt~eE 220 (290)
T PRK12928 141 IEVLTPDFWGGVARALATVLAAKPDCFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPGIPTKSGLMLGLGETEDE 220 (290)
T ss_pred EEEECHHHCCCHHHHHHHHHHCCCHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHH
T ss_conf 99707111368789999998468546545501204317124885508999999999997388852413458860588999
Q ss_pred HHHHHHHHHHCCCCCCEEECC-CEEECCCCCCCCCCCCCHHHH--HHHHH
Q ss_conf 999999997408888602054-112048741244568798999--99999
Q gi|254780485|r 214 RIDMLLTLANLSTPPESIPIN-LLIPIPGSKFEENKKVDPIEH--VRIIS 260 (328)
Q Consensus 214 ri~~l~~lr~l~~~~~~v~~~-~~~p~~gt~l~~~~~~~~~e~--lr~iA 260 (328)
+++.|..||+.+. +.+.+. .+.|-+. -+.-..-.+|+++ ++-+|
T Consensus 221 v~~~~~DLr~~gv--dilTiGQYL~Ps~~-h~pV~ryv~P~eF~~~~~~a 267 (290)
T PRK12928 221 VIETLRDLRAVDC--DRLTIGQYLRPSLA-HLPVQRYWTPEEFEALGQIA 267 (290)
T ss_pred HHHHHHHHHHCCC--CEEEECCCCCCCCC-CCCCEECCCHHHHHHHHHHH
T ss_conf 9999999998199--89982402588866-68833356989999999999
No 28
>pfam06968 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), EC:2.8.1.6, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this family) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers. This domain therefore may be involved in co-factor binding or dimerization (Finn, RD personal observation).
Probab=99.81 E-value=1.1e-19 Score=151.47 Aligned_cols=93 Identities=41% Similarity=0.695 Sum_probs=87.7
Q ss_pred ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHH
Q ss_conf 05411204874124456879899999999999968687214231156516568999998099889977866515888989
Q gi|254780485|r 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYN 311 (328)
Q Consensus 232 ~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~ 311 (328)
|+|+++|++|||+++.++++++|.+|+||++||++|++.|+++++|+....+.+.+++.+||||+++|+|++|++.++++
T Consensus 1 piN~L~P~~Gtpl~~~~~l~~~e~l~~ia~~Rl~~P~~~irla~gre~~l~d~~~~~~~sgans~~~G~yltt~g~r~~~ 80 (93)
T pfam06968 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMSGANSTFVGGYLTTSGNRSPD 80 (93)
T ss_pred CCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCEECCCCCCHH
T ss_conf 95130258999888999999999999999999986995289727962122515999998305304787835428999889
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999999829853
Q gi|254780485|r 312 KDTILFNRLGLIP 324 (328)
Q Consensus 312 ~~~~~i~~~G~~P 324 (328)
+|++||+++||+|
T Consensus 81 ~d~~mi~~~G~~p 93 (93)
T pfam06968 81 EDIAMLKDLGLEP 93 (93)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999999859999
No 29
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.80 E-value=1.4e-17 Score=137.38 Aligned_cols=178 Identities=20% Similarity=0.322 Sum_probs=141.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 786834232124335477756410006857999999999964--983899730368887442899999887621368832
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN--GATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLET 139 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~--G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i 139 (328)
|-.|+.+|.||...... ....++..|+|.|+++.+.+.+. |++++.+.-.. ...+-.+..++++.+++.++..
T Consensus 203 SRGCP~~C~FC~~p~~~--~Gr~~R~RSpe~VvdEIe~l~~~y~gv~~~~f~DD~---Ft~~~~r~~eic~~i~~l~i~W 277 (472)
T TIGR03471 203 GRGCPSKCTFCLWPQTV--GGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDT---FTDDKPRAEEIARKLGPLGVTW 277 (472)
T ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHCCCEE
T ss_conf 79988779687882102--688662159999999999999866897589994776---6789999999999998769827
Q ss_pred EEEC-CCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHH
Q ss_conf 4102-5699999998741576069751343-777732058888989999999999987985577078668-989999999
Q gi|254780485|r 140 CMTL-GMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRID 216 (328)
Q Consensus 140 ~~~~-g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~ 216 (328)
.++. ..++++.++.|++||...+.+++|+ +++..+.+.++.+.++-.++++.+|++||.+.+.+|+|+ |||.|+.-+
T Consensus 278 ~~~~Rv~~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~ 357 (472)
T TIGR03471 278 SCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRK 357 (472)
T ss_pred EEEEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 87630348999999999839848998037589999998538998999999999887579879999987799998899999
Q ss_pred HHHHHHHCCCCCCEEECCCEEECCCCCCCC
Q ss_conf 999997408888602054112048741244
Q gi|254780485|r 217 MLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328)
Q Consensus 217 ~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328)
.+...++++. +.+.++.++|.|||+|-+
T Consensus 358 Ti~fa~~l~~--d~~~~si~tPyPGT~ly~ 385 (472)
T TIGR03471 358 TIDFAKELNP--HTIQVSLAAPYPGTELYD 385 (472)
T ss_pred HHHHHHHCCC--CEEEEEEECCCCCCHHHH
T ss_conf 9999997598--908998725889969999
No 30
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=99.76 E-value=2.7e-18 Score=142.31 Aligned_cols=93 Identities=45% Similarity=0.784 Sum_probs=85.4
Q ss_pred ECCCEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCH
Q ss_conf 0541120487412445-687989999999999996868721423115651656899999809988997786651588898
Q gi|254780485|r 232 PINLLIPIPGSKFEEN-KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSY 310 (328)
Q Consensus 232 ~~~~~~p~~gt~l~~~-~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~ 310 (328)
|+|+|+|++||||++. +++++.|.+|+||++||++|++.|+++++|+.+.++.+..+|.+|||++|.|+.++|+.|.+.
T Consensus 1 pin~l~P~~Gtple~~~~~~~~~e~lk~ia~~Rl~~P~~~I~la~gr~~~~~~~~~~~l~aGan~~~~G~~~ltt~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCH
T ss_conf 96601368999778788999999999999999998699637973781200575899999834721404763307899587
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999999829853
Q gi|254780485|r 311 NKDTILFNRLGLIP 324 (328)
Q Consensus 311 ~~~~~~i~~~G~~P 324 (328)
.+|++||+++|++|
T Consensus 81 ~~d~~~i~~~G~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 89999999859999
No 31
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.76 E-value=2.4e-16 Score=129.25 Aligned_cols=230 Identities=20% Similarity=0.320 Sum_probs=175.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC-
Q ss_conf 6453078683423212433547775641000685799999999996498389973036888744289999988762136-
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL- 135 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~- 135 (328)
.|.+.-++|..||..|+ +++-..-- ..+.+++++...++.+.|...+.+.+|......-+++.|-+.++.+++.
T Consensus 13 sISVTG~yC~lnC~HCg--~~~L~~Mi---~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~ 87 (275)
T COG1856 13 SISVTGAYCSLNCPHCG--RHYLEHMI---KVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERT 87 (275)
T ss_pred EEEEECCCEEECCHHHH--HHHHHHHC---CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 37886363575381777--99998752---53257788899999845760589757868799742899999999987753
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC----CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC-CC
Q ss_conf 883241025699999998741576069751343----7777320588889899999999999879855770786689-89
Q gi|254780485|r 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT----SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLG-EM 210 (328)
Q Consensus 136 ~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let----~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~g-Et 210 (328)
++.+.++.|...++.+.+||++++|-+.+.+=. ..+.|.. ..+.++.++.++...+.|+++-.++++|+- -.
T Consensus 88 ~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l---~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gk 164 (275)
T COG1856 88 GLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKL---PKSVEDYLRSLLLLKENGIRVVPHITIGLDFGK 164 (275)
T ss_pred CEEEEEEEEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCEECEEEEEEECCCC
T ss_conf 74899985100178899998716868998612774899999768---863777788999999709425305999731685
Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHH--HHCHHHHHHH
Q ss_conf 99999999999740888860205411204874124456879899999999999968687214231156--5165689999
Q gi|254780485|r 211 IDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRA--MMSDELQALC 288 (328)
Q Consensus 211 ~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~--~~~~~~~~~~ 288 (328)
.+.-.+.+..|.+ ..++.+-+..|+|.+||.|...++++++|..+.+--+|=.+|+ .+.|.+.|. ....+++..+
T Consensus 165 i~~e~kaIdiL~~--~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~a 241 (275)
T COG1856 165 IHGEFKAIDILVN--YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEA 241 (275)
T ss_pred CCCHHHHHHHHHC--CCCCEEEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHH
T ss_conf 2333878899860--7997399999813885010577976989999999999985899-746741476753678788888
Q ss_pred HHHCCCEEE
Q ss_conf 980998899
Q gi|254780485|r 289 FFSGANSIF 297 (328)
Q Consensus 289 L~~GaN~~~ 297 (328)
..+|+|.|-
T Consensus 242 v~~gVd~It 250 (275)
T COG1856 242 VLAGVDRIT 250 (275)
T ss_pred HHCCCCEEE
T ss_conf 871885044
No 32
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.73 E-value=7.8e-15 Score=119.06 Aligned_cols=242 Identities=19% Similarity=0.218 Sum_probs=163.9
Q ss_pred CCCCHHHHHHHHCC----CH--HHHHHHHHHHHHHHC-----CCCEEEEEEEEEECCCCCCCCCCCCCCCCCC----CCC
Q ss_conf 47899999999739----91--899999999988862-----8985699986453078683423212433547----775
Q gi|254780485|r 17 KVWTSKEVFQIYNM----PF--NDLLFWSHTVHRKNF-----EPNHIQLSKLLNIKTGGCPENCGYCNQSVHN----KSK 81 (328)
Q Consensus 17 e~ls~eea~~L~~~----~~--~el~~~Aa~~~r~~~-----~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~----~~~ 81 (328)
+.+|.+|+...|.. .+ .+|+...+..-+.-. ..+.+.+..+|- .|+..|.||+|.... +..
T Consensus 127 ~g~~~~~i~~~l~~~y~vs~eK~~L~~~ia~~e~~~l~~~~~~~~~~SLYIHIP----FC~~kC~YCdF~s~~i~~~~~~ 202 (497)
T PRK08207 127 EGMSEEEIHEELKEEYLIREEKAELLQEVAKRELSFVPDLNKDKNEVSIYIGIP----FCPTRCLYCSFPSYPINGRKGL 202 (497)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC----CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 489999999999998668999999999999999987512323788479999818----9589878999803115776331
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC------CCEEEE---CCCCCHHH
Q ss_conf 64100068579999999999649--83899730368887442899999887621368------832410---25699999
Q gi|254780485|r 82 LKASKLINVDQVLKEAKNAKENG--ATRYCMGAAWREPKERDLSIIVDMIKGVKSLG------LETCMT---LGMLSFEQ 150 (328)
Q Consensus 82 ~~~~~~~~~Eei~~~a~~~~~~G--~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~------~~i~~~---~g~~~~~~ 150 (328)
...|...-..||...+......| +..+.++ |++|.....+.+..++..+++.+ .++.+. ++.++.+.
T Consensus 203 v~~Yl~aL~kEI~~~~~~l~~~~~~i~TIY~G--GGTPS~Ls~~ql~~ll~~i~~~F~~~~~~~EiTvEanRPdtit~ek 280 (497)
T PRK08207 203 VEPYLEALHYEIEEIGKYLKEKGLKIETIYFG--GGTPTSITAEEFEKLLEEIYESFPDVKNVKEFTVEAGRPDTITEEK 280 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECEEEEC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHH
T ss_conf 99999999999999998762379803569979--9810029999999999999986576899977999787989629999
Q ss_pred HHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECC-CCCHHHHHHHHHHHHHCCCC
Q ss_conf 998741576069751343-77773205888898999999999998798-5577078668-98999999999999740888
Q gi|254780485|r 151 AQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGILGL-GEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 151 ~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~ 227 (328)
++.|+++|++++.+++.| .+.....+...|+.++-.++.+.|+++|+ .++.-+|+|+ |||.++..+.|..+.+|.
T Consensus 281 L~~lk~~GvnRiSiGvQSf~~~~Lk~lGR~Ht~~~~~~a~~~ar~~GF~nIN~DLI~GLPgqt~~~~~~tL~~i~~L~-- 358 (497)
T PRK08207 281 LEVLKKYNVDRISINPQSMNDETLKAIGRHHTVEDIIEKFHLARELGFDNINMDLIIGLPGEGLEEFKHTLEEIEKLM-- 358 (497)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC--
T ss_conf 999997598758883532998999981899999999999999998599849774353799999999999999998139--
Q ss_pred CCEEECCCEEECCCCCCCCCC----CCCHHHHHHHHHHHHHHC
Q ss_conf 860205411204874124456----879899999999999968
Q gi|254780485|r 228 PESIPINLLIPIPGSKFEENK----KVDPIEHVRIISVARILM 266 (328)
Q Consensus 228 ~~~v~~~~~~p~~gt~l~~~~----~~~~~e~lr~iAi~RL~l 266 (328)
|+.+++--|.-..+++|.... .++.++..+++..++-++
T Consensus 359 Pd~iTvhsLaikr~s~l~~~~~~~~l~~~~~~~~m~~~~~~~~ 401 (497)
T PRK08207 359 PDSLTVHTLSIKRASRLTENKEKYKVADREEINAMMEEAEEWA 401 (497)
T ss_pred CCEEEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9825876665546860222455668998589999999999999
No 33
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=99.73 E-value=3e-15 Score=121.89 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=158.1
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 898569998645307868342321243354---77756410006857999999999964983899730368887442899
Q gi|254780485|r 48 EPNHIQLSKLLNIKTGGCPENCGYCNQSVH---NKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328)
Q Consensus 48 ~g~~V~~~~~in~~TN~C~~~C~fCaf~~~---~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328)
+|..|++-+ |.+ |..|...|.||.=-.. .....++..+|+.|||.+-++.++..|++.|-| |||+|...+++..
T Consensus 5 fGR~~~YLR-iSv-TDRCNlRC~YCMP~~~FG~~~~f~~~~~~Lt~eEi~rl~~~~v~~Gv~KvRl-TGGEPLlR~~l~~ 81 (346)
T TIGR02666 5 FGRRIDYLR-ISV-TDRCNLRCVYCMPEEGFGEGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRL-TGGEPLLRKDLVE 81 (346)
T ss_pred CCCEEEEEE-EEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCHHH
T ss_conf 677323577-876-1647872466688656788766787556689899999999999749716875-2777441367589
Q ss_pred HHHHHHHHCCCC-CCEE-EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCC-C
Q ss_conf 999887621368-8324-1025699999998741576069751343-7777320588-88989999999999987985-5
Q gi|254780485|r 125 IVDMIKGVKSLG-LETC-MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIK-V 199 (328)
Q Consensus 125 ~~e~i~~i~~~~-~~i~-~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~-~ 199 (328)
++..++.+.... ..|+ .+.|.+-+..++.||+||++++|+.||| .|+.|.++.. ..+.++-|+.++.|.++|++ +
T Consensus 82 lv~~~~~~~g~~~~di~lTTNG~~L~~~a~~L~eAGL~rvNvSLDsLd~~~F~~It~~~~~l~~Vl~Gi~aA~~~Gl~~v 161 (346)
T TIGR02666 82 LVARLAALPGIEIEDIALTTNGLLLERHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALEAGLKPV 161 (346)
T ss_pred HHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 99999842785433554100522358899999971888036540148889999985789988899999999996599831
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC-CC-CCCCCCCHHHHHHHHHHHH
Q ss_conf 7707866898999999999999740888860205411204874-12-4456879899999999999
Q gi|254780485|r 200 CCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGS-KF-EENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 200 ~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt-~l-~~~~~~~~~e~lr~iAi~R 263 (328)
--.+++==|=..+|+.+++...++-..+-=+|=++++ -.. .. ......+.+|.+.-+.-.-
T Consensus 162 KlN~V~~~G~Nd~Ei~~l~~~~~~~~~~lRFIE~MP~---G~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (346)
T TIGR02666 162 KLNTVVLRGVNDDEIVDLAEFAKERGVTLRFIELMPL---GEGGNGWRGKEFVSADEILERLEQAF 224 (346)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCC---CCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 4766762788977899999999757960788751546---76300000034535899999999743
No 34
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=99.72 E-value=3.2e-15 Score=121.64 Aligned_cols=229 Identities=19% Similarity=0.352 Sum_probs=171.1
Q ss_pred HHHHHHHCCCCEEE-EEEEEEECCCCCCCC--------CCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99988862898569-998645307868342--------3212433547775--641000685799999999996498389
Q gi|254780485|r 40 HTVHRKNFEPNHIQ-LSKLLNIKTGGCPEN--------CGYCNQSVHNKSK--LKASKLINVDQVLKEAKNAKENGATRY 108 (328)
Q Consensus 40 a~~~r~~~~g~~V~-~~~~in~~TN~C~~~--------C~fCaf~~~~~~~--~~~~~~~~~Eei~~~a~~~~~~G~~~~ 108 (328)
.+..+++| |.+|+ +..+.-| | |+|. |.||.-...+.-- .......-.|+|.+.++...+.|+..+
T Consensus 6 ~~ylk~~y-G~kV~Ki~~~gGF-~--CPNRDGT~G~GGCtfC~~a~~~~f~~~~~~~~~~~~~~i~~~~~~~~k~G~kkf 81 (307)
T TIGR01212 6 GDYLKERY-GEKVFKITLHGGF-S--CPNRDGTIGRGGCTFCNDASKPSFADEVTQARIPIKEQIKKRKKKYKKDGIKKF 81 (307)
T ss_pred HHHHHHHH-CCCEEEEEEECCC-C--CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 57999980-8944999864578-8--778887002577252178888852451023544689999999976531573157
Q ss_pred EE--ECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC----CCCHHH---HHHHHCCCCC-EEEEECCC-CHHHHHCCC
Q ss_conf 97--3036888744289999988762136883241025----699999---9987415760-69751343-777732058
Q gi|254780485|r 109 CM--GAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG----MLSFEQ---AQILSKAGLD-YYNHNIDT-SERFYPHVT 177 (328)
Q Consensus 109 ~l--~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g----~~~~~~---~~~Lk~aG~~-~~~~~let-~~~~~~~~~ 177 (328)
.+ |+..+ ..-++|.+-++....-...--|.+++| .+.++. ++.+++-|.+ ++.++|.| +.+...++=
T Consensus 82 ~aYFQ~yTn--TYApve~Lk~~y~~aL~~~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~TL~~IN 159 (307)
T TIGR01212 82 IAYFQAYTN--TYAPVEVLKEMYEQALSEDDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRTLKKIN 159 (307)
T ss_pred EEEECCCCC--CCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHC
T ss_conf 899738876--500268888999987632780577536889877478999999995497589996053565589999851
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCC
Q ss_conf 888989999999999987985577078668-9899999999999974088886020541120487412445------687
Q gi|254780485|r 178 TTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKV 250 (328)
Q Consensus 178 ~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~ 250 (328)
..|++.+.+++...+|+.||++|+++|+|+ ||+++|.++.+..+.+|+. ++|-+-+|+=.+||+|+.. ..+
T Consensus 160 RgHd~~~y~~a~~~~~krGikVC~H~I~GLPgE~~~~~~eTak~~~~l~v--dGiKiH~LhvvkGt~m~k~Y~~G~~~~l 237 (307)
T TIGR01212 160 RGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMLETAKIVASLDV--DGIKIHPLHVVKGTKMAKQYEKGELKTL 237 (307)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEEEEEEECCHHHHHHHCCCEEEC
T ss_conf 43787899999999976598899998742898888899999999983798--8488720178735757887545740104
Q ss_pred CHHHHHHHHH-HHHHHCCCCCCE-EEEH
Q ss_conf 9899999999-999968687214-2311
Q gi|254780485|r 251 DPIEHVRIIS-VARILMPKSRLR-LAAG 276 (328)
Q Consensus 251 ~~~e~lr~iA-i~RL~lP~~~i~-i~~~ 276 (328)
+.+||...++ ..|+.=|++.++ |++.
T Consensus 238 ~~e~Y~~~~~d~le~lpP~vv~HRi~~d 265 (307)
T TIGR01212 238 SLEEYISLACDFLEHLPPEVVVHRISGD 265 (307)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 7677999999998508985599841277
No 35
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.70 E-value=6.7e-15 Score=119.53 Aligned_cols=204 Identities=17% Similarity=0.235 Sum_probs=147.3
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 89856999864530786834232124335477756410006857999999999964983899730368887442899999
Q gi|254780485|r 48 EPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVD 127 (328)
Q Consensus 48 ~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e 127 (328)
+|..+++-+ +.+ |..|..+|.||--. . ....++...+|.||+...++.+.+.|++.+-+ +||++...+++..+++
T Consensus 9 ~gR~i~yLR-iSv-TdrCN~rC~YCmpe-g-~~~~~~~~~Ls~eEi~~l~~~~~~~Gi~kvRl-TGGEPLlR~dl~~li~ 83 (329)
T PRK13361 9 FGRTVTYLR-LSV-TDRCDFRCVYCMSE-D-PCFLPRDQVLTLEELAWLAQAFTELGVRKIRL-TGGEPLVRTGCDQLVA 83 (329)
T ss_pred CCCCCCCEE-EEE-ECCCCCCCCCCCCC-C-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCHHHHHH
T ss_conf 899048667-885-24405838787998-9-98787024689999999999999729528996-2788223568899999
Q ss_pred HHHHHCCCC-CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEE
Q ss_conf 887621368-83241025699999998741576069751343-77773205888898999999999998798-5577078
Q gi|254780485|r 128 MIKGVKSLG-LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGI 204 (328)
Q Consensus 128 ~i~~i~~~~-~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l 204 (328)
.++.+.... +.+. +.|.+-...+..|++||++++++.+|| .|+.|.++......++.++.++.|.++|+ ++--.++
T Consensus 84 ~l~~~~gi~~islT-TNG~lL~~~a~~Lk~aGL~rvNISLDsLd~~~f~~ITr~~~l~~Vl~gI~aA~~~G~~~VKiN~V 162 (329)
T PRK13361 84 RLGKLPGLEELSMT-TNGSRLARFAAELADAGLKRLNISLDTLNPDLFAALTRNGRLERVIAGIDAAKAAGFERIKLNAV 162 (329)
T ss_pred HHHHCCCCCEEEEE-CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 98617997718996-64776899999999779986997357799999997728997699999999999779973889999
Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC-CCCCCCCCCCHHHHHHHHH
Q ss_conf 6689899999999999974088886020541120487-4124456879899999999
Q gi|254780485|r 205 LGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPG-SKFEENKKVDPIEHVRIIS 260 (328)
Q Consensus 205 ~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g-t~l~~~~~~~~~e~lr~iA 260 (328)
+=-|-...|+.+.+...++......++- |.|..+ .........+.++.+..+.
T Consensus 163 ~lrg~NddEi~~l~~~~~~~~~~vRFIE---~MP~g~~~~~~~~~~~~~~ei~~~i~ 216 (329)
T PRK13361 163 ILRGQNDDEVLDLVEFCRERGLDIAFIE---EMPLGEIDERKRARHCSSDEVRAIIE 216 (329)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEE---EEECCCCCCCHHCCCCCHHHHHHHHH
T ss_conf 8368788899999999974898369887---43268755400026567999999998
No 36
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.68 E-value=1.3e-14 Score=117.50 Aligned_cols=209 Identities=18% Similarity=0.271 Sum_probs=148.6
Q ss_pred HHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH
Q ss_conf 88628985699986453078683423212433547-77564100068579999999999649838997303688874428
Q gi|254780485|r 44 RKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN-KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL 122 (328)
Q Consensus 44 r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~-~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~ 122 (328)
...| |..+.+-+ +.+ |..|..+|.||--.... ....++...+|.||+...++.+.+.|++.+.+ +||++....++
T Consensus 9 ~D~f-GR~i~yLR-iSv-TdrCN~rC~YCmpe~~~~~~~~~~~~~Ls~eEi~~i~~~~~~lGi~kiRl-TGGEPLlR~di 84 (334)
T PRK00164 9 IDRF-GRKVTYLR-LSV-TDRCNFRCTYCMPEGYFGLTFLPKEELLSLEEIERLVRAFAALGVRKIRL-TGGEPLLRKDL 84 (334)
T ss_pred CCCC-CCCCCCEE-EEE-ECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCH
T ss_conf 1688-99348667-885-04404738778997777878887342299999999999999709627986-07884323578
Q ss_pred HHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CC
Q ss_conf 99999887621368-83241025699999998741576069751343-77773205888898999999999998798-55
Q gi|254780485|r 123 SIIVDMIKGVKSLG-LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KV 199 (328)
Q Consensus 123 ~~~~e~i~~i~~~~-~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~ 199 (328)
..+++.++.+.... +.+ .+.|.+-...+..|++||++++++.||| .|+.|.++.....+++.++.++.|.++|+ ++
T Consensus 85 ~~li~~l~~~~gi~~v~l-TTNG~lL~~~a~~Lk~aGL~riNISLDsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~~v 163 (334)
T PRK00164 85 EDIIARLAALPGIRDLAL-TTNGYLLARRAAALKDAGLTRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLEPV 163 (334)
T ss_pred HHHHHHHHHCCCCCCEEE-ECCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 999999863279751788-4448899999999998599869971131899999998489975999999999995898761
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 77078668989999999999997408888602054112048-74124456879899999999
Q gi|254780485|r 200 CCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP-GSKFEENKKVDPIEHVRIIS 260 (328)
Q Consensus 200 ~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~-gt~l~~~~~~~~~e~lr~iA 260 (328)
-..+++=-|-...|+.+.+...++.+..--++- |.|.. +.........+.++.+..+.
T Consensus 164 KiN~V~~~g~N~dEi~~li~~~~~~~i~vRFIE---~Mp~g~~~~~~~~~~~~~~~i~~~l~ 222 (334)
T PRK00164 164 KVNAVLMKGVNDDEIPDLLRWAKDRGIQLRFIE---LMPTGEGNEWFRDHHLSGAEIRARLA 222 (334)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEE---EECCCCCCCHHHCCCCCHHHHHHHHH
T ss_conf 689996379898999999999964696599999---82167776435306548999999998
No 37
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=99.64 E-value=1.6e-14 Score=117.05 Aligned_cols=169 Identities=21% Similarity=0.347 Sum_probs=127.3
Q ss_pred CCCEEE-EEEEEEECCCCCCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHH
Q ss_conf 898569-998645307868342321243354777---5641000685799999999996498389973036888744289
Q gi|254780485|r 48 EPNHIQ-LSKLLNIKTGGCPENCGYCNQSVHNKS---KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLS 123 (328)
Q Consensus 48 ~g~~V~-~~~~in~~TN~C~~~C~fCaf~~~~~~---~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~ 123 (328)
+|..|+ ++. -+ |..|..+|-||=+=....+ ..+....||+|+|...++.+.+.|+..|-| +||+|....|
T Consensus 5 fGR~v~~LRi--s~-T~~CN~~CfyCH~EG~~~~~~r~gp~~~~Ls~eei~~~~~~a~~fGV~kvKl-TGGEPlLR~D-- 78 (324)
T TIGR02668 5 FGRPVTSLRI--SV-TDECNLSCFYCHREGEDESRGRQGPGGNELSPEEIERIVRVASEFGVRKVKL-TGGEPLLRKD-- 78 (324)
T ss_pred CCCEECCCEE--EE-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCHHHH--
T ss_conf 6872046315--77-3423864221036788888888888644558999999999998708832775-1787434566--
Q ss_pred HHHHHHHHHCCCCC-CEEE-ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCC--CCCCHHHHHHHHHHHHHCCC-
Q ss_conf 99998876213688-3241-025699999998741576069751343-777732058--88898999999999998798-
Q gi|254780485|r 124 IIVDMIKGVKSLGL-ETCM-TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVT--TTHTFEDRLQTLENVRKSGI- 197 (328)
Q Consensus 124 ~~~e~i~~i~~~~~-~i~~-~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~--~~~~~~~~l~~~~~a~~~G~- 197 (328)
+.++|+.++.... .|.+ +.|.+-+..++.||+||+|++|+.|+| +++.|+++- +....++-++-++.|.++|+
T Consensus 79 -~~~Ii~~~~~~~~~~vSmTTNG~LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~ 157 (324)
T TIGR02668 79 -LIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDAGLT 157 (324)
T ss_pred -HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf -9999986146750344203031448989999998285613120267886788864489986078999999999972898
Q ss_pred CCCCEEEECCCCCHHH-HHHHHHHHHH
Q ss_conf 5577078668989999-9999999974
Q gi|254780485|r 198 KVCCGGILGLGEMIDD-RIDMLLTLAN 223 (328)
Q Consensus 198 ~~~sg~l~G~gEt~ee-ri~~l~~lr~ 223 (328)
|+---|++=-|-+..+ .=+++...++
T Consensus 158 PVKlN~Vvl~G~N~~~~~~~m~~f~~~ 184 (324)
T TIGR02668 158 PVKLNMVVLKGINDNEEIPDMVEFAAD 184 (324)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 137888875477885007999999987
No 38
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.62 E-value=1.1e-13 Score=111.43 Aligned_cols=210 Identities=13% Similarity=0.178 Sum_probs=149.6
Q ss_pred HCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCC
Q ss_conf 628985699986453078683423212433547775---64100068579999999999----64983899730368887
Q gi|254780485|r 46 NFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSK---LKASKLINVDQVLKEAKNAK----ENGATRYCMGAAWREPK 118 (328)
Q Consensus 46 ~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~---~~~~~~~~~Eei~~~a~~~~----~~G~~~~~l~~~~~~~~ 118 (328)
..+++...+..+|- .|...|.||.|....... ...| .+.+.++++... ..-+..+.+ ||++|.
T Consensus 40 ~~~~~~LsLYiHiP----FC~~~C~YC~f~~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~~tiy~--GGGTPS 109 (436)
T PRK08208 40 REYEDALHLYIHIP----FCESRCGFCNLFTCTGADNEFIDSY----LDALIRQARQVALALGGVHFASFAV--GGGTPT 109 (436)
T ss_pred CCCCCCEEEEEECC----CCCCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHHHHHHCCCCCEEEEEE--CCCHHH
T ss_conf 39999749998704----4079588999837668983389999----9999999999876638983568996--794322
Q ss_pred CCCHHHHHHHHHHHCCC------CCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHH
Q ss_conf 44289999988762136------8832--41025699999998741576069751343-777732058888989999999
Q gi|254780485|r 119 ERDLSIIVDMIKGVKSL------GLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTL 189 (328)
Q Consensus 119 ~~~~~~~~e~i~~i~~~------~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~ 189 (328)
....+.+..++..+++. ..++ -++++.++.+.++.|+++|++++.+++++ .+...+.+...|+.++-.+++
T Consensus 110 ~L~~~~l~~ll~~l~~~f~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGVQsf~~~~L~~lgR~h~~~~~~~ai 189 (436)
T PRK08208 110 LLNIAQLEKLFFSVFDVLGVDLWNIPKSVETSPTTTTAEKLALLNAFGVNRVSIGVQSFHDSELHALHRRQNAASVHQAL 189 (436)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf 19999999999999985899846715999866363609999999973987278741448989999846889999999999
Q ss_pred HHHHHCCC-CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99998798-5577078668-989999999999997408888602054112048741244568798999999999999686
Q gi|254780485|r 190 ENVRKSGI-KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMP 267 (328)
Q Consensus 190 ~~a~~~G~-~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP 267 (328)
+.++++|+ .++.-.|||+ |+|.++..+.+..+-+++. +.+++-.+.-.|+|++.....+.+++.+.+...+.=.|.
T Consensus 190 ~~~r~~gf~niniDLIyGlPgQt~~~~~~~l~~~l~l~p--~HIS~Y~L~iep~T~l~~~~~~~~d~~~~my~~a~~~L~ 267 (436)
T PRK08208 190 ELIRAAHFPSLNIDLIYGIPGQTHASFMESLHQALVYRP--EELFLYPLYVRPLTGLGRRGTAWDDNMHSLYVLARDLLL 267 (436)
T ss_pred HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCC--CEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999981998575524436999999999999999982798--989876330478983012479893799999999999999
No 39
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.62 E-value=2.9e-14 Score=115.21 Aligned_cols=209 Identities=23% Similarity=0.362 Sum_probs=143.7
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 699986453078683423212433547775641-------0006857999999999964983899730368887442899
Q gi|254780485|r 52 IQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKA-------SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328)
Q Consensus 52 V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~-------~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328)
++.+....+ -..|..+|+||+|++...+..+. +.....+++++...... .-+.++|++.-.++....+.-+
T Consensus 29 ~ta~l~t~~-~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~-g~~~rici~~i~~p~~~~d~~~ 106 (339)
T COG2516 29 TTAYLMTTY-PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL-GNFKRICIQQIAYPRALNDLKL 106 (339)
T ss_pred CEEEEEEEC-CCCEEECHHHCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-CCCCCCCCEEECCCCCCCHHHH
T ss_conf 056656622-78566465547355523458875036632662000787776766654-0214441100025542301666
Q ss_pred HHHHHHHHCCCCCCEEEE--CCCCC-HHHHHHHHCCCCCEEEEECCC-CHHHHHCCC----CCCCHHHHHHHHHHHHHC-
Q ss_conf 999887621368832410--25699-999998741576069751343-777732058----888989999999999987-
Q gi|254780485|r 125 IVDMIKGVKSLGLETCMT--LGMLS-FEQAQILSKAGLDYYNHNIDT-SERFYPHVT----TTHTFEDRLQTLENVRKS- 195 (328)
Q Consensus 125 ~~e~i~~i~~~~~~i~~~--~g~~~-~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~----~~~~~~~~l~~~~~a~~~- 195 (328)
+++-++. ..+..+.++ +...+ .+.+...++.|.+.+.+.+|. .+++|.++. ..|||++.++.++.+-++
T Consensus 107 i~~~~~~--~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~ 184 (339)
T COG2516 107 ILERLHI--RLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAF 184 (339)
T ss_pred HHHHHHH--CCCCCEEHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4366510--24785012023302451687899885423553578875077789998741589871888999999999985
Q ss_pred C-CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9-855770786689899999999999974088886020541120487412445687989999999999996868
Q gi|254780485|r 196 G-IKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 196 G-~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~ 268 (328)
| .+++.++++|+||+.++.++.+...++.+. .+.++.|.|..||.|++..+++...|-| +-++|.+..+
T Consensus 185 ~k~rv~ihliVglGesD~~~ve~~~~v~~~g~---~v~Lfaf~P~~gt~me~r~~~pve~Yrk-~q~a~yli~~ 254 (339)
T COG2516 185 GKGRVGIHLIVGLGESDKDIVETIKRVRKRGG---IVSLFAFTPLKGTQMENRKPPPVERYRK-IQVARYLIGN 254 (339)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHC
T ss_conf 46774515796048756899999999985586---4899986465566445789986899999-9999999734
No 40
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.61 E-value=2.2e-13 Score=109.38 Aligned_cols=191 Identities=16% Similarity=0.210 Sum_probs=135.9
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCCCE
Q ss_conf 68342321243354777-56410006857999999999964983899730368887442899999887621---368832
Q gi|254780485|r 64 GCPENCGYCNQSVHNKS-KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK---SLGLET 139 (328)
Q Consensus 64 ~C~~~C~fCaf~~~~~~-~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~---~~~~~i 139 (328)
.|...|.||.|+..... ....+...-.+++..+++......+..+.+++ ++|.....+.+..++..++ ..+.++
T Consensus 15 FC~~kC~YCdF~s~~~~~~~~~~~~~~~~el~~~~~~~~~~~i~TIyfGG--GTPSlL~~~~l~~ll~~i~~~~~~~~Ei 92 (353)
T PRK05904 15 FCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGG--GTPNCLNDQLLDILLSTIKPYVDNNCEF 92 (353)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--CCCHHCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99870899989841887685999999999999998764799544899899--8602089999999999999763878359
Q ss_pred EE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECC-CCCHHHH
Q ss_conf 41--025699999998741576069751343-77773205888898999999999998798-5577078668-9899999
Q gi|254780485|r 140 CM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGILGL-GEMIDDR 214 (328)
Q Consensus 140 ~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~-gEt~eer 214 (328)
.+ +++.++.+.++.++++|++++.++++| .+...+.+...|+.++-+++++.++++|+ .++.-+|||+ |+|.++.
T Consensus 93 TiEaNP~~~~~ekL~~lk~~GVNRiSlGVQSf~d~~Lk~LGR~H~~~~~~~ai~~~r~~Gf~nIsiDLIyGlPgQT~~~~ 172 (353)
T PRK05904 93 TIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDL 172 (353)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECEEECCCCCCHHHH
T ss_conf 99865144878999999964987688874559989999838999899999999999981997360042635999999999
Q ss_pred HHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC-CCHHHHHHH
Q ss_conf 99999997408888602054112048741244568-798999999
Q gi|254780485|r 215 IDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK-VDPIEHVRI 258 (328)
Q Consensus 215 i~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~-~~~~e~lr~ 258 (328)
.+.|..+-+++. +.+++-.++-.|||++..... +++++....
T Consensus 173 ~~~L~~~l~l~p--~HiS~Y~LtiE~gT~~~~~~~~~~~d~~~~~ 215 (353)
T PRK05904 173 DEVFNFILKHKI--NHISFYSLEIKEGSILKKYHYTIDEDKEAEQ 215 (353)
T ss_pred HHHHHHHHHCCC--CCEEEEEEEECCCCHHCCCCCCCCCHHHHHH
T ss_conf 999999996599--9178888898579732047889992799999
No 41
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.61 E-value=3.6e-13 Score=107.94 Aligned_cols=199 Identities=19% Similarity=0.247 Sum_probs=139.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4530786834232124335477--7564100068579999999999649---8389973036888744289999988762
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNK--SKLKASKLINVDQVLKEAKNAKENG---ATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~--~~~~~~~~~~~Eei~~~a~~~~~~G---~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328)
++|+ .|...|.||.|..... .....| .+.+.++.+.....+ +..+.+ ||++|.....+.+.+++..+
T Consensus 6 iHIP--FC~~~C~yC~f~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~tiy~--GGGTPs~L~~~~l~~ll~~i 77 (377)
T PRK08599 6 IHIP--FCEHICYYCDFNKVFIENQPVDEY----LDALIKEMESTVAKYIRKLKTIYI--GGGTPTALSAEQLERLLNAI 77 (377)
T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCCHHHHHHHHHHH
T ss_conf 9727--899868999691646898779999----999999999765514995579997--99810009999999999999
Q ss_pred CCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEE
Q ss_conf 136-----88324--1025699999998741576069751343-777732058888989999999999987985-57707
Q gi|254780485|r 133 KSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGG 203 (328)
Q Consensus 133 ~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~ 203 (328)
++. ..++. +++..++.+.++.|+++|++++.+++++ .+...+.+...|+.++-+++++.++++|+. ++.-+
T Consensus 78 ~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~l~~lgR~h~~~~~~~~i~~~r~~gf~~iniDL 157 (377)
T PRK08599 78 HRTLPLSDLEEFTFEANPGDLTKEKLQVLKDYGVNRISLGVQTFNDELLKKIGRTHNEEDVYESIANAKKAGFKNISIDL 157 (377)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99769776732799955151639999999970998799965359879999868999899999999999975997411565
Q ss_pred EECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHC
Q ss_conf 8668-989999999999997408888602054112048741244------56879899999999999968
Q gi|254780485|r 204 ILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE------NKKVDPIEHVRIISVARILM 266 (328)
Q Consensus 204 l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~------~~~~~~~e~lr~iAi~RL~l 266 (328)
|||+ ++|.++..+.+..+-+++. +.+++..+.-.|+|++.. .+.|+.++...+...++=.|
T Consensus 158 IyGlP~Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~m~~~~~~~L 225 (377)
T PRK08599 158 IYALPGQTIEDVKESLDKALALDI--PHYSLYSLILEPKTVFYNLMRKGKLRLPTEDLEAEMYEYLMSEM 225 (377)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCC--CEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 427888989999999999973063--63455442335887688887559878999799999999999999
No 42
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.59 E-value=8.1e-13 Score=105.58 Aligned_cols=200 Identities=22% Similarity=0.319 Sum_probs=139.9
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 453078683423212433547775--64100068579999999999-649838997303688874428999998876213
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNKSK--LKASKLINVDQVLKEAKNAK-ENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~~~--~~~~~~~~~Eei~~~a~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328)
++++ .|...|.||.|....... ..+| .+.+.++++... ..-++.+.++ |++|.....+.+..++..+++
T Consensus 8 iHiP--FC~~~C~yC~f~~~~~~~~~~~~Y----~~~L~~Ei~~~~~~~~i~tiy~G--GGTPs~l~~~~l~~l~~~i~~ 79 (374)
T PRK05799 8 IHIP--FCKQKCLYCDFPSYSGKEDLMMEY----IKALSKEIVNKTKNKKIKSIFIG--GGTPSYLSLEALEILLKTIKK 79 (374)
T ss_pred EEEC--CCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHHCCCCCEEEEEEC--CCCCCCCCHHHHHHHHHHHHH
T ss_conf 9948--999858999794748870069999----99999999976579815499979--965022999999999999985
Q ss_pred C----CCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEC
Q ss_conf 6----8832--41025699999998741576069751343-777732058888989999999999987985-57707866
Q gi|254780485|r 135 L----GLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGGILG 206 (328)
Q Consensus 135 ~----~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~l~G 206 (328)
. ..++ -++++.++.+.++.|+++|++++.++++| .+...+.+...|+.++-.++++.+++.|++ ++.-.|||
T Consensus 80 ~~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~~l~~lgR~h~~~~~~~ai~~~~~~gf~niniDLIyG 159 (374)
T PRK05799 80 LNKKENLEFTVEGNPGTFTEEKLKILKSMGVNRISIGLQAWQNSLLKTLGRIHTFEEFLENYKLARKLGFNNINVDLMFG 159 (374)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 68887845899856677899999999971997588853358899999847999899999999999975997466885448
Q ss_pred C-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8-989999999999997408888602054112048741244------568798999999999999686
Q gi|254780485|r 207 L-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE------NKKVDPIEHVRIISVARILMP 267 (328)
Q Consensus 207 ~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~------~~~~~~~e~lr~iAi~RL~lP 267 (328)
+ |+|.++....+..+-+++. +.+++..+.-.|+|++.. .+.++.++...+...+.=.|.
T Consensus 160 lPgQt~~~~~~~l~~~~~l~p--~hiS~Y~L~i~~~t~~~~~~~~~~~~~p~~~~~~~my~~~~~~L~ 225 (374)
T PRK05799 160 LPNQTLEDWKETLEKVVELSP--EHISCYSLIIEEGTPFYNLYENGKLKLPKEEEERKMYHYTIEFLK 225 (374)
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CEEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 988878999999999984172--501365420578867998875188899999999999999999998
No 43
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.58 E-value=1.2e-12 Score=104.41 Aligned_cols=205 Identities=19% Similarity=0.261 Sum_probs=147.3
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 89856999864530786834232124335477756410006857999999999964983899730368887442899999
Q gi|254780485|r 48 EPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVD 127 (328)
Q Consensus 48 ~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e 127 (328)
+|..+.+-+ +.+ |..|..+|.||-.... ....++...+|.|||...++...+.|...+-| +||++...+++..++.
T Consensus 6 ~gR~~~~LR-iSv-TdrCNfrC~YCm~eg~-~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRl-TGGEPllR~dl~eIi~ 81 (322)
T COG2896 6 FGRPVRYLR-ISV-TDRCNFRCTYCMPEGP-LAFLPKEELLSLEEIRRLVRAFAELGVEKVRL-TGGEPLLRKDLDEIIA 81 (322)
T ss_pred CCCEECEEE-EEE-ECCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHCCHHHHHH
T ss_conf 588702079-998-2673774644688886-56676545489999999999999739645897-1898313327999999
Q ss_pred HHHHHCCCCCCEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEE
Q ss_conf 887621368832410-25699999998741576069751343-77773205888898999999999998798-5577078
Q gi|254780485|r 128 MIKGVKSLGLETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGI 204 (328)
Q Consensus 128 ~i~~i~~~~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l 204 (328)
.++.. ....+.++ .|.+.....+.||+||++++++.+|| .++.|.++-....+++-++-++.|.++|+ ++.-.+.
T Consensus 82 ~l~~~--~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~V 159 (322)
T COG2896 82 RLARL--GIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTV 159 (322)
T ss_pred HHHHC--CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 87434--6442887445676799999999759868995034499899998867892999999999999769985578889
Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC-CCCCCCCCCCHHHHHHHHHH
Q ss_conf 6689899999999999974088886020541120487-41244568798999999999
Q gi|254780485|r 205 LGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPG-SKFEENKKVDPIEHVRIISV 261 (328)
Q Consensus 205 ~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g-t~l~~~~~~~~~e~lr~iAi 261 (328)
+=-|=...|+.+.+...++.+..-.++- +.|... +........+..+.++.+.-
T Consensus 160 v~kgvNd~ei~~l~e~~~~~~~~lrfIE---~m~~g~~~~~~~~~~~~~~~i~~~l~~ 214 (322)
T COG2896 160 LMKGVNDDEIEDLLEFAKERGAQLRFIE---LMPLGEGNSWRLDKYLSLDEILRKLEE 214 (322)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEE---EEECCCCCCHHHHCCCCHHHHHHHHHH
T ss_conf 8469887899999999852698447999---866686540344044549999999986
No 44
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.58 E-value=1.1e-12 Score=104.80 Aligned_cols=208 Identities=15% Similarity=0.230 Sum_probs=141.5
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCC---CCCCCCC--CCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 986453078683423212433547---7756410--00685799999999996--4983899730368887442899999
Q gi|254780485|r 55 SKLLNIKTGGCPENCGYCNQSVHN---KSKLKAS--KLINVDQVLKEAKNAKE--NGATRYCMGAAWREPKERDLSIIVD 127 (328)
Q Consensus 55 ~~~in~~TN~C~~~C~fCaf~~~~---~~~~~~~--~~~~~Eei~~~a~~~~~--~G~~~~~l~~~~~~~~~~~~~~~~e 127 (328)
..-++|+ .|...|.||.|...- ....... ...-.+.+.++.+.... ..+..+.++ |++|.....+.+.+
T Consensus 12 slYiHIP--FC~~~C~YCdF~~~v~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~tiy~G--GGTPSlL~~~~l~~ 87 (399)
T PRK07379 12 SAYLHIP--FCRRRCFYCDFPISVVGDRQRGGTSGLIEEYVEVLCQEIAITPSLGQPLQTVFFG--GGTPSLLPVEQLER 87 (399)
T ss_pred EEEEECC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CCHHHHCCHHHHHH
T ss_conf 4888650--0669288999975176666665405799999999999997314159962189969--95567489999999
Q ss_pred HHHHHCCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-
Q ss_conf 88762136-----88324--1025699999998741576069751343-777732058888989999999999987985-
Q gi|254780485|r 128 MIKGVKSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK- 198 (328)
Q Consensus 128 ~i~~i~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~- 198 (328)
++..+++. ..++. ++++.++++.++.++++|++++.+++++ .+...+.+-..|+.++-.++++.++++|++
T Consensus 88 ll~~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGvQSf~~~~L~~lgR~h~~~~~~~ai~~~~~~gf~n 167 (399)
T PRK07379 88 ILLTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIYQAVADIHQAGIEN 167 (399)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999986899988579998458989999999998569885889702386889998489999999999999999769975
Q ss_pred CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 577078668-9899999999999974088886020541120487412445------687989999999999996868
Q gi|254780485|r 199 VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 199 ~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iAi~RL~lP~ 268 (328)
++.-.|||+ |+|.++....|..+-+++. +.+++-.|.-.|||++... +.|+.++.+.+...+.=+|..
T Consensus 168 iniDLIyGlPgQt~~~~~~~l~~~~~l~p--~hiS~Y~L~~e~~T~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~ 242 (399)
T PRK07379 168 FSLDLISGLPHQTLEDWQASLEAAIAINP--THLSCYDLVLEPVTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (399)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 54553307899889999999999973388--8078888896389779998605888999989999999999999986
No 45
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.57 E-value=6e-13 Score=106.43 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=139.3
Q ss_pred EEECCCCCCCCCCCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHH-CC-----CEEEEEECCCCCCCCCCHHHH
Q ss_conf 4530786834232124335477------75641000685799999999996-49-----838997303688874428999
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNK------SKLKASKLINVDQVLKEAKNAKE-NG-----ATRYCMGAAWREPKERDLSII 125 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~------~~~~~~~~~~~Eei~~~a~~~~~-~G-----~~~~~l~~~~~~~~~~~~~~~ 125 (328)
++|+ .|...|.||+|..... .....| .+.+.++.+...+ .+ +..+.++ |++|.....+.+
T Consensus 7 iHiP--FC~~~C~yC~f~~~~~~~~~~~~~~~~Y----~~~L~~Ei~~~~~~l~~~~~~i~tiy~G--GGTPs~L~~~~l 78 (376)
T PRK05628 7 VHVP--FCATRCGYCDFNTYTAAELGGGASPDGY----LDALRAELELAAAVLGDPAPPVSTVFVG--GGTPSLLGAEGL 78 (376)
T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEEC--CCHHHHCCHHHH
T ss_conf 8705--7646089997957336524787679999----9999999999987617789657899978--944664899999
Q ss_pred HHHHHHHCCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9988762136-----88324--1025699999998741576069751343-77773205888898999999999998798
Q gi|254780485|r 126 VDMIKGVKSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI 197 (328)
Q Consensus 126 ~e~i~~i~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~ 197 (328)
.+++..+++. +.++. ++++.++.+.++.|+++|++++.+++++ .+...+.+...|+.++-.++++.+++.|+
T Consensus 79 ~~l~~~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGvQsf~~~~l~~lgR~h~~~~~~~~~~~~~~~gf 158 (376)
T PRK05628 79 ARVLDAVRDTFGLAPDAEVTTEANPESTSPEFFAALRAAGYTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGF 158 (376)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999758999885699983426589999999997498759995155899999974999998999999999987599
Q ss_pred C-CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 5-577078668-9899999999999974088886020541120487412445------687989999999999996868
Q gi|254780485|r 198 K-VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 198 ~-~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iAi~RL~lP~ 268 (328)
. ++.-+|||+ ++|.++..+.+..+-++.. +.+++-.+.-.|+|++... +.++.++...+...+.-.|..
T Consensus 159 ~~in~DLIyGlP~Qt~~~~~~~l~~~~~l~p--~his~Y~l~~e~~t~~~~~~~~~~l~~p~e~~~~~~~~~~~~~L~~ 235 (376)
T PRK05628 159 EHVNLDLIYGTPGETDDDLRRSLDAALEAGV--DHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSA 235 (376)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7255554427999999999999999973289--8156655565478677777751789999999999999999999984
No 46
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=99.57 E-value=6.4e-13 Score=106.26 Aligned_cols=205 Identities=14% Similarity=0.196 Sum_probs=139.1
Q ss_pred EEECCCCCCCCCCCCCCCCCCC-CC--CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 4530786834232124335477-75--64100068579999999999649838997303688874428999998876213
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNK-SK--LKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~-~~--~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328)
++|+ .|...|.||+|..... .. ..+|...-..|+...+......-+..+.+ ||++|.....+.+.+++..+++
T Consensus 11 iHiP--FC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~ei~~~~~~~~~~~i~tiy~--GGGTPs~L~~~~l~~l~~~i~~ 86 (378)
T PRK05660 11 IHIP--WCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFI--GGGTPSLFSAEAIQRLLDGVRA 86 (378)
T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CCCHHHHCCHHHHHHHHHHHHH
T ss_conf 9727--89876999969650488877699999999999999877617975769997--8953330899999999999998
Q ss_pred C-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEE
Q ss_conf 6-----88324--1025699999998741576069751343-777732058888989999999999987985-5770786
Q gi|254780485|r 135 L-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGGIL 205 (328)
Q Consensus 135 ~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~l~ 205 (328)
. +.++. +++..++.+.++.++++|++++.++++| .+...+.+-..|+.++-+++++.++++|++ ++.-.||
T Consensus 87 ~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~iniDLiy 166 (378)
T PRK05660 87 RLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFNLDLMH 166 (378)
T ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 57987771489845705330889999998098759996143789999982799999999999999997699606542326
Q ss_pred CC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHCCC
Q ss_conf 68-989999999999997408888602054112048741244568--7989999999999996868
Q gi|254780485|r 206 GL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK--VDPIEHVRIISVARILMPK 268 (328)
Q Consensus 206 G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~--~~~~e~lr~iAi~RL~lP~ 268 (328)
|+ |+|.++..+.+..+-+++. +.|++-.+.-.|+|++...++ ++.++...+...++=.|..
T Consensus 167 GlP~Qt~~~~~~~l~~~~~l~p--~his~Y~L~~e~~T~~~~~~~~lp~~~~~~~my~~~~~~L~~ 230 (378)
T PRK05660 167 GLPDQSLEEALDDLRQAIALNP--PHLSWYQLTIEPNTVFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred CCCCCCHHHHHHHHHHHHCCCC--CCEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8999889999999999864498--805788888658973764676699858999999999999997
No 47
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.57 E-value=3.1e-13 Score=108.40 Aligned_cols=203 Identities=15% Similarity=0.265 Sum_probs=138.8
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHH----C--CCEEEEEECCCCCCCCCCHHHH
Q ss_conf 99864530786834232124335477--75641000685799999999996----4--9838997303688874428999
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNK--SKLKASKLINVDQVLKEAKNAKE----N--GATRYCMGAAWREPKERDLSII 125 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~--~~~~~~~~~~~Eei~~~a~~~~~----~--G~~~~~l~~~~~~~~~~~~~~~ 125 (328)
+..+|- .|...|.||+|..... .....| .+.+.++.+...+ . .+..+.+++| +|.....+.+
T Consensus 59 LYiHIP----FC~~~C~yC~F~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~~i~tvy~GGG--TPs~L~~~~l 128 (447)
T PRK09058 59 LYIHIP----FCRTHCTFCGFFQNAWNPELVARY----TDALIRELAMEADSPLTQSAPIHAVYFGGG--TPTALSADDL 128 (447)
T ss_pred EEEECC----CCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHCCCCCCCCEEEEEEEECC--HHHHCCHHHH
T ss_conf 999825----415868999884848881209999----999999999985410126981689998086--3474899999
Q ss_pred HHHHHHHCC-----CCCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 998876213-----6883241--025699999998741576069751343-77773205888898999999999998798
Q gi|254780485|r 126 VDMIKGVKS-----LGLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI 197 (328)
Q Consensus 126 ~e~i~~i~~-----~~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~ 197 (328)
.+++..+++ .+.++.+ ++..++++.+..++++|++++.+++.+ +++..+.+...|+.++-++.++.+++.|+
T Consensus 129 ~~l~~~i~~~f~l~~d~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~vlk~lgR~h~~~~~~~~l~~l~~~g~ 208 (447)
T PRK09058 129 ARLIEALREYLPLAPDCEITLEGRINGFDDEKIDAALDAGANRFSFGVQSFNTQVRRRAGRKDDREEVLAFLEELVARDR 208 (447)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999768998884698833878799999999996499805772544888899864799999999999999997499
Q ss_pred -CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------C-CCCHHHHHHHHHHHHHHCCC
Q ss_conf -5577078668-9899999999999974088886020541120487412445------6-87989999999999996868
Q gi|254780485|r 198 -KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------K-KVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 198 -~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~-~~~~~e~lr~iAi~RL~lP~ 268 (328)
.++.-+|||+ |+|.++..+.|..+-+++. +.|++-.+...|+|++... + +++.++...+...+.=.|..
T Consensus 209 ~~iniDLIyGlPgQT~e~~~~dl~~~~~l~p--~his~Y~L~~~~~t~~~~~~~~g~l~~~~d~~~~~~my~~a~~~L~~ 286 (447)
T PRK09058 209 AAVVCDLIFGLPGQTPEIWQQDLAIVRDLGL--DGVDLYALNVLPGTPLAKAVEKGKLPPPATPAEQADMYAYGVEFLAQ 286 (447)
T ss_pred CCEEEHHHCCCCCCCHHHHHHHHHHHHCCCC--CEEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 6376476427988999999999999964599--86887654504897799998749999985999999999999999997
No 48
>pfam04055 Radical_SAM Radical SAM superfamily. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation.
Probab=99.57 E-value=1.5e-13 Score=110.46 Aligned_cols=158 Identities=25% Similarity=0.362 Sum_probs=112.3
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-HHHHHHHHHHC--CC
Q ss_conf 5307868342321243354777564100068579999999999649838997303688874428-99999887621--36
Q gi|254780485|r 59 NIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL-SIIVDMIKGVK--SL 135 (328)
Q Consensus 59 n~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~-~~~~e~i~~i~--~~ 135 (328)
.+ |..|..+|.||.++... ........+.|++.+.++...+.|...+.+. ++.+...... ..+..+..... ..
T Consensus 2 ~~-~~gC~~~C~fC~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~-gg~p~~~~~~~~~~~~~~~~~~~~~~ 77 (165)
T pfam04055 2 II-TPGCNLRCTYCAFPSIR--ARGKGRELSPEEILEEAKELARLGVEVVILT-GGEPLLLPDLVELLERLLKLEELEGI 77 (165)
T ss_pred EE-CCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 88-93748779689997857--8886522699999999988874598599993-16766652777778887653146764
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC-HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHH
Q ss_conf 8832410256999999987415760697513437-77732058888989999999999987985577078668-989999
Q gi|254780485|r 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDD 213 (328)
Q Consensus 136 ~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~-~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~ee 213 (328)
...+..+.+..+++.++.|+++|.+.+.+.+|+. +...+...++++++++++.++.+++.|+.+..++++|+ +|+.++
T Consensus 78 ~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gi~~~~~~i~~~~~e~~~~ 157 (165)
T pfam04055 78 RITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDED 157 (165)
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHH
T ss_conf 89999851433104568999719852224635599999998579999899999999999879978899999799999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780485|r 214 RIDMLLT 220 (328)
Q Consensus 214 ri~~l~~ 220 (328)
..+.+..
T Consensus 158 ~~~~~~~ 164 (165)
T pfam04055 158 LEETLEL 164 (165)
T ss_pred HHHHHHH
T ss_conf 9999603
No 49
>PRK08807 consensus
Probab=99.56 E-value=6e-13 Score=106.44 Aligned_cols=195 Identities=13% Similarity=0.153 Sum_probs=133.3
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHH----HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC--
Q ss_conf 6834232124335477756---41000685799999999----99649838997303688874428999998876213--
Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKL---KASKLINVDQVLKEAKN----AKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-- 134 (328)
Q Consensus 64 ~C~~~C~fCaf~~~~~~~~---~~~~~~~~Eei~~~a~~----~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-- 134 (328)
.|...|.||.|........ ..|. +.++++.+. ....-+..+.++ |+.|.....+.+..++..++.
T Consensus 17 FC~~~C~YCdf~s~~~~~~~~~~~y~----~~l~~ei~~~~~~~~~~~~~tiy~G--GGTPs~L~~~~l~~ll~~i~~~~ 90 (385)
T PRK08807 17 WCVRKCPYCDFNSHAAKGALPFDAYV----DALIRDLDADLPLVWGRVVHSVFFG--GGTPSLFPPEAIDRFLQAAAARL 90 (385)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHCCCCEEEEEEEC--CCHHHHCCHHHHHHHHHHHHHHC
T ss_conf 88885899989441078987699999----9999999974455069844389979--95557379999999999999966
Q ss_pred ---CCCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEECC
Q ss_conf ---688324--1025699999998741576069751343-777732058888989999999999987985-577078668
Q gi|254780485|r 135 ---LGLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGGILGL 207 (328)
Q Consensus 135 ---~~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~l~G~ 207 (328)
.+.++. ++++.++.+.+..|+++|++++.++++| .+...+.+...|+.++-.++++.++++|++ ++.-+|||+
T Consensus 91 ~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvnRlSlGvQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~gf~nin~DLiygl 170 (385)
T PRK08807 91 RFAPNLEITLETNPGTAEHGRFDHYRAAGVNRLSFGVQSFDDVALQRLGRIHDSAEAERAIKLAQDAGYDNFNIDLMYAL 170 (385)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECC
T ss_conf 97767169995272101088999998569875887415589999998489998999999999999749973130103269
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC---CCHHHHHHHHHHHHHHC
Q ss_conf -989999999999997408888602054112048741244568---79899999999999968
Q gi|254780485|r 208 -GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK---VDPIEHVRIISVARILM 266 (328)
Q Consensus 208 -gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~---~~~~e~lr~iAi~RL~l 266 (328)
|+|.++..+.+..+-+++. +.+++-.+.-.|||++..... +++++...+...+.=.|
T Consensus 171 P~Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~ie~~t~~~~~~~~~lp~~d~~~~~~~~~~~~L 231 (385)
T PRK08807 171 PEQTLLQAEHDLERAFALQP--THLSHYQLTLEPNTVFFARPPQGIPDDDAAWDMQEHCQRLL 231 (385)
T ss_pred CCCCHHHHHHHHHHHHCCCC--CEEEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99989999999999855599--84789888851783575454225996789999999999999
No 50
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.56 E-value=1.2e-12 Score=104.54 Aligned_cols=191 Identities=21% Similarity=0.339 Sum_probs=133.5
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE----CCCCCCCCCCHHHHHH---
Q ss_conf 986453078683423212433547775641000685799999999996498389973----0368887442899999---
Q gi|254780485|r 55 SKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMG----AAWREPKERDLSIIVD--- 127 (328)
Q Consensus 55 ~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~----~~~~~~~~~~~~~~~e--- 127 (328)
...+.+ |-.|+.+|.||+.+... .+...+.+.+.++++...+.|..++... .....+.. ..++..+
T Consensus 199 ~~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~ 271 (490)
T COG1032 199 AFSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPAL-NDEKRFELLS 271 (490)
T ss_pred EEEEEE-ECCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCC-CHHHHHHHHH
T ss_conf 699999-78888899888886114-----6005788999999999999873214502355774478543-4167888879
Q ss_pred --HHHHHCCCCCCEE-----EECCCCC-HHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHH-HHHHHHHCCC
Q ss_conf --8876213688324-----1025699-999998741576069751343-7777320588889899999-9999998798
Q gi|254780485|r 128 --MIKGVKSLGLETC-----MTLGMLS-FEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQ-TLENVRKSGI 197 (328)
Q Consensus 128 --~i~~i~~~~~~i~-----~~~g~~~-~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~-~~~~a~~~G~ 197 (328)
+++........++ +.+...+ ++....++++|...+.+.+|| +++..+.+.+.++.++-++ .++.+.+.|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~ 351 (490)
T COG1032 272 LELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGL 351 (490)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99998630467603575230033437879999998764943699965899999999861478868889999999986798
Q ss_pred CCCCEEEECC-CCCHHHHHHH---HHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHH
Q ss_conf 5577078668-9899999999---999974088886020541120487412445687989
Q gi|254780485|r 198 KVCCGGILGL-GEMIDDRIDM---LLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPI 253 (328)
Q Consensus 198 ~~~sg~l~G~-gEt~eeri~~---l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~ 253 (328)
.+..++|+|+ |||.++.... +..+++++.. ..+..++|+|.|+|++.........
T Consensus 352 ~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~-~~~~~~~~~p~p~t~~~~~~~~~~~ 410 (490)
T COG1032 352 RVKLYFIVGLPGETEEDVKETIELAKFIKKLGPK-LYVSPSPFVPLPGTPLQEMPKLENE 410 (490)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEECCCCCHHHCCCCCCH
T ss_conf 6179999827999979999999999999871867-4588764164698841322453201
No 51
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.55 E-value=1.1e-12 Score=104.57 Aligned_cols=207 Identities=17% Similarity=0.191 Sum_probs=143.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCH
Q ss_conf 98569998645307868342321243354777--564100068579999999999----649838997303688874428
Q gi|254780485|r 49 PNHIQLSKLLNIKTGGCPENCGYCNQSVHNKS--KLKASKLINVDQVLKEAKNAK----ENGATRYCMGAAWREPKERDL 122 (328)
Q Consensus 49 g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~--~~~~~~~~~~Eei~~~a~~~~----~~G~~~~~l~~~~~~~~~~~~ 122 (328)
.|.+.+..+|- .|...|.||.|...... ....|. +.+.++.+... ..-+..+.+++ ++|.....
T Consensus 9 ~~~lsLYiHIP----FC~~~C~yC~f~~~~~~~~~~~~y~----~~l~~Ei~~~~~~~~~~~i~tiy~GG--GTPs~L~~ 78 (390)
T PRK06582 9 ANDLSIYIHWP----FCLSKCPYCDFNSHVASTIDHNQWL----KSYEKEIEYFKDIIQNKYIKSIFFGG--GTPSLMNP 78 (390)
T ss_pred CCCEEEEEEEC----CCCCCCCCCCCCCEECCCCCHHHHH----HHHHHHHHHHHHHCCCCEEEEEEECC--CHHHHCCH
T ss_conf 77749999838----9988089993907148858899999----99999999988764798057999898--51352899
Q ss_pred HHHHHHHHHHCCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999988762136-----88324--1025699999998741576069751343-77773205888898999999999998
Q gi|254780485|r 123 SIIVDMIKGVKSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRK 194 (328)
Q Consensus 123 ~~~~e~i~~i~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328)
+.+..++..++.. ..++. ++++.++.+.++.|+++|++++.+++.+ .++..+.+...|+.++.+++++.|++
T Consensus 79 ~~l~~l~~~l~~~~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQsf~~~~L~~lgR~h~~~~~~~~i~~~~~ 158 (390)
T PRK06582 79 VIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANT 158 (390)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999857888873489984432061989999985598679997133898999971899889999999999987
Q ss_pred CCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7985577078668-989999999999997408888602054112048741244------568798999999999999686
Q gi|254780485|r 195 SGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE------NKKVDPIEHVRIISVARILMP 267 (328)
Q Consensus 195 ~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~------~~~~~~~e~lr~iAi~RL~lP 267 (328)
..-.++.-.|||+ ++|.++..+.|..+-+++. +.+++..+.-.++||+.. ...|++++...+...+.=.|.
T Consensus 159 ~f~niniDLI~GlP~QT~~~~~~~L~~~~~l~p--~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~~y~~~~~~L~ 236 (390)
T PRK06582 159 IFPRVSFDLIYARSGQTLKDWQEELKQAMQLAT--SHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLE 236 (390)
T ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 463354454147999989999999999983389--851789888537977888874189899988999999999999998
No 52
>PRK08949 consensus
Probab=99.54 E-value=1.3e-12 Score=104.25 Aligned_cols=199 Identities=17% Similarity=0.273 Sum_probs=135.6
Q ss_pred EEECCCCCCCCCCCCCCCCCC-CCCC--CCCCCCCHHHHHHHHHH----HHHCCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 453078683423212433547-7756--41000685799999999----9964983899730368887442899999887
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN-KSKL--KASKLINVDQVLKEAKN----AKENGATRYCMGAAWREPKERDLSIIVDMIK 130 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~-~~~~--~~~~~~~~Eei~~~a~~----~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~ 130 (328)
++|+ .|...|.||.|.... +... ..|. +.++++.+. ....-+..+.+++ ++|.....+.+..++.
T Consensus 11 iHIP--FC~~~C~YCdf~s~~~~~~~~~~~Y~----~aL~~El~~~~~~~~~~~~~tiy~GG--GTPs~L~~~~l~~ll~ 82 (378)
T PRK08949 11 IHIP--WCVQKCPYCDFNSHALKGEVPHQDYV----QHLLADLDADVAYAQGRELHTIFIGG--GTPSLLSAEAMQTLLD 82 (378)
T ss_pred EEEC--CCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHCCCCEEEEEEEEC--CHHHHCCHHHHHHHHH
T ss_conf 9808--87671899999863288887599999----99999999865650797687999728--2320079999999999
Q ss_pred HHCC-----CCCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 6213-----688324--1025699999998741576069751343-777732058888989999999999987985-577
Q gi|254780485|r 131 GVKS-----LGLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCC 201 (328)
Q Consensus 131 ~i~~-----~~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~s 201 (328)
.+++ .+.++. ++++.++.+.+..++++|++++.++++| .+...+.+...|+.++-+++++.++++|+. ++.
T Consensus 83 ~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~L~~lgR~h~~~~~~~a~~~~~~~gf~~ini 162 (378)
T PRK08949 83 GVRARLPFAADAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNL 162 (378)
T ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99986798767058995582523188999999719866999503489899998379999999999999998659962502
Q ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC--CHHHHHHHHHHHHHHC
Q ss_conf 078668-9899999999999974088886020541120487412445687--9899999999999968
Q gi|254780485|r 202 GGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV--DPIEHVRIISVARILM 266 (328)
Q Consensus 202 g~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~--~~~e~lr~iAi~RL~l 266 (328)
-+|||+ |+|.++..+.|..+-+++. +.+++-.+...|+|++...+.. +.++...+...+.=.|
T Consensus 163 DLiyglP~Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~ie~~t~~~~~~~~lp~~~~~~~~y~~~~~~L 228 (378)
T PRK08949 163 DLMHGLPDQSLEEALDDLRQAIALNP--PHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLL 228 (378)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCC--CEEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 32368999899999999999966699--8378874686489737646778997599999999999999
No 53
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.53 E-value=9.4e-13 Score=105.13 Aligned_cols=202 Identities=12% Similarity=0.161 Sum_probs=135.5
Q ss_pred EEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 453078683423212433547---77564100068579999999999649838997303688874428999998876213
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN---KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~---~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328)
++|+ .|...|.||.|...- ..+..+|...-..|+...+......-+..+.+++ ++|.....+.+..++..++.
T Consensus 9 iHIP--FC~~~C~YCdf~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~i~tiy~GG--GTPs~L~~~~l~~ll~~l~~ 84 (381)
T PRK09057 9 VHWP--FCLAKCPYCDFNSHVRHAPIDQARFAAAFLRELATEAARTGPRTLTSIFFGG--GTPSLMQPETVAALLDAIAR 84 (381)
T ss_pred EEEC--CCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--CHHHCCCHHHHHHHHHHHHH
T ss_conf 9817--8888289994987017887879999999999999999875999357999799--61230999999999999998
Q ss_pred ---C--CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf ---6--88324--1025699999998741576069751343-77773205888898999999999998798557707866
Q gi|254780485|r 135 ---L--GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILG 206 (328)
Q Consensus 135 ---~--~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G 206 (328)
. +.++. ++++.++.+.++.|+++|++++.++++| .+...+.+...|+.++-+++++.+++..-.++.-+|||
T Consensus 85 ~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~f~~in~DLiyG 164 (381)
T PRK09057 85 LWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYA 164 (381)
T ss_pred HCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 67986572367723742201679999997098769896234999999973899989999999999998654512066427
Q ss_pred C-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHH
Q ss_conf 8-9899999999999974088886020541120487412445------687989999999999996
Q gi|254780485|r 207 L-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIISVARIL 265 (328)
Q Consensus 207 ~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iAi~RL~ 265 (328)
+ |+|.++..+.+..+-+++. +.|++..+...|||++... ..|++++...+...+.=+
T Consensus 165 lPgQt~~~~~~~l~~~~~l~p--~hiS~Y~L~~e~~t~~~~~~~~g~~~~p~~d~~~~~y~~~~~~ 228 (381)
T PRK09057 165 RPGQTLAAWRAELKEALGLAA--DHLSLYQLTIEEGTAFYGLHAAGKLTLPDEDLAADLYELTQEV 228 (381)
T ss_pred CCCCCHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 988988899999999971277--7432235664489727878755888999999999999999999
No 54
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.53 E-value=7.6e-12 Score=99.04 Aligned_cols=232 Identities=19% Similarity=0.299 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHCCCCEEE-EEEEEEECCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-C
Q ss_conf 9999999988862898569-99864530786834--------232124335477756410006857999999999964-9
Q gi|254780485|r 35 LLFWSHTVHRKNFEPNHIQ-LSKLLNIKTGGCPE--------NCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN-G 104 (328)
Q Consensus 35 l~~~Aa~~~r~~~~g~~V~-~~~~in~~TN~C~~--------~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~-G 104 (328)
+...-.+..|++| |.+|+ +..+..| -|+| +|.||+-+......... ...-.+++.+.++..++. +
T Consensus 7 ~y~t~~~~lr~~f-g~Kv~Kv~ld~GF---~CPNRDGti~rGGCtFC~~~g~~d~~~~~-~~~i~~Q~~~q~~~~~kK~~ 81 (312)
T COG1242 7 LYYTLNDYLREKF-GEKVFKVTLDGGF---SCPNRDGTIGRGGCTFCSVAGSGDFAGQP-KISIAEQFKEQAERMHKKWK 81 (312)
T ss_pred HHHHHHHHHHHHH-CCEEEEEECCCCC---CCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHC
T ss_conf 7999999999983-8716998535777---89999996267864650677887634586-67789999999999987515
Q ss_pred -CE-EEEEECCCCCCCCCCHHHHHHHHHHHCCC----CCCEEEECCCCCHHHHHHHHCCCCC---EEEEECCC-CHHHHH
Q ss_conf -83-89973036888744289999988762136----8832410256999999987415760---69751343-777732
Q gi|254780485|r 105 -AT-RYCMGAAWREPKERDLSIIVDMIKGVKSL----GLETCMTLGMLSFEQAQILSKAGLD---YYNHNIDT-SERFYP 174 (328)
Q Consensus 105 -~~-~~~l~~~~~~~~~~~~~~~~e~i~~i~~~----~~~i~~~~g~~~~~~~~~Lk~aG~~---~~~~~let-~~~~~~ 174 (328)
.+ -.-+|...+. .-+++.+-++....-+. ++.|..-+..+.++.+..|.+..-. .+.+++.| ..+..+
T Consensus 82 ~~kyiaYFQ~~TNT--yApvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk 159 (312)
T COG1242 82 RGKYIAYFQAYTNT--YAPVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLK 159 (312)
T ss_pred CCCEEEEEECCCCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHH
T ss_conf 78679998146666--6759999999999727588047750589988818999999998644578877453055589999
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC------C
Q ss_conf 058888989999999999987985577078668-989999999999997408888602054112048741244------5
Q gi|254780485|r 175 HVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE------N 247 (328)
Q Consensus 175 ~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~------~ 247 (328)
.+-..|+++...++.+.+++.||++|+++|+|+ ||++++.++.+..+.+++. ++|-+-+++-.+||+|+. .
T Consensus 160 ~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v--~GIKlH~LhvvkgT~m~k~Y~~G~l 237 (312)
T COG1242 160 RINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGV--DGIKLHPLHVVKGTPMEKMYEKGRL 237 (312)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEEEEEECCCHHHHHHHCCCC
T ss_conf 87624544999999999997497498888407988888999999999986687--5388887888638759999971886
Q ss_pred CCCCHHHHHHHHH-HHHHHCCCCCCE-EEE
Q ss_conf 6879899999999-999968687214-231
Q gi|254780485|r 248 KKVDPIEHVRIIS-VARILMPKSRLR-LAA 275 (328)
Q Consensus 248 ~~~~~~e~lr~iA-i~RL~lP~~~i~-i~~ 275 (328)
..+|.+||..+++ ..+.+=|++.|+ |++
T Consensus 238 ~~ls~eeYv~~~~d~le~lpp~vviHRitg 267 (312)
T COG1242 238 KFLSLEEYVELVCDQLEHLPPEVVIHRITG 267 (312)
T ss_pred EECCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 554599999999999974893269997037
No 55
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.53 E-value=1.1e-12 Score=104.77 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=136.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCC--CCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 4530786834232124335477--75641000-68579999999999649838997303688874428999998876213
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNK--SKLKASKL-INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~--~~~~~~~~-~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328)
++|+ .|...|.||.|..... .....|.. +-.|++...+.......+..+.++ |++|.....+.+.+++..++.
T Consensus 11 iHIP--FC~~~C~yC~f~~~~~~~~~~~~Y~~al~~e~~~~~~~~~~~~~~~tiy~G--GGTPs~L~~~~L~~ll~~i~~ 86 (374)
T PRK06294 11 IHIP--FCSKKCHYCSFYTIPYKEESVSLYCNAVIKEGLKKLAPLRCTHFIDTVFFG--GGTPSLVPPDLIQDILKTLEA 86 (374)
T ss_pred EECC--CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC--CCHHHHCCHHHHHHHHHHHCC
T ss_conf 8627--899879999881024882339999999999999997643489817999978--970163889999999997401
Q ss_pred C-CCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECC-C
Q ss_conf 6-8832--41025699999998741576069751343-77773205888898999999999998798-5577078668-9
Q gi|254780485|r 135 L-GLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGILGL-G 208 (328)
Q Consensus 135 ~-~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~-g 208 (328)
. ..++ -++++.++.+.++.|++.|++++.+++++ .++..+.+...|+.++-.++++.++++|+ .++.-+|||+ |
T Consensus 87 ~~~~E~TiE~nP~~~~~~~l~~l~~~GinRlSlGVQsf~d~~l~~lgR~h~~~~~~~~i~~~~~~gf~~iniDLIyGlPg 166 (374)
T PRK06294 87 PHATEITLEANPENLSFSYLRALAQTPINRISIGVQTFDDPLLKLLGRTHSSSAAIEAVLECYEHGFSNLSIDLIYGLPT 166 (374)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 68843899853476999999999972987598972107678898738999999999999999975997433211047888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCC------CCCHHHHHHHHHHHHHHC
Q ss_conf 8999999999999740888860205411204874124456------879899999999999968
Q gi|254780485|r 209 EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENK------KVDPIEHVRIISVARILM 266 (328)
Q Consensus 209 Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~------~~~~~e~lr~iAi~RL~l 266 (328)
+|.++....+..+-+++. +.+++..+.-.|+|++.... .++.++...+...++=.|
T Consensus 167 Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~iep~t~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L 228 (374)
T PRK06294 167 QSLSDFIMDLHQALTLPI--THISLYNLTIDPHTSFYKHRKILLPSIADEDILAEMSLAAEELL 228 (374)
T ss_pred CCHHHHHHHHHHHHHCCC--CEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 888999999999973496--74555555765896588861338999989999999999999999
No 56
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.52 E-value=1.7e-12 Score=103.37 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=130.5
Q ss_pred CCCCCCCCCCCCCCC-CCCC-CCCCCCCHHHHHHHHHHH-H----HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC--
Q ss_conf 683423212433547-7756-410006857999999999-9----649838997303688874428999998876213--
Q gi|254780485|r 64 GCPENCGYCNQSVHN-KSKL-KASKLINVDQVLKEAKNA-K----ENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-- 134 (328)
Q Consensus 64 ~C~~~C~fCaf~~~~-~~~~-~~~~~~~~Eei~~~a~~~-~----~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-- 134 (328)
.|...|.||.|.... +... ..| .+.+.++.+.. . ...+..+.++ |++|...+.+.+..++..+++
T Consensus 9 FC~~~C~YCdF~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~i~tiy~G--GGTPS~l~~~~l~~ll~~l~~~~ 82 (351)
T PRK08446 9 FCESKCGYCAFNSYEDKFDLKEEY----FQALCLDLKFQLKQFIQDEKIESVFIG--GGTPSTVSAKLYEPIFEIIYPYL 82 (351)
T ss_pred CCCCCCCCCCCCCEECCCCCHHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEC--CCHHHHCCHHHHHHHHHHHHHHC
T ss_conf 838808999792851795679999----999999999998762689936699968--97456379999999999999766
Q ss_pred -CCCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEECC-C
Q ss_conf -688324--1025699999998741576069751343-777732058888989999999999987985-577078668-9
Q gi|254780485|r 135 -LGLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGGILGL-G 208 (328)
Q Consensus 135 -~~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~l~G~-g 208 (328)
.+.++. ++++.++.+.++.++++|++++.++++| .++..+.+...|+.++-+++++.|+++|++ ++.-.|||+ +
T Consensus 83 ~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~d~~Lk~lgR~H~~~~~~~ai~~~r~~gf~niniDLIyGlP~ 162 (351)
T PRK08446 83 SKDCEITTEANPNSATLAWLKGMKNLGVNRISFGVQSFHEDKLKFLGRIHSKNQIIKAIENAKKAGFKNISIDLIYNTKL 162 (351)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHHCCCCC
T ss_conf 98835999767686899999999864987699973137689999818998899999999999984996342255317999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC
Q ss_conf 899999999999974088886020541120487412445687
Q gi|254780485|r 209 EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV 250 (328)
Q Consensus 209 Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~ 250 (328)
+|.++..+.+..+-+++ ++.+++-.+...+||++......
T Consensus 163 Qt~e~~~~~l~~~~~l~--p~HiS~Y~L~ie~~T~~~~~~~~ 202 (351)
T PRK08446 163 DNKKLLKEELKLAKELP--ITHLSAYALTIEENTPFEEKNAK 202 (351)
T ss_pred CCHHHHHHHHHHHHCCC--CCEEECCCCEECCCCHHHHCCCC
T ss_conf 99999999999997489--69797423044699823325678
No 57
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.49 E-value=1.1e-11 Score=97.86 Aligned_cols=206 Identities=15% Similarity=0.211 Sum_probs=135.0
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCC-CC--CCCCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCC
Q ss_conf 985699986453078683423212433547-77--5641000685799999999996-----498389973036888744
Q gi|254780485|r 49 PNHIQLSKLLNIKTGGCPENCGYCNQSVHN-KS--KLKASKLINVDQVLKEAKNAKE-----NGATRYCMGAAWREPKER 120 (328)
Q Consensus 49 g~~V~~~~~in~~TN~C~~~C~fCaf~~~~-~~--~~~~~~~~~~Eei~~~a~~~~~-----~G~~~~~l~~~~~~~~~~ 120 (328)
+..+.+..+|- .|...|.||+|.... .. ....|. +.+.++.+.... .-+..+.++ |++|...
T Consensus 48 ~~plsLYiHIP----FC~~~C~YC~f~~~~~~~~~~~~~Yl----~~L~~Ei~~~~~~~~~~~~v~ti~~G--GGTPs~L 117 (453)
T PRK13347 48 EEPVSLYLHVP----FCRSLCWFCGCNTIITQRDAPVEAYV----AALIREIRLVAALLPQRRRVSQLHWG--GGTPTIL 117 (453)
T ss_pred CCCEEEEEECC----CCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHCCCCEEEEEEEC--CCCHHHC
T ss_conf 99869998527----71680899989733778866799999----99999999988762789807899978--8482859
Q ss_pred CHHHHHHHHHHHCC---C--CCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 28999998876213---6--883241--025699999998741576069751343-777732058888989999999999
Q gi|254780485|r 121 DLSIIVDMIKGVKS---L--GLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENV 192 (328)
Q Consensus 121 ~~~~~~e~i~~i~~---~--~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a 192 (328)
..+.+.+++..+++ . +.++.+ +++.++.+.++.|+++|++++.+++.+ .+...+.+...|+.++-.++++.|
T Consensus 118 ~~~~l~~ll~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~a 197 (453)
T PRK13347 118 NPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELL 197 (453)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999997589999966999867786899999999864986588713457878999825989999999999999
Q ss_pred HHCCCC-CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 987985-577078668-989999999999997408888602054112048741-----2445687989999999999996
Q gi|254780485|r 193 RKSGIK-VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK-----FEENKKVDPIEHVRIISVARIL 265 (328)
Q Consensus 193 ~~~G~~-~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~-----l~~~~~~~~~e~lr~iAi~RL~ 265 (328)
+++|++ ++.-.|||+ ++|.++..+.|..+-+|+. +.|++..+...|++. .....-|++++.+.+...++=.
T Consensus 198 r~~Gf~~iniDLIyGlP~QT~~~~~~tL~~~~~l~p--dhiS~Y~l~~~p~~~~~qr~i~~~~LP~~~~~~~m~~~a~~~ 275 (453)
T PRK13347 198 RAAGFESINFDLIYGLPHQTVESFRETLDKVIALSP--DRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAAADR 275 (453)
T ss_pred HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 981898655555524899989999999999983199--978852320265323565325767895999999999999999
Q ss_pred C
Q ss_conf 8
Q gi|254780485|r 266 M 266 (328)
Q Consensus 266 l 266 (328)
|
T Consensus 276 L 276 (453)
T PRK13347 276 L 276 (453)
T ss_pred H
T ss_conf 9
No 58
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=99.48 E-value=1.5e-11 Score=97.12 Aligned_cols=189 Identities=16% Similarity=0.306 Sum_probs=136.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC----C-CCCCC--CC-HHHH
Q ss_conf 998645307868342321243354777564100068579999999999649838997303----6-88874--42-8999
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAA----W-REPKE--RD-LSII 125 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~----~-~~~~~--~~-~~~~ 125 (328)
+...++| ..+|.+.|+||.-.. -++ . ..-.+.|.|+++++.+.++|.+++.|.+. . +.+.. .. +..+
T Consensus 153 ~~a~~~I-~~GC~~~CtyCivP~-~RG--~-~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~~~~~La~L 227 (455)
T TIGR00089 153 TRAFVKI-QEGCDKFCTYCIVPY-TRG--R-ERSRPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEGKTNSLADL 227 (455)
T ss_pred EEEEEEE-CCCCCCCCCEEEECC-CCC--E-ECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 3899984-026586977688134-266--0-0135889999999999846980999998852562477888897647999
Q ss_pred HHHHHH-HCCC-CCC-EEEECCCCCHHHHHHHHCC--C--CCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--
Q ss_conf 998876-2136-883-2410256999999987415--7--6069751343-777732058888989999999999987--
Q gi|254780485|r 126 VDMIKG-VKSL-GLE-TCMTLGMLSFEQAQILSKA--G--LDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS-- 195 (328)
Q Consensus 126 ~e~i~~-i~~~-~~~-i~~~~g~~~~~~~~~Lk~a--G--~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~-- 195 (328)
++.+.. |... -+. ...++-.++++-...+.+. . ...+++-+.+ +.+..+....+++-++.++.++..++.
T Consensus 228 L~~l~~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r~~~P 307 (455)
T TIGR00089 228 LRELSKKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLRAKVP 307 (455)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99984005970268860467032687899999850788535202212661886999703789888999999999998478
Q ss_pred CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf 985577078668-989999999999997408888602054112048741244568
Q gi|254780485|r 196 GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328)
Q Consensus 196 G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328)
.+-.+|.+|+|+ |||.||--+.+..+++++. +.+.++.+-|-||||=.....
T Consensus 308 ~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F--~~~~~F~YSpR~gTpAa~~~d 360 (455)
T TIGR00089 308 DAAITTDIIVGFPGETEEDFEETLDLVEEVKF--DKLHSFIYSPRPGTPAADMKD 360 (455)
T ss_pred CCEEECCEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCC
T ss_conf 81775026882899988999999999852384--434312057888874635678
No 59
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.48 E-value=5.7e-12 Score=99.91 Aligned_cols=196 Identities=14% Similarity=0.168 Sum_probs=132.2
Q ss_pred EEECCCCCCCCCCCCCCCCCC-CCCC---CCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 453078683423212433547-7756---4100068579999999999----6498389973036888744289999988
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN-KSKL---KASKLINVDQVLKEAKNAK----ENGATRYCMGAAWREPKERDLSIIVDMI 129 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~-~~~~---~~~~~~~~Eei~~~a~~~~----~~G~~~~~l~~~~~~~~~~~~~~~~e~i 129 (328)
++|+ .|...|.||.|.... +... ..|. +.+.++.+... ..-+..+.++ |++|.....+.+.+++
T Consensus 24 iHIP--FC~~~C~YC~f~s~~~~~~~~~~~~Y~----~aL~~Ei~~~~~~~~~~~~~tiy~G--GGTPs~L~~~~l~~l~ 95 (393)
T PRK08898 24 VHFP--WCVRKCPYCDFNSHEWKGGGIPEAAYL----DALRADLEQALPLVWGRQVHTVFIG--GGTPSLLSAAGLDRLL 95 (393)
T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHCCCEEEEEEEC--CCHHHHCCHHHHHHHH
T ss_conf 8717--871609999881422787886799999----9999999975777069867799976--8424638999999999
Q ss_pred HHHCC---C--CCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 76213---6--8832--41025699999998741576069751343-777732058888989999999999987985577
Q gi|254780485|r 130 KGVKS---L--GLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCC 201 (328)
Q Consensus 130 ~~i~~---~--~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~s 201 (328)
..++. . ..++ -++++.++.+.++.++++|++++.+++++ .+...+.+...|+.++-.++++.+++..-.++.
T Consensus 96 ~~l~~~f~~~~~~E~tiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~~i~~~~~~f~~ini 175 (393)
T PRK08898 96 SDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNL 175 (393)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 99998589765731688736250609999999854986489952028999999818999999999999999973746672
Q ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC--CCHHHHHHHHHHHH
Q ss_conf 078668-989999999999997408888602054112048741244568--79899999999999
Q gi|254780485|r 202 GGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK--VDPIEHVRIISVAR 263 (328)
Q Consensus 202 g~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~--~~~~e~lr~iAi~R 263 (328)
-+|||+ |+|.++..+.|..+-+++. +.|++..+...|+|++...+. ++.++.+.+...+.
T Consensus 176 DLiyGlP~Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~iep~T~~~~~~~~lP~~d~~~~m~~~~~ 238 (393)
T PRK08898 176 DLMYALPNQTLDECRADVETALAFGP--PHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIH 238 (393)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCC--CEEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 89835988989999999999862499--9589877776489733215767959899999999999
No 60
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=9.8e-12 Score=98.32 Aligned_cols=188 Identities=15% Similarity=0.265 Sum_probs=131.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC----CCCC---CCCHHHHH
Q ss_conf 9986453078683423212433547775641000685799999999996498389973036----8887---44289999
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW----REPK---ERDLSIIV 126 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~----~~~~---~~~~~~~~ 126 (328)
....+.| ++.|...|+||.---. + .+..-.+.|+|+.+++.+.++|.+++.+.+.. +.+. ...+..++
T Consensus 144 ~~A~v~I-~eGCn~~CtfCiiP~~-R---G~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll 218 (437)
T COG0621 144 VRAFVKI-QEGCNKFCTFCIIPYA-R---GKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLL 218 (437)
T ss_pred EEEEEEH-HCCCCCCCCEEEEECC-C---CCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEHHHCCCCCCCCCCCHHHHH
T ss_conf 4799881-2086788880640536-7---875577989999999999988974999998811010446777766899999
Q ss_pred HHHHHHCCC-CCCE-EEECCCCCHHHHHHHHCC-CC-CEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCC
Q ss_conf 988762136-8832-410256999999987415-76-069751343-777732058888989999999999987--9855
Q gi|254780485|r 127 DMIKGVKSL-GLET-CMTLGMLSFEQAQILSKA-GL-DYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS--GIKV 199 (328)
Q Consensus 127 e~i~~i~~~-~~~i-~~~~g~~~~~~~~~Lk~a-G~-~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~ 199 (328)
+.+..|... -+.+ .+++-..+++-+..+.+. -+ ..+++-+.+ ++...+....+++.++.++.++..++. .+..
T Consensus 219 ~~l~~I~G~~riR~~~~~P~~~~d~lIe~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437)
T COG0621 219 RELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAI 298 (437)
T ss_pred HHHHCCCCCEEEEEECCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99960799108999358800118899999865784143446755569879999737876799999999999986898567
Q ss_pred CCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCC
Q ss_conf 77078668-98999999999999740888860205411204874124456
Q gi|254780485|r 200 CCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENK 248 (328)
Q Consensus 200 ~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~ 248 (328)
++.+|+|+ |||.||--+.+..+++.+. +.+.++.|-|.||||-...+
T Consensus 299 ~tDiIVGFPgETEedFe~tl~lv~e~~f--d~~~~F~YSpRpGTpAa~~~ 346 (437)
T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEVRF--DRLHVFKYSPRPGTPAALMP 346 (437)
T ss_pred ECCEEEECCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCC
T ss_conf 5267997999999999999999997488--87853304899998211377
No 61
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.47 E-value=1.4e-11 Score=97.22 Aligned_cols=204 Identities=16% Similarity=0.212 Sum_probs=131.7
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCC
Q ss_conf 9856999864530786834232124335477---75641000685799999999996-----498389973036888744
Q gi|254780485|r 49 PNHIQLSKLLNIKTGGCPENCGYCNQSVHNK---SKLKASKLINVDQVLKEAKNAKE-----NGATRYCMGAAWREPKER 120 (328)
Q Consensus 49 g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~---~~~~~~~~~~~Eei~~~a~~~~~-----~G~~~~~l~~~~~~~~~~ 120 (328)
+..+.+..+|- .|...|.||+|..... .....| .+.+.++.+.... ..+..+.++ |++|...
T Consensus 49 ~~plSLYiHiP----FC~~~C~YC~~~~~~~~~~~~~~~Y----l~~L~~Ei~~~~~~l~~~~~v~~i~~G--GGTPs~L 118 (456)
T PRK09249 49 GSPLSLYVHIP----FCRSLCYYCGCNKIITRDHEKADPY----LDALEKEIALVAPLLPGGRKVSQLHWG--GGTPTFL 118 (456)
T ss_pred CCCEEEEEECC----CCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEC--CCCHHHC
T ss_conf 99559998517----8168289999801357885579999----999999999988761789836799978--9670649
Q ss_pred CHHHHHHHHHHHCCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 289999988762136-----88324--1025699999998741576069751343-777732058888989999999999
Q gi|254780485|r 121 DLSIIVDMIKGVKSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENV 192 (328)
Q Consensus 121 ~~~~~~e~i~~i~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a 192 (328)
..+.+.+++..++.. +.++. ++++.++.+.++.|+++|++++.+++.+ .+...+.+...|+.++-.++++.|
T Consensus 119 ~~~~l~~l~~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i~~a 198 (456)
T PRK09249 119 SPEQLTRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAINRIQPFELTFALVEAA 198 (456)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999999998668898835999843475879999999845975688605357879999852889999999999999
Q ss_pred HHCCCC-CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC-----CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 987985-577078668-9899999999999974088886020541120487-----41244568798999999999999
Q gi|254780485|r 193 RKSGIK-VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPG-----SKFEENKKVDPIEHVRIISVARI 264 (328)
Q Consensus 193 ~~~G~~-~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g-----t~l~~~~~~~~~e~lr~iAi~RL 264 (328)
+++|+. ++.-.|||+ ++|.++..+.|..+-+|+. +.+++..+.-.|. ..+....-|++++-+.+...+.=
T Consensus 199 r~~Gf~~in~DLIyGLP~QT~~~~~~tl~~~~~l~P--dhis~y~yah~P~~~~~qr~i~~~~LP~~~~~~~m~~~a~~ 275 (456)
T PRK09249 199 RELGFTSINFDLIYGLPKQTPESFARTLEKVLELRP--DRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLEILQAAIE 275 (456)
T ss_pred HHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCC--CEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 981997210488606998769999999999965599--88995022347204556530365679799999999999999
No 62
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.46 E-value=4e-11 Score=94.19 Aligned_cols=174 Identities=17% Similarity=0.266 Sum_probs=123.8
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99864530786834232124335477756410006857999999999964983899730368887442899999887621
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK 133 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~ 133 (328)
+....++ |+-|..+|.||.-..... +...-++.||+++.++++.+.|...+.+ +||++....++ .++++.++
T Consensus 17 ~~v~~el-T~~CNL~C~hCy~~~~~~---~~~~ELs~~e~~~~id~l~~~Gv~~v~~-tGGEPllr~D~---~ei~~~a~ 88 (375)
T PRK05301 17 LWLLAEL-TYRCPLQCPYCSNPLDLA---RHGAELSTAEWIRVLREARALGVLQLHF-SGGEPLLRKDL---EELVAHAR 88 (375)
T ss_pred EEEEEHH-HCHHCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCH---HHHHHHHH
T ss_conf 2843573-140078784669850048---7657899999999999999869988996-18652456689---99999999
Q ss_pred CCCCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 36883241--025699999998741576069751343-7777320588-8898999999999998798557707866898
Q gi|254780485|r 134 SLGLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGE 209 (328)
Q Consensus 134 ~~~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gE 209 (328)
+.++.+.+ |-..++++.+++|+++|++.+.+.+|. .++.+..++. +.+|+.-++.++.+++.|+++...+.+- -+
T Consensus 89 ~~G~~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~-r~ 167 (375)
T PRK05301 89 RLGLYTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIH-RH 167 (375)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC-CC
T ss_conf 76975899606745579999999850998899956779877877763788629999999999997498169998723-05
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCEEE
Q ss_conf 99999999999974088886020541120
Q gi|254780485|r 210 MIDDRIDMLLTLANLSTPPESIPINLLIP 238 (328)
Q Consensus 210 t~eeri~~l~~lr~l~~~~~~v~~~~~~p 238 (328)
+..|.-+.+....+++.. .+.+..+.+
T Consensus 168 N~~~l~~i~~la~~lGv~--~~~l~~~~~ 194 (375)
T PRK05301 168 NIDQIPRIIELAVELGAD--RLELANTQY 194 (375)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEEEEEE
T ss_conf 688899999999972998--289876567
No 63
>KOG2672 consensus
Probab=99.45 E-value=5.3e-12 Score=100.09 Aligned_cols=177 Identities=17% Similarity=0.311 Sum_probs=135.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHH
Q ss_conf 9986453078683423212433547775641000685799999999996498389973036888-744289999988762
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGV 132 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i 132 (328)
.-..|-+--.-|+.+|+||+.-. ++++. .+++-|-...|+++.+.|..-+++.+..+++ ++.--+.+.+.++.|
T Consensus 110 ATATIMlmGDTCTRGCRFCsVKT-sR~Pp----PlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~i 184 (360)
T KOG2672 110 ATATIMLMGDTCTRGCRFCSVKT-SRNPP----PLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKI 184 (360)
T ss_pred EEEEEEEECCCCCCCCCEEEEEC-CCCCC----CCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 36898863474346752012103-78896----77999864489999971888699971145647675227899999999
Q ss_pred CCCCCCEEEECCCC----CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCC-CCCHHHHHHHHHHHHHC--CCCCCCEEEE
Q ss_conf 13688324102569----99999987415760697513437777320588-88989999999999987--9855770786
Q gi|254780485|r 133 KSLGLETCMTLGML----SFEQAQILSKAGLDYYNHNIDTSERFYPHVTT-THTFEDRLQTLENVRKS--GIKVCCGGIL 205 (328)
Q Consensus 133 ~~~~~~i~~~~g~~----~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~-~~~~~~~l~~~~~a~~~--G~~~~sg~l~ 205 (328)
|+..+++.+.+-.. .-+....+...|+|-|.||+||.+++-+.++. ...|.+-|.+++.|++. ++-+.+-||.
T Consensus 185 K~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMl 264 (360)
T KOG2672 185 KEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIML 264 (360)
T ss_pred HHHCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEECCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHH
T ss_conf 85284232132475545734799999853740000111408760233318540167769999987751887012021000
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEECCCEE
Q ss_conf 68989999999999997408888602054112
Q gi|254780485|r 206 GLGEMIDDRIDMLLTLANLSTPPESIPINLLI 237 (328)
Q Consensus 206 G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~ 237 (328)
|+|||.|++...+..||..++. .+.+.-+.
T Consensus 265 glgetdeei~~tl~dLr~~~vd--v~t~gqym 294 (360)
T KOG2672 265 GLGETDEEIKQTLKDLRAADVD--VVTFGQYM 294 (360)
T ss_pred CCCCCHHHHHHHHHHHHHCCCC--EEECCCCC
T ss_conf 2678889999999999971970--88400005
No 64
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.43 E-value=3.3e-11 Score=94.76 Aligned_cols=201 Identities=20% Similarity=0.345 Sum_probs=139.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCC--
Q ss_conf 5699986453078683423212433547775---6410006857999999999964-----98389973036888744--
Q gi|254780485|r 51 HIQLSKLLNIKTGGCPENCGYCNQSVHNKSK---LKASKLINVDQVLKEAKNAKEN-----GATRYCMGAAWREPKER-- 120 (328)
Q Consensus 51 ~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~---~~~~~~~~~Eei~~~a~~~~~~-----G~~~~~l~~~~~~~~~~-- 120 (328)
...+..+|- .|..-|.||+|....... ...|. +-++++.+..... -++.+.+++| +|...
T Consensus 34 ~~slYiHiP----FC~~~C~YC~fn~~~~~~~~~~~~Y~----~aL~~Ei~~~~~~~~~~~~v~ti~~GGG--TPslL~~ 103 (416)
T COG0635 34 PLSLYIHIP----FCVSKCPYCDFNSHVTKRGQPVDEYL----DALLEEIELVAALLGGQREVKTIYFGGG--TPSLLSP 103 (416)
T ss_pred CCEEEEECC----CHHCCCCCCCCEEEECCCCCHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEEECCC--CCCCCCH
T ss_conf 736888723----21250887888545347777399999----9999999998862278872789997698--3267799
Q ss_pred -CHHHHHHHHHHHCC-C--CCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf -28999998876213-6--883241--025699999998741576069751343-7777320588889899999999999
Q gi|254780485|r 121 -DLSIIVDMIKGVKS-L--GLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVR 193 (328)
Q Consensus 121 -~~~~~~e~i~~i~~-~--~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~ 193 (328)
.++.+++.++..-. . ..++.+ +++..+.+.++.++++|++++.+++.+ .++..+.+...|+.++-.++++.++
T Consensus 104 ~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~ 183 (416)
T COG0635 104 EQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELAR 183 (416)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999972357888279995088866899999999829877986014599899997478887899999999998
Q ss_pred HCCC-CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC-----CCHHHHHHHHHHHH
Q ss_conf 8798-5577078668-989999999999997408888602054112048741244568-----79899999999999
Q gi|254780485|r 194 KSGI-KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK-----VDPIEHVRIISVAR 263 (328)
Q Consensus 194 ~~G~-~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~-----~~~~e~lr~iAi~R 263 (328)
+.|+ .++.-.|||+ ++|.++..+.+..+.+++ |+.+++.-+.-.|+|++..... |++++.+.+....+
T Consensus 184 ~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~ 258 (416)
T COG0635 184 KAGFTSINIDLIYGLPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVE 258 (416)
T ss_pred HCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6389747887243899999999999999998349--98786462686588567662335778998689999999999
No 65
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.40 E-value=1.2e-10 Score=91.03 Aligned_cols=194 Identities=12% Similarity=0.175 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEE-EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 91899999999988862898569-99864530786834232124335477756410006857999999999964983899
Q gi|254780485|r 31 PFNDLLFWSHTVHRKNFEPNHIQ-LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYC 109 (328)
Q Consensus 31 ~~~el~~~Aa~~~r~~~~g~~V~-~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~ 109 (328)
|+.--+..+..+.+++..|++-+ +...+.. |..|...|.+|+.-..+.. ... ..++.||.++.++ +.|+.-+.
T Consensus 4 ~~~~~~~~~~y~~~~~~~g~kr~Plvl~le~-t~rCNL~C~~C~~i~~~~~-~l~-~~Ls~ee~~~~~~---e~Gap~V~ 77 (318)
T TIGR03470 4 PLRQNLRVGAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYPAE-ILK-QRLSVEECLRAVD---ECGAPVVS 77 (318)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE-CCCCCCCCCCCCCCCCCCH-HHH-CCCCHHHHHHHHH---HCCCCEEE
T ss_conf 4899999999999877337646675887312-1322677889974136764-654-4389999999999---84997899
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCCCEEE-ECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCC-CCCCCHHHHHH
Q ss_conf 73036888744289999988762136883241-02569999999874157606975134377773205-88889899999
Q gi|254780485|r 110 MGAAWREPKERDLSIIVDMIKGVKSLGLETCM-TLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHV-TTTHTFEDRLQ 187 (328)
Q Consensus 110 l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~-~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~-~~~~~~~~~l~ 187 (328)
+ +||++....++..+ ++.+++.+..+.+ +.|.+.++.+.+++++|...+.+.+|..++.+... +....++.-++
T Consensus 78 i-tGGEPLLr~dl~eI---v~~a~~~g~~v~l~TNG~Ll~k~i~~~~~~~~~~~~VsLDG~~e~HD~~r~~~G~Fd~av~ 153 (318)
T TIGR03470 78 I-PGGEPLLHPEIDEI---VRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVE 153 (318)
T ss_pred E-CCCCCCCCCCHHHH---HHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 5-18874556479999---9999975997999775520099999985188836999801787886688717977999999
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCE
Q ss_conf 9999998798557707866898999999999999740888860205411
Q gi|254780485|r 188 TLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLL 236 (328)
Q Consensus 188 ~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328)
.++.|++.|++++...-+=-+++.+++.+.+..+.+|++ +++.+++-
T Consensus 154 aIr~ak~~G~~V~iN~Tvf~~~n~~~i~~~~d~~~~lgV--dgi~isp~ 200 (318)
T TIGR03470 154 AIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGV--DGMTISPG 200 (318)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC--CEEEECCC
T ss_conf 999999869946799897068999999999999987699--73897665
No 66
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.37 E-value=1.2e-10 Score=90.95 Aligned_cols=207 Identities=14% Similarity=0.094 Sum_probs=129.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCHHHHH
Q ss_conf 98569998645307868342321243354777564100068579999999999649--8389973036888744289999
Q gi|254780485|r 49 PNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG--ATRYCMGAAWREPKERDLSIIV 126 (328)
Q Consensus 49 g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G--~~~~~l~~~~~~~~~~~~~~~~ 126 (328)
|+...+..+|- .|...|.||.|.......... ..-.+.+.++.+...+.| +..+.+++| +|... .+.+.
T Consensus 41 ~~~~~LYiHIP----FC~~~C~YC~F~~~~~~~~~~--~~Y~~aL~kEi~~~~~~~~~i~tiy~GGG--TPs~L-~~~l~ 111 (424)
T PRK08629 41 GKKYMLYAHVP----FCHTLCPYCSFHRFLFKEDKA--RAYFISLRKEMEMVKELGYDFESMYVGGG--TTTIL-EDELA 111 (424)
T ss_pred CCEEEEEEECC----CCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCCCCEEEECCC--HHHCC-HHHHH
T ss_conf 98568998905----407988899895826882419--99999999999998853998376997797--12257-99999
Q ss_pred HHHHHHCCCC--CCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHH---HHHHHHHHHHHCCC-
Q ss_conf 9887621368--8324--1025699999998741576069751343-777732058888989---99999999998798-
Q gi|254780485|r 127 DMIKGVKSLG--LETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFE---DRLQTLENVRKSGI- 197 (328)
Q Consensus 127 e~i~~i~~~~--~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~---~~l~~~~~a~~~G~- 197 (328)
+.+..+++.. .++. ++++.++.+.++.|++. ++++.+++.+ .+...+.+...|+++ +-++.++.|++. +
T Consensus 112 ~~l~~~~~~f~~~EiTiE~nP~~~~~~~l~~l~~~-vNRiSlGVQsf~~~~L~~lgR~h~~~~~~~~~~~~~~a~~~-f~ 189 (424)
T PRK08629 112 KTLELAKKLFSIKEVSCESDPNHLDPPGLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMAAKGL-FP 189 (424)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-CCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CC
T ss_conf 99999986489824999538686899999999864-25166623669988999809999854699999999997634-46
Q ss_pred CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC---CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 5577078668-9899999999999974088886020541120487412445---687989999999999996868
Q gi|254780485|r 198 KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN---KKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 198 ~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~---~~~~~~e~lr~iAi~RL~lP~ 268 (328)
.++.-.|||+ ++|.++..+.+..+-+++. +.+++.++...|+|..... +.++.+.......+.+-...+
T Consensus 190 niniDLIyGlP~QT~~~~~~~l~~~~~l~p--~hIS~Y~L~iep~t~~~~~~~l~~p~~d~~~~~~~i~~~~~~~ 262 (424)
T PRK08629 190 IINVDLIFNFPGQTDEVLQHDLDIAKRLDP--RQITTYPLMKSHQTRKSVKGSLGASQKDNARQYRQILNSLFGQ 262 (424)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCC--CEEECCCCEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 253532327999999999999999981798--9898636622647213423789989879999999999997279
No 67
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=99.28 E-value=8.1e-10 Score=85.45 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=139.9
Q ss_pred EEEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC-C---------CCCCC
Q ss_conf 999864530786834232124--33547775641000685799999999996498389973036-8---------88744
Q gi|254780485|r 53 QLSKLLNIKTGGCPENCGYCN--QSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW-R---------EPKER 120 (328)
Q Consensus 53 ~~~~~in~~TN~C~~~C~fCa--f~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~-~---------~~~~~ 120 (328)
.+-+-||| +++|.+-|+||= +-|. .. .-.+.|.|+.++..+.+.|.+++.|.+.- + +....
T Consensus 154 ~~~sfv~I-m~GCdkfCtYCiVPYtRG-----~E-~Sr~~~~Il~Ev~~l~~~G~kEi~LLGQNVN~YRG~~frne~~~~ 226 (456)
T TIGR01574 154 KFKSFVNI-MEGCDKFCTYCIVPYTRG-----EE-ISRPLDDILQEVQKLAEKGVKEITLLGQNVNAYRGKDFRNEGKTV 226 (456)
T ss_pred CCEEEEEC-CCCCCCCCCEEECCCCCC-----CC-CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 42252403-147688545466153048-----20-125744699999999865864874036530111587522588673
Q ss_pred CHHHHHHHHHH---HCCC---CCCEEEECCCCCHHHHHHHHCCC--CCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 28999998876---2136---88324102569999999874157--6069751343-77773205888898999999999
Q gi|254780485|r 121 DLSIIVDMIKG---VKSL---GLETCMTLGMLSFEQAQILSKAG--LDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLEN 191 (328)
Q Consensus 121 ~~~~~~e~i~~---i~~~---~~~i~~~~g~~~~~~~~~Lk~aG--~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~ 191 (328)
++..+++.++. .++. --.+.-|+-.++++-+.-+.+.+ ++.+++=+.+ +.+..+....+++-+++++.+.-
T Consensus 227 ~f~dLL~~l~rrCe~~~~i~RIRFtsSHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~~v~K 306 (456)
T TIGR01574 227 DFADLLRELARRCEVKDGIERIRFTSSHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLELVRK 306 (456)
T ss_pred CHHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66999999987510221585113137878765446878873789466664375200707998510775568999999999
Q ss_pred HHHC--CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHH
Q ss_conf 9987--985577078668-9899999999999974088886020541120487412445687989
Q gi|254780485|r 192 VRKS--GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPI 253 (328)
Q Consensus 192 a~~~--G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~ 253 (328)
++++ .+..++-+|+|. |||.||--+.|..+++.+- ++...+-|.|.||||-.+.+.-=|+
T Consensus 307 Lk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~F--d~~f~F~Ys~ReGTpAa~m~d~vp~ 369 (456)
T TIGR01574 307 LKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEF--DSAFSFIYSPREGTPAADMPDDVPE 369 (456)
T ss_pred HHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCH
T ss_conf 98737871212453673687784668999999852262--4123344138676855678788648
No 68
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=99.25 E-value=2.3e-10 Score=89.08 Aligned_cols=196 Identities=17% Similarity=0.255 Sum_probs=146.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328)
...|+..|.||..... +... .-++++-...++.+.+.|...+.+....+++ .+.....+.++++.+++..+.+.
T Consensus 76 g~~c~~~c~fc~~~~~-~~p~----~pdp~ep~~~~~~~~~~~l~~~~~~~~~~ddl~dgg~~~~~~~~~~~~~~~p~~~ 150 (310)
T TIGR00510 76 GDICTRRCPFCDVAHG-RNPL----PPDPEEPEKLAETIKDLGLKYVVITSVDRDDLEDGGAGHLAECVEALREKLPNIK 150 (310)
T ss_pred HHHHHCCCCCCCCCCC-CCCC----CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 1365224763102246-7789----8873322568999987305535775122000234534678999999875245413
Q ss_pred EEC----CCC-CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCC-CCCHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHH
Q ss_conf 102----569-99999987415760697513437777320588-88989999999999987--98557707866898999
Q gi|254780485|r 141 MTL----GML-SFEQAQILSKAGLDYYNHNIDTSERFYPHVTT-THTFEDRLQTLENVRKS--GIKVCCGGILGLGEMID 212 (328)
Q Consensus 141 ~~~----g~~-~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~-~~~~~~~l~~~~~a~~~--G~~~~sg~l~G~gEt~e 212 (328)
+.. +.- ....+..+.+++.+.|++++|+.+++++.+.+ +.+|.+-+..++.+++. .+.+.+|+|+|+||+.+
T Consensus 151 ~e~l~~df~g~~~~~~~~~~~~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~g~~~glge~~~ 230 (310)
T TIGR00510 151 IETLVPDFRGRDLKALDILLDAPPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKSGLMVGLGETNE 230 (310)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHH
T ss_conf 21001320104689999886246134530112334543333013321688999999988750321011220110475247
Q ss_pred HHHHHHHHHHHCCCCCCEEECC-CEEEC-CCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999997408888602054-11204-8741244568798999999999999
Q gi|254780485|r 213 DRIDMLLTLANLSTPPESIPIN-LLIPI-PGSKFEENKKVDPIEHVRIISVARI 264 (328)
Q Consensus 213 eri~~l~~lr~l~~~~~~v~~~-~~~p~-~gt~l~~~~~~~~~e~lr~iAi~RL 264 (328)
+..+.+..|++.+.. .+.+. .+.|. ...|....-.+...++.+-.+..--
T Consensus 231 ~~~~~~~dl~~~g~~--~~~~g~y~~p~~~h~p~~~y~~p~~fd~~~~~~~~~g 282 (310)
T TIGR00510 231 EILQTLKDLRDHGVT--VLTLGQYLRPSRRHLPVKRYVSPEEFDYWKERALELG 282 (310)
T ss_pred HHHHHHHHHHHCCCC--EEECCCHHCCHHHCCCCHHCCCCCHHHHHHHHHHHHH
T ss_conf 899999989863740--5650101052001253000257402467887776510
No 69
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=99.21 E-value=5.4e-10 Score=86.64 Aligned_cols=209 Identities=17% Similarity=0.230 Sum_probs=141.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCC---CCHHHHHHHHHH
Q ss_conf 864530786834232124335477756410006857999999999964-9838997303688874---428999998876
Q gi|254780485|r 56 KLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN-GATRYCMGAAWREPKE---RDLSIIVDMIKG 131 (328)
Q Consensus 56 ~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~-G~~~~~l~~~~~~~~~---~~~~~~~e~i~~ 131 (328)
..+|+ +-+|+.-|+||+|.+.. .+|+..++..+.++++.++.. |.. +.+. ..++|.. ...+...++|+.
T Consensus 199 av~~f-aRGCPf~C~fCsQwkFW----rryR~RdPkKfvdEI~~L~r~hgVg-fF~L-ADEePT~Nr~~f~efCEe~Iar 271 (506)
T TIGR02026 199 AVPNF-ARGCPFTCNFCSQWKFW----RRYRARDPKKFVDEIEKLVREHGVG-FFIL-ADEEPTVNRKKFQEFCEELIAR 271 (506)
T ss_pred EEECC-CCCCCCCCCCCCCCHHH----HHHCCCCCCHHHHHHHHHHHHCCCC-EEEE-CCCCCCCCHHHHHHHHHHHHHC
T ss_conf 87316-78697655745752044----5404788613899999998631853-3663-2788730168999999999857
Q ss_pred HCCCCCCEEEECC----CCCHHHHHHHHCCCCCEEEEECCCC-HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 2136883241025----6999999987415760697513437-7773205888898999999999998798557707866
Q gi|254780485|r 132 VKSLGLETCMTLG----MLSFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILG 206 (328)
Q Consensus 132 i~~~~~~i~~~~g----~~~~~~~~~Lk~aG~~~~~~~let~-~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G 206 (328)
--...+.+..|.- ..+++.+.-.+.||+..+.++.|.+ .-..+.+.+..+.++=-++++-.++.+|-+-|+.+.|
T Consensus 272 ~l~~~v~~ginTRv~Di~RD~~~L~lyR~AGl~~i~LG~Eaaa~~~Ld~~rK~t~~~~nkeAIrLlr~h~i~~~A~fi~g 351 (506)
T TIGR02026 272 NLQIKVTWGINTRVTDIVRDADLLKLYRRAGLVHISLGTEAAAQLTLDRFRKETTVSENKEAIRLLRQHNILSEAQFIVG 351 (506)
T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 89569999651113042402898888886060300121004665323121366752444899999976184021002425
Q ss_pred C-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC-----------------------CCCCCHHHHHHHHH--
Q ss_conf 8-989999999999997408888602054112048741244-----------------------56879899999999--
Q gi|254780485|r 207 L-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE-----------------------NKKVDPIEHVRIIS-- 260 (328)
Q Consensus 207 ~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~-----------------------~~~~~~~e~lr~iA-- 260 (328)
+ .||.++..+.+..+-+- .|+.+--+..+|+|.|+|-. ...+++.+.|+.|-
T Consensus 352 ~e~~~~~~~~etyr~~ldw--~PD~~~w~~yTPwpft~lf~~l~dr~~v~LDy~Kynf~~pi~~p~~m~r~~~l~gV~~~ 429 (506)
T TIGR02026 352 LENETDETLEETYRQLLDW--DPDLANWLMYTPWPFTSLFEELSDRVEVQLDYTKYNFVTPILKPTLMPREEILKGVLLN 429 (506)
T ss_pred CCCCCHHHHHHHHHHHHCC--CCCHHHHCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 4358756899999997337--83324214558987636788630756898414201124532366778768999999999
Q ss_pred HHHHHC-CCCCCEE
Q ss_conf 999968-6872142
Q gi|254780485|r 261 VARILM-PKSRLRL 273 (328)
Q Consensus 261 i~RL~l-P~~~i~i 273 (328)
-.|+++ |++..+.
T Consensus 430 y~rfy~rPKAl~~y 443 (506)
T TIGR02026 430 YIRFYMRPKALLRY 443 (506)
T ss_pred HHHHHCCCHHHHHC
T ss_conf 99862251488742
No 70
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=99.20 E-value=2.4e-10 Score=88.95 Aligned_cols=236 Identities=19% Similarity=0.265 Sum_probs=153.0
Q ss_pred EEECCCCCCCCCCCCCCCCCC-CCCCC--CCC-CCCHHHHHHHHHHH----HHCCCEEEEEECCCCCC-CCCCHHHHHHH
Q ss_conf 453078683423212433547-77564--100-06857999999999----96498389973036888-74428999998
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN-KSKLK--ASK-LINVDQVLKEAKNA----KENGATRYCMGAAWREP-KERDLSIIVDM 128 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~-~~~~~--~~~-~~~~Eei~~~a~~~----~~~G~~~~~l~~~~~~~-~~~~~~~~~e~ 128 (328)
|+|+ .|...|.||+|.... +++.+ .|. -|..| +....... ....+..+.|++|+... ..+.++++.+.
T Consensus 5 IHIP--fCe~kC~YCdFNsy~~ksd~p~~eY~~aL~~d-l~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~~ 81 (371)
T TIGR00539 5 IHIP--FCEQKCGYCDFNSYAQKSDIPKEEYLQALLQD-LKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLEE 81 (371)
T ss_pred EECC--HHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 5560--22375888653324554278567999999999-99999860443236765568856887414689999999999
Q ss_pred HHHHCC---CCCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 876213---68832--41025699999998741576069751343-777732058888989999999999987985-577
Q gi|254780485|r 129 IKGVKS---LGLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCC 201 (328)
Q Consensus 129 i~~i~~---~~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~s 201 (328)
|...-+ ...++ -+|++.++.+.++.|+++|+.++.+++.| ..+...++-.-|+..+-.-.++.|++.|++ ++-
T Consensus 82 I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enisl 161 (371)
T TIGR00539 82 IKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLENISL 161 (371)
T ss_pred HHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 87521743102111110782125698863676557023321334541557888642113334667999998717520005
Q ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC------CCHHHHHHHHHHHHHHCCCCCCE--
Q ss_conf 078668-989999999999997408888602054112048741244568------79899999999999968687214--
Q gi|254780485|r 202 GGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK------VDPIEHVRIISVARILMPKSRLR-- 272 (328)
Q Consensus 202 g~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~------~~~~e~lr~iAi~RL~lP~~~i~-- 272 (328)
-.|||+ ++|.++..+.|....+|.. ..++.-.|.-.|+|-|+..++ |+.+...-+.-+-|=.|--..++
T Consensus 162 DL~~glP~qtl~~l~~~l~~A~eL~~--~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~a~~~e~v~~~le~~g~~QY 239 (371)
T TIGR00539 162 DLMYGLPLQTLEELKEELKLALELDA--EHLSVYALIVEPNTVFEKRAKKGRLHLPDDDALAEIYEVVRELLEAFGYKQY 239 (371)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 54407861348999999865531784--5112332342233045426888878946703456799999999985582222
Q ss_pred -EE-------------EHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf -23-------------1156516568999998099889977866
Q gi|254780485|r 273 -LA-------------AGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 273 -i~-------------~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
+| ++| ...+.+++-|||-|.++++..
T Consensus 240 E~SnyAkaG~q~KHNL~YW----~~~dYlg~GaGA~G~~~~~r~ 279 (371)
T TIGR00539 240 EVSNYAKAGYQVKHNLAYW----SAEDYLGIGAGAHGKVANERT 279 (371)
T ss_pred HHHHHHHCCCCCCCCCCCC----CCCCCEEECCCEEEECCCCEE
T ss_conf 1238863787620022336----766613533740100147402
No 71
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=99.19 E-value=3.8e-09 Score=80.98 Aligned_cols=190 Identities=18% Similarity=0.257 Sum_probs=136.2
Q ss_pred EEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC----------H---
Q ss_conf 64530-786834232124335477756410006857999999999964983899730368887442----------8---
Q gi|254780485|r 57 LLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERD----------L--- 122 (328)
Q Consensus 57 ~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~----------~--- 122 (328)
.-+++ +..|...|+||..-.- + -...-.+.|+|+.+|+.+.+.|.+++++++..-.....| -
T Consensus 165 YAYlKvaEGC~~~CaFCiIP~~-r---G~~rSR~ie~i~~Ea~~L~~~GvKEiiliaQDTt~YG~DL~~R~~~~~~e~v~ 240 (475)
T TIGR01125 165 YAYLKVAEGCNRRCAFCIIPSL-R---GKLRSRPIEEILKEAKRLVDQGVKEIILIAQDTTAYGVDLYTRESEFDGEQVK 240 (475)
T ss_pred EEEEEECCCCCCCCCEECCCCC-C---CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCCCCHHHH
T ss_conf 0368700577898652136233-6---77677688889999999984398389999640347764111105522401457
Q ss_pred HHHHHHHHHHCCCC-C-CE---EEECCCCCHHHHHHHHCCCCCEEEEECC-----CCHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999887621368-8-32---4102569999999874157606975134-----3777732058888989999999999
Q gi|254780485|r 123 SIIVDMIKGVKSLG-L-ET---CMTLGMLSFEQAQILSKAGLDYYNHNID-----TSERFYPHVTTTHTFEDRLQTLENV 192 (328)
Q Consensus 123 ~~~~e~i~~i~~~~-~-~i---~~~~g~~~~~~~~~Lk~aG~~~~~~~le-----t~~~~~~~~~~~~~~~~~l~~~~~a 192 (328)
..+.+++..+.+.+ . ++ .+.+..++++....+.+.. -++=++| .+|++.+....+.+.+.-++.++.+
T Consensus 241 ~~L~~Ll~~L~k~~G~~WiR~~YlYP~~~~~~vI~~m~~~~--KvLPYlDiPLQH~sd~ILK~M~R~~~~~~~~~~i~~~ 318 (475)
T TIGR01125 241 SKLVELLEELGKLGGIYWIRLLYLYPDELTDDVIDLMAEGP--KVLPYLDIPLQHASDRILKLMRRPGSGEEQLDLIERL 318 (475)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCC--CCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 89999999740058962278887608888667889986389--8051225431238737874278996388999999999
Q ss_pred HHC--CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHH
Q ss_conf 987--985577078668-98999999999999740888860205411204874124456879899
Q gi|254780485|r 193 RKS--GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIE 254 (328)
Q Consensus 193 ~~~--G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e 254 (328)
++. -.-.=||+|+|. |||.||-=+++..+.+.+. +-+++|.+-|.+||.-.+-|..=|+|
T Consensus 319 R~~~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~--D~lG~F~YS~eEgt~A~~Lpd~vPeE 381 (475)
T TIGR01125 319 REKVPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQF--DRLGVFTYSPEEGTDAFALPDQVPEE 381 (475)
T ss_pred HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCHHHCCCCCCCHH
T ss_conf 9755661772246886889987889999999852021--50000207832366035077887888
No 72
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , ..
Probab=99.15 E-value=2.2e-09 Score=82.50 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=136.0
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-----CCCC-HHHHHH
Q ss_conf 9986453078683423212433547775641000685799999999996498389973036888-----7442-899999
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-----KERD-LSIIVD 127 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-----~~~~-~~~~~e 127 (328)
+..++.| +..|..+|+||= .++.++...- ..+|+|++.|+.+...|++++-|. +..+. -... +..+++
T Consensus 144 ~i~i~pI-~~GC~~~CsYCi-~K~ARG~L~S---~PpEkiV~~ar~l~~~G~kEI~iT-s~DT~~YG~DiG~~kLPeLL~ 217 (487)
T TIGR01578 144 LIEILPI-NQGCLGNCSYCI-TKIARGKLAS---YPPEKIVEKARELVAEGAKEIWIT-SQDTAAYGKDIGERKLPELLR 217 (487)
T ss_pred CCCCCCC-CCCCCCCCCEEE-EEEEECCCCC---CCCHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCCCCCCCHHHHH
T ss_conf 7555543-666356887546-7776445248---872256899999997053126513-446663442237621279999
Q ss_pred -HHHHHCCCCCCEEEECCCCC--------HHHHHHHHC-CCCCEEEE-ECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf -88762136883241025699--------999998741-57606975-1343-777732058888989999999999987
Q gi|254780485|r 128 -MIKGVKSLGLETCMTLGMLS--------FEQAQILSK-AGLDYYNH-NIDT-SERFYPHVTTTHTFEDRLQTLENVRKS 195 (328)
Q Consensus 128 -~i~~i~~~~~~i~~~~g~~~--------~~~~~~Lk~-aG~~~~~~-~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~ 195 (328)
++..|+.. -.+-+|++. ++-..-+.+ -=+..++| =+.| +.....+....|..++.-+++...++.
T Consensus 218 ~~~t~I~g~---F~~RVGMmnP~~~~~IldeL~~v~~~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~ 294 (487)
T TIGR01578 218 RLITEIPGD---FRLRVGMMNPKNVLEILDELIEVFQSHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRER 294 (487)
T ss_pred HHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 998625993---27876258876334788999999854882000115420158758897448565257789999999876
Q ss_pred --CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCH---HHHHHHHH-HHHHHCCC
Q ss_conf --985577078668-989999999999997408888602054112048741244568798---99999999-99996868
Q gi|254780485|r 196 --GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDP---IEHVRIIS-VARILMPK 268 (328)
Q Consensus 196 --G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~---~e~lr~iA-i~RL~lP~ 268 (328)
++..++=+|+|. .||.+|--+.|..++++- |+.+-++.|.|.|||+=....+.+. .+--+.++ ++--+-|.
T Consensus 295 ~~~~tl~TDiIvGFp~EtdddFE~T~~l~~k~R--Pe~In~~~fS~RpgT~Aa~~~~~~~~i~K~Rs~~l~dlfysyePy 372 (487)
T TIGR01578 295 FPDLTLSTDIIVGFPTETDDDFEETMELLRKYR--PEKINVTKFSPRPGTEAAKMKRLDTNIKKKRSKALTDLFYSYEPY 372 (487)
T ss_pred HCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHCCCC
T ss_conf 268647300167178988355899999999828--983453024688887113305899620116667777654202630
Q ss_pred C
Q ss_conf 7
Q gi|254780485|r 269 S 269 (328)
Q Consensus 269 ~ 269 (328)
+
T Consensus 373 a 373 (487)
T TIGR01578 373 A 373 (487)
T ss_pred C
T ss_conf 0
No 73
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.15 E-value=2.1e-08 Score=75.97 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=132.6
Q ss_pred EEEC-CCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4530-78683423212433547--775641000685799999999996--498389973036888744289999988762
Q gi|254780485|r 58 LNIK-TGGCPENCGYCNQSVHN--KSKLKASKLINVDQVLKEAKNAKE--NGATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328)
Q Consensus 58 in~~-TN~C~~~C~fCaf~~~~--~~~~~~~~~~~~Eei~~~a~~~~~--~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328)
|.+. |-.|..||-||+--..+ ++.... +..++|..+++.+...+ .+.-+.++-+.|++...-.+.++++.++.+
T Consensus 109 iqVRp~tgCnlnCIfCSVdeGp~SrtR~~d-y~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~ 187 (414)
T COG2100 109 IQVRPSTGCNLNCIFCSVDEGPYSRTRKLD-YVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEH 187 (414)
T ss_pred EEECCCCCCCCEEEEEECCCCCCCCEECCC-EEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCC
T ss_conf 996477664320589852578643300256-1756899999999999640787278753788875453399999997438
Q ss_pred CCCC-CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC--CCCHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 1368-83241025699999998741576069751343-7777320588--889899999999999879855770786689
Q gi|254780485|r 133 KSLG-LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT--THTFEDRLQTLENVRKSGIKVCCGGILGLG 208 (328)
Q Consensus 133 ~~~~-~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~--~~~~~~~l~~~~~a~~~G~~~~sg~l~G~g 208 (328)
+... +....+...++++....|.+||+|++++.+++ .|...+.... ..+.+.-+++.+.+..+|+.+-..=+.=.|
T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG 267 (414)
T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPG 267 (414)
T ss_pred CCCEEEEEEECCEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 98428998507644459999999970875588620237988987742840117899999999998679888983144278
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CEEECCCEEECCCCCCC-CCCCCCHHHHHHHHHHHH
Q ss_conf 89999999999997408888--60205411204874124-456879899999999999
Q gi|254780485|r 209 EMIDDRIDMLLTLANLSTPP--ESIPINLLIPIPGSKFE-ENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 209 Et~eeri~~l~~lr~l~~~~--~~v~~~~~~p~~gt~l~-~~~~~~~~e~lr~iAi~R 263 (328)
-..+|....+.+.++++... .-..++.+.|++-..-. -..+.+-.|+.+++.-.-
T Consensus 268 ~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelE 325 (414)
T COG2100 268 VNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELE 325 (414)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6817789999999984888779985307755402068863035575999999999999
No 74
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=99.12 E-value=8e-09 Score=78.78 Aligned_cols=181 Identities=15% Similarity=0.249 Sum_probs=131.5
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC---CC-CC---CCCHHHHHHHHHH-
Q ss_conf 7868342321243--3547775641000685799999999996498389973036---88-87---4428999998876-
Q gi|254780485|r 62 TGGCPENCGYCNQ--SVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW---RE-PK---ERDLSIIVDMIKG- 131 (328)
Q Consensus 62 TN~C~~~C~fCaf--~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~---~~-~~---~~~~~~~~e~i~~- 131 (328)
-|+|...|+||.. .|+. +.+-.+.|.|+++++.....|.+|++|.|.- +. +. ...+..+++.|-.
T Consensus 217 QdGCn~~CsyC~IP~~RGt-----~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~~g~~L~~Ll~~i~~q 291 (492)
T TIGR01579 217 QDGCNKFCSYCIIPFARGT-----RSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGENGSSLAKLLEQILKQ 291 (492)
T ss_pred ECCCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7588988441014033789-----76416678999999999737755999840014445688876676089999999864
Q ss_pred HCCC-CCCE-EEECCCCCHHHHHHHHC-C-CCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCEEE
Q ss_conf 2136-8832-41025699999998741-5-76069751343-777732058888989999999999987--985577078
Q gi|254780485|r 132 VKSL-GLET-CMTLGMLSFEQAQILSK-A-GLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGI 204 (328)
Q Consensus 132 i~~~-~~~i-~~~~g~~~~~~~~~Lk~-a-G~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~~sg~l 204 (328)
|... .+.+ .+.+..++++-++.++. . =.-..|+.|.+ +....+....+++-++.++++..++.. .+..||=+|
T Consensus 292 ~~g~~RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~I 371 (492)
T TIGR01579 292 IPGIERIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVI 371 (492)
T ss_pred CCCCEEEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 68834676325776550489999973476416320000222773798424878876899999999985077630376037
Q ss_pred ECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf 668-989999999999997408888602054112048741244568
Q gi|254780485|r 205 LGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328)
Q Consensus 205 ~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328)
+|+ |||.++.-+.+..++++... .+=+|+|-|.|||+=...+.
T Consensus 372 VGFP~E~eedFq~t~~~~~~~~~~--~~HiFpyS~R~~T~A~~m~~ 415 (492)
T TIGR01579 372 VGFPGESEEDFQETLRIVKEIEFS--GLHIFPYSARPGTPASAMDD 415 (492)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCCCCCCC
T ss_conf 408889889999999998526602--13354268843281204787
No 75
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.09 E-value=2.1e-09 Score=82.66 Aligned_cols=212 Identities=18% Similarity=0.169 Sum_probs=123.6
Q ss_pred HHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 88628985699986453078683423212433547775641----00068579999999999649838997303688874
Q gi|254780485|r 44 RKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKA----SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE 119 (328)
Q Consensus 44 r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~----~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~ 119 (328)
|.=..|.+. .+.+ ||+|..+|.||..|...++...- ....+.|+|.++|+...+.|+. + +||+ | .
T Consensus 22 ~~C~~G~Kl----VlFv-TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Gas---i-TGGd-P-l 90 (353)
T COG2108 22 RLCVLGGKL----VLFV-TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGAS---I-TGGD-P-L 90 (353)
T ss_pred HHHHCCCCE----EEEE-ECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCC---C-CCCC-H-H
T ss_conf 777258716----9999-5566898525768777648863311563147578899999972466653---3-2787-4-8
Q ss_pred CCHHHHHHHHHHHCCCC---CCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 42899999887621368---83241--02569999999874157606975134377773205888898999999999998
Q gi|254780485|r 120 RDLSIIVDMIKGVKSLG---LETCM--TLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK 194 (328)
Q Consensus 120 ~~~~~~~e~i~~i~~~~---~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328)
..++++.+.+|.+|+.+ .++|+ +.-..+++.++.|.+||+|.+-.... .......+.|++.++.|++
T Consensus 91 ~~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~--------~~~~~~~e~~i~~l~~A~~ 162 (353)
T COG2108 91 LEIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP--------RPGSKSSEKYIENLKIAKK 162 (353)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCC--------CCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999998763532059984066568889999998679875994689--------7211231899999999998
Q ss_pred CCCCCCCEEEECCCCCHH-HHHHHHHHHHHCCCCCCEEECCCEEECCCCC-------C------CCCCCCCHHHHHHHHH
Q ss_conf 798557707866898999-9999999997408888602054112048741-------2------4456879899999999
Q gi|254780485|r 195 SGIKVCCGGILGLGEMID-DRIDMLLTLANLSTPPESIPINLLIPIPGSK-------F------EENKKVDPIEHVRIIS 260 (328)
Q Consensus 195 ~G~~~~sg~l~G~gEt~e-eri~~l~~lr~l~~~~~~v~~~~~~p~~gt~-------l------~~~~~~~~~e~lr~iA 260 (328)
.|+.++--+-. ....+ .+++....+-+... .++-+|=|-...++. + ......|.+-.||.+.
T Consensus 163 ~g~dvG~EiPa--ipg~e~~i~e~~~~~~~~~~--~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~ 238 (353)
T COG2108 163 YGMDVGVEIPA--IPGEEEAILEFAKALDENGL--DFLNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLK 238 (353)
T ss_pred HCCCCEEECCC--CCCHHHHHHHHHHHHHHCCC--CEEEEEEEEECCCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHH
T ss_conf 28551043278--86568899999999876066--534210044052119999866761326875543445899999999
Q ss_pred HHHHHCCCCCCEEEEHHHH
Q ss_conf 9999686872142311565
Q gi|254780485|r 261 VARILMPKSRLRLAAGRAM 279 (328)
Q Consensus 261 i~RL~lP~~~i~i~~~~~~ 279 (328)
.+--= -+..+++.++..+
T Consensus 239 ~~~~~-~~l~vH~Css~~K 256 (353)
T COG2108 239 WAEEN-WDLTVHYCSSKFK 256 (353)
T ss_pred HHHCC-CCCEEEECCHHHH
T ss_conf 87515-6754897735666
No 76
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.02 E-value=1.3e-07 Score=70.66 Aligned_cols=210 Identities=19% Similarity=0.247 Sum_probs=139.4
Q ss_pred EEEECCCCCCC-CCCCCCCCCCCCCCCC------------CCCCCCHHHHHHHHHHHHHCCCE----EEEEECCCCCCCC
Q ss_conf 64530786834-2321243354777564------------10006857999999999964983----8997303688874
Q gi|254780485|r 57 LLNIKTGGCPE-NCGYCNQSVHNKSKLK------------ASKLINVDQVLKEAKNAKENGAT----RYCMGAAWREPKE 119 (328)
Q Consensus 57 ~in~~TN~C~~-~C~fCaf~~~~~~~~~------------~~~~~~~Eei~~~a~~~~~~G~~----~~~l~~~~~~~~~ 119 (328)
.+..+--.|+. .|.||.+.-...++.. ....-+.+++....+++...|.. ++.+.+|.-+ .
T Consensus 69 aVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFt--a 146 (515)
T COG1243 69 AVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFT--A 146 (515)
T ss_pred EEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--C
T ss_conf 98438889999807758997777888554788842667776057918888888999997399864289999626566--8
Q ss_pred CCHHHHHHHHHH----HC-------------C------CCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHC
Q ss_conf 428999998876----21-------------3------6883241025699999998741576069751343-7777320
Q gi|254780485|r 120 RDLSIIVDMIKG----VK-------------S------LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPH 175 (328)
Q Consensus 120 ~~~~~~~e~i~~----i~-------------~------~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~ 175 (328)
.+.+|-..-++. +. + .++-+..-+....++++..|++.|+..+.++.+| .......
T Consensus 147 ~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~ 226 (515)
T COG1243 147 LSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLER 226 (515)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
T ss_conf 88789999999999865312204889887400023422679983484100779999999638838998326579999998
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCC-CCCCEEECCCEEECCCCCCCC------C
Q ss_conf 58888989999999999987985577078668-989999999999997408-888602054112048741244------5
Q gi|254780485|r 176 VTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLS-TPPESIPINLLIPIPGSKFEE------N 247 (328)
Q Consensus 176 ~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~-~~~~~v~~~~~~p~~gt~l~~------~ 247 (328)
...+|+.++-.++.+.+++.|++++.+||.|+ |-..+--++....+-+.. ..|+++-+-|..-.+||+|.. -
T Consensus 227 ~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Y 306 (515)
T COG1243 227 TKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLY 306 (515)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHCCCC
T ss_conf 33896199999999999851837999965899998867789999999718888987578840279878269999970898
Q ss_pred CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 687989999999999996868
Q gi|254780485|r 248 KKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP~ 268 (328)
.+-+.+|..-.+|-.-.++|+
T Consensus 307 kpy~~EEaVeli~~i~~~~p~ 327 (515)
T COG1243 307 KPYTTEEAVELIVEIYRLEPK 327 (515)
T ss_pred CCCCHHHHHHHHHHHHHHCCC
T ss_conf 779889999999999986677
No 77
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.00 E-value=1.9e-07 Score=69.51 Aligned_cols=173 Identities=18% Similarity=0.288 Sum_probs=110.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 998645307868342321243354777564100068579999999999649-8389973036888744289999988762
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328)
....+++ |+.|..+|.||..+...+ ....++.++..+....+.+.| ...+ +.+||++... ..+.++++.+
T Consensus 19 ~~~~~~~-t~~Cnl~C~~C~~~~~~~----~~~el~~~~~~~~~~~~~~~g~~~~v-~~~gGEPll~---~~~~ei~~~~ 89 (347)
T COG0535 19 LVVGIEL-TNRCNLACKHCYAEAGKK----LPGELSTEEDLRVIDELAELGEIPVV-IFTGGEPLLR---PDLLEIVEYA 89 (347)
T ss_pred CEEEEEC-CCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHCCCEEEE-EECCCCCEEC---CCHHHHHHHH
T ss_conf 3799855-887687499877242677----67735687878999999871884499-8079873334---5799999998
Q ss_pred CCC-CCCEEEEC-C-CCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCC-CEEEEC
Q ss_conf 136-88324102-5-699999998741576069751343-7777320588-8898999999999998798557-707866
Q gi|254780485|r 133 KSL-GLETCMTL-G-MLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVC-CGGILG 206 (328)
Q Consensus 133 ~~~-~~~i~~~~-g-~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~-sg~l~G 206 (328)
++. +..+.++. | .++++.+++++++|++.+.+.+|+ .++.+..... +..++..++.++.+++.|+.+. .+.+-+
T Consensus 90 ~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSld~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~~ 169 (347)
T COG0535 90 RKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVTK 169 (347)
T ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEC
T ss_conf 51387289882687545388999887668876999974588532140027762699999999999873970489999956
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC
Q ss_conf 898999999999999740888860205411204
Q gi|254780485|r 207 LGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328)
Q Consensus 207 ~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328)
.+.++.-+....+++++.. .+.+.++.|.
T Consensus 170 --~n~~~l~~~~~~~~~~g~~--~~~~~~~~~~ 198 (347)
T COG0535 170 --INYDELPEIADLAAELGVD--ELNVFPLIPV 198 (347)
T ss_pred --CCHHHHHHHHHHHHHCCCC--CEEEEEEEEC
T ss_conf --6346589999999865976--0576764431
No 78
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.96 E-value=2.5e-07 Score=68.79 Aligned_cols=164 Identities=11% Similarity=0.134 Sum_probs=97.8
Q ss_pred EEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CHHHHHHHHHHHC
Q ss_conf 4530786834232124335-47775641000685799999999996498389973036888744---2899999887621
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSV-HNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER---DLSIIVDMIKGVK 133 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~-~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~---~~~~~~e~i~~i~ 133 (328)
+.+ |+.|..+|+||-... ..+........++.|.+...++.+.+....++.+...|++|... .++.+.+.++...
T Consensus 9 ~~~-T~~CNL~C~YCy~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~~~~i~f~GGEPLL~~~~~~~~~~~~~~~~~ 87 (370)
T PRK13758 9 KPA-SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLEFFEELMELQRKHN 87 (370)
T ss_pred ECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 668-7884889976688376886666664548299999999999863689538999772220698369999999999855
Q ss_pred CCCCC----EEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCC----CCCCHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 36883----241025699999998741576069751343777732058----8889899999999999879855770786
Q gi|254780485|r 134 SLGLE----TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVT----TTHTFEDRLQTLENVRKSGIKVCCGGIL 205 (328)
Q Consensus 134 ~~~~~----i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~----~~~~~~~~l~~~~~a~~~G~~~~sg~l~ 205 (328)
..+.. +..+.-.++++.++.|++.++ .+.+.+|..++++.+.+ .+.||+.-++.++.+++.|+..+.-+.+
T Consensus 88 ~~~~~i~~~i~TNGtLL~~e~~~~l~~~~~-~I~ISlDG~~~~HD~~R~~~~G~Gsf~~v~~~i~~l~~~~~~~~i~~~i 166 (370)
T PRK13758 88 YKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVV 166 (370)
T ss_pred CCCCEEEEEEEECCEECCHHHHHHHHHCCE-EEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 689769999851887668999999997694-8999646888887400688899705999999999999739970089999
Q ss_pred C--CCCCHHHHHHHHHHHHHCCC
Q ss_conf 6--89899999999999974088
Q gi|254780485|r 206 G--LGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 206 G--~gEt~eeri~~l~~lr~l~~ 226 (328)
- -....++.+++ +.+++.
T Consensus 167 ~~~~~~~~~~i~~~---~~~~g~ 186 (370)
T PRK13758 167 TSNTARHVNKIYKY---FKEKDF 186 (370)
T ss_pred ECCCCCCHHHHHHH---HHHCCC
T ss_conf 18731189999999---997699
No 79
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.95 E-value=8.7e-08 Score=71.85 Aligned_cols=190 Identities=14% Similarity=0.174 Sum_probs=119.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHCCC---CC
Q ss_conf 7868342321243354777564100068579999999999649-8389973036888744289999988762136---88
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGVKSL---GL 137 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~---~~ 137 (328)
||.|-++|+||--+..+. .++. .+++|||.......+... +..+.+.+|.-..++...|..++..|.++-. .=
T Consensus 61 TN~CiyDC~YCINr~s~~--~pra-~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyTmE~mi~var~LRle~~f~G 137 (404)
T COG4277 61 TNFCIYDCAYCINRSSND--TPRA-RFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYTMEEMIEVARILRLEHKFRG 137 (404)
T ss_pred HHHHHHHHHHHHCCCCCC--CCCC-CCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 625777638875555578--8543-0589999999998988742433000246336861479999999998832045575
Q ss_pred CEEEECCCCCHHHHHHHHCCC--CCEEEEECCCC-HHHHHCCCCCCCHHHHHHHHHHHHH---------C------CC-C
Q ss_conf 324102569999999874157--60697513437-7773205888898999999999998---------7------98-5
Q gi|254780485|r 138 ETCMTLGMLSFEQAQILSKAG--LDYYNHNIDTS-ERFYPHVTTTHTFEDRLQTLENVRK---------S------GI-K 198 (328)
Q Consensus 138 ~i~~~~g~~~~~~~~~Lk~aG--~~~~~~~let~-~~~~~~~~~~~~~~~~l~~~~~a~~---------~------G~-~ 198 (328)
-||+.+-+ ...-...+++| +|++.+|+|.. +.-.+..-|.+++.+.+..|.+.|. . -+ +
T Consensus 138 YIHlK~IP--gas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fap 215 (404)
T COG4277 138 YIHLKIIP--GASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAP 215 (404)
T ss_pred EEEEEECC--CCCHHHHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC
T ss_conf 79987569--9998999998653410577674488644666188888378888989999877651550222104723367
Q ss_pred --CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf --577078668-98999999999999740888860205411204874124456879899999
Q gi|254780485|r 199 --VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVR 257 (328)
Q Consensus 199 --~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr 257 (328)
-++-||+|- +||.++++..-..|..--. -.-|.++.|.|.+++|+.....+....-.|
T Consensus 216 aGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~-lkRVyySaf~Pv~~s~~lp~~~pplmRehR 276 (404)
T COG4277 216 AGQSTQMIVGADGETDEDILSRSENLYGRYS-LKRVYYSAFSPVPSSPLLPDDKPPLMREHR 276 (404)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 7873278871588744889988887753243-148986213336889888666785367777
No 80
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process.
Probab=98.88 E-value=2e-08 Score=76.15 Aligned_cols=196 Identities=18% Similarity=0.248 Sum_probs=123.1
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 453078683423212433547775-6410006857999999999964983899730368887442899999887621368
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNKSK-LKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLG 136 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~~~-~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~ 136 (328)
+++ |=.|+..|-||+ |+-+ .....-||-|+=.+...++.++|.-++++ +||++....|+. |+++..++.+
T Consensus 11 aEL-ThRCPL~CPYCS----NPLel~R~~~EL~T~~W~~Vl~qAa~lGvlqlHf-SGGEP~aR~DL~---eLv~~A~~LG 81 (363)
T TIGR02109 11 AEL-THRCPLQCPYCS----NPLELARRKAELTTEEWTDVLTQAAELGVLQLHF-SGGEPLARPDLV---ELVAHARRLG 81 (363)
T ss_pred HHH-HHCCCCCCCCCC----CCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEC-CCCCCCCCCCHH---HHHHHHHHCC
T ss_conf 998-725888777989----7068885114688889999999998539067513-077666335779---9999997758
Q ss_pred C--CEEEECCCCCHHHHHHHHCCCCCEEEEEC-CCCHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHH
Q ss_conf 8--32410256999999987415760697513-437777320588-8898999999999998798557707866898999
Q gi|254780485|r 137 L--ETCMTLGMLSFEQAQILSKAGLDYYNHNI-DTSERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGEMID 212 (328)
Q Consensus 137 ~--~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l-et~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~e 212 (328)
. ++..|-=-++++-+..|+++|+|.+=+.+ ++.+..-..+-. |+.+.+.+++-+.++++|+|.+-.+++ |=+...
T Consensus 82 lYtNLITSGvGLt~~rl~~L~~aGLDHvQlSfQ~vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~g~PltLN~V~-HR~Ni~ 160 (363)
T TIGR02109 82 LYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGLKNAFEQKLAVARAVKAAGLPLTLNFVL-HRHNID 160 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHCC-CCCHHH
T ss_conf 7014677634567999999975798578876414787888641250258999999999999618981760200-242021
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC--CCCCH---HHHHHHHHHHHHHC
Q ss_conf 99999999974088886020541120487412445--68798---99999999999968
Q gi|254780485|r 213 DRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN--KKVDP---IEHVRIISVARILM 266 (328)
Q Consensus 213 eri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~--~~~~~---~e~lr~iAi~RL~l 266 (328)
++=+.+..-.+|+...-.|.. -.++-+- +.++ -.||- ++.-|+|+-+|==+
T Consensus 161 ~i~~~i~La~~L~AdrvE~A~--~QyYGWA-~~NR~aLlPt~~Ql~~a~r~V~~aRer~ 216 (363)
T TIGR02109 161 QIPEIIELAIELGADRVELAT--TQYYGWA-LLNRAALLPTREQLEEATRIVEEARERL 216 (363)
T ss_pred HHHHHHHHHHHCCCCEEEEEE--ECCHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 367899999863898488874--0202256-7745424898899999999999999998
No 81
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=98.85 E-value=1.7e-07 Score=69.85 Aligned_cols=239 Identities=18% Similarity=0.256 Sum_probs=142.0
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCH-HHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCHHHH
Q ss_conf 56999864530786834232124335---47775641000685-79999999999-649838997303688874428999
Q gi|254780485|r 51 HIQLSKLLNIKTGGCPENCGYCNQSV---HNKSKLKASKLINV-DQVLKEAKNAK-ENGATRYCMGAAWREPKERDLSII 125 (328)
Q Consensus 51 ~V~~~~~in~~TN~C~~~C~fCaf~~---~~~~~~~~~~~~~~-Eei~~~a~~~~-~~G~~~~~l~~~~~~~~~~~~~~~ 125 (328)
.-++..+|-+ |...|-|||=+. +.+.....| +... .||.-.+-... ++-+..+|- ||++|.....+.+
T Consensus 51 PLSLY~HiPF----C~~~CyFCgCn~I~t~~~~~~~~Y-L~~l~ke~~l~~~~~d~~R~V~QLHw--GGGTP~YL~~~Q~ 123 (462)
T TIGR00538 51 PLSLYVHIPF----CEKACYFCGCNVIITRRKEKKDPY-LEALKKEIALVAPLLDKDREVAQLHW--GGGTPTYLSPEQI 123 (462)
T ss_pred CCCCCCCCHH----HHCCCCCCCCCEEECCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCHHHH
T ss_conf 8411245523----412132014661130556510167-99999999998777524894688762--7898333788999
Q ss_pred HHHHHHHCCC------CCCEEEE--CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9988762136------8832410--25699999998741576069751343-7777320588889899999999999879
Q gi|254780485|r 126 VDMIKGVKSL------GLETCMT--LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG 196 (328)
Q Consensus 126 ~e~i~~i~~~------~~~i~~~--~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G 196 (328)
-.+...|++. +.++.+. +-.++.+.+..|++.|.+++..++.- .++.-..+..=.+++=--+.|+.|+++|
T Consensus 124 ~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~~~~L~~~GFNRlS~GvQDfd~~VQ~avnR~QP~e~i~~~~~~~R~~G 203 (462)
T TIGR00538 124 EELMKEIREAFPNFSEDAEISIEIDPRYLTKEVIKALRDEGFNRLSFGVQDFDKEVQQAVNRIQPEEMIFELMEKAREAG 203 (462)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999873201158447765237413788999999758966423521078555444313486899999999998669
Q ss_pred CC-CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECC-----CCCCCCCCCCCHHHHHHHHH--HHHHH--
Q ss_conf 85-577078668-989999999999997408888602054112048-----74124456879899999999--99996--
Q gi|254780485|r 197 IK-VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIP-----GSKFEENKKVDPIEHVRIIS--VARIL-- 265 (328)
Q Consensus 197 ~~-~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~-----gt~l~~~~~~~~~e~lr~iA--i~RL~-- 265 (328)
+. ++.=.|||+ -.|.|--...|.+..+|+. +=++++.|-..| --.+....-||++|=|+++- |+-|-
T Consensus 204 f~SiN~DLIYGLP~Qt~esF~~Tl~~v~~LnP--DRlAvFnyAyvP~vk~~q~k~~~~~LPS~~~KL~Il~~~I~~L~~~ 281 (462)
T TIGR00538 204 FESINLDLIYGLPKQTKESFEKTLEKVAELNP--DRLAVFNYAYVPWVKPAQRKIPEEALPSAEEKLEILEETIAFLTEA 281 (462)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEHHHHHHHHCCHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 82787420138888786789999999853187--7001210222101577850276200588789999999999999757
Q ss_pred -----------CCCCCC-----------EEEEHHHHHCHHHHHHHHHHCCCEE-EECCEE
Q ss_conf -----------868721-----------4231156516568999998099889-977866
Q gi|254780485|r 266 -----------MPKSRL-----------RLAAGRAMMSDELQALCFFSGANSI-FVGDTL 302 (328)
Q Consensus 266 -----------lP~~~i-----------~i~~~~~~~~~~~~~~~L~~GaN~~-~~g~~~ 302 (328)
-|+..+ ++|++-- -++. -.|-.|+.|| |.||++
T Consensus 282 gY~fIGMDHFAkpddELavAqr~geL~RNFQGYTT--~~~~--~lLG~GvtSIsm~~D~Y 337 (462)
T TIGR00538 282 GYVFIGMDHFAKPDDELAVAQRKGELHRNFQGYTT--KKET--DLLGFGVTSISMLGDVY 337 (462)
T ss_pred CCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCC--CCCC--EEEEECHHHHHHHCCCC
T ss_conf 97585144577971389999850530005765224--8972--15630110211200212
No 82
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=98.82 E-value=3.3e-06 Score=61.28 Aligned_cols=194 Identities=14% Similarity=0.172 Sum_probs=125.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 7868342321243354777564100068579999999999---6498389973036888744289999988762136883
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK---ENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~---~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~ 138 (328)
.-.|+..|.||.-.-... ......++.||+.+++.... +.....+.+ +||+ | .-..+++.+.++..|+.+++
T Consensus 27 l~GC~lrC~~ChNpet~~--~~~g~~~t~~el~~~i~~~~~f~~~sgGGVT~-SGGE-P-llq~ef~~~l~~~~k~~gi~ 101 (246)
T PRK11145 27 MQGCLMRCLYCHNRDTWD--THGGKEVTVEELMKEVVTYRHFMNASGGGVTA-SGGE-A-ILQAEFVRDWFRACKKEGIH 101 (246)
T ss_pred ECCCCCCCCCCCCHHHHC--CCCCEECCHHHHHHHHHHHHHHHHHCCCEEEE-ECCC-E-ECCHHHHHHHHHHHHHCCCC
T ss_conf 068778899897967848--67998755999999999879998605963898-6995-1-26899999999999887998
Q ss_pred EEE-ECCCCC--HHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEE--EECCCCCHH
Q ss_conf 241-025699--999998741576069751343-77773205888898999999999998798557707--866898999
Q gi|254780485|r 139 TCM-TLGMLS--FEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGG--ILGLGEMID 212 (328)
Q Consensus 139 i~~-~~g~~~--~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~--l~G~gEt~e 212 (328)
.++ +.|..+ .+.+.++... +|.+++.+.. .++.|.++ ++.+.+..|+.++.+++.|.++-..+ |=|...+.+
T Consensus 102 taidTnG~~~~~~~~~~~ll~~-~D~vl~DiK~~d~~~h~~~-tG~~n~~iL~nl~~l~~~~~~~~iR~pvIPg~nD~~e 179 (246)
T PRK11145 102 TCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNL-VGVSNHRTLEFARYLAKRNQKTWIRYVVVPGWTDDDD 179 (246)
T ss_pred EEEECCCCCCCCHHHHHHHHHH-CCEEEECCCCCCHHHHHHH-HCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHH
T ss_conf 9998999987557999998863-2345764666898999999-8889189999999999789978998867799889999
Q ss_pred HHHHHHHHHHHCCCCCCEEECCCEEE---C------CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999974088886020541120---4------874124456879899999999999
Q gi|254780485|r 213 DRIDMLLTLANLSTPPESIPINLLIP---I------PGSKFEENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 213 eri~~l~~lr~l~~~~~~v~~~~~~p---~------~gt~l~~~~~~~~~e~lr~iAi~R 263 (328)
++-.....++++.. ...|-+-|+++ . ..-+|.+.++++.++..+...+++
T Consensus 180 ~i~~~a~fl~~l~~-v~~v~lLPyH~~G~~Ky~~lg~~Y~~~~~~~~~~e~l~~~~~i~~ 238 (246)
T PRK11145 180 SAHRLGEFIKDMGN-IEKVELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERIKGILE 238 (246)
T ss_pred HHHHHHHHHHHCCC-CCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999997699-763665788756654799839998888989979999999999999
No 83
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.8e-06 Score=63.11 Aligned_cols=194 Identities=19% Similarity=0.286 Sum_probs=125.2
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 7868342321243354777-564100068579999999999649838997303688874428999998876213688324
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKS-KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETC 140 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~-~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~ 140 (328)
+-.|...|.||--...... .......+++|++.+.+.. ..++.-++. +|++ |. -..+++.+.++..|+.++.++
T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~--~~~~~gvt~-SGGE-P~-~q~e~~~~~~~~ake~Gl~~~ 116 (260)
T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFY--SESGGGVTF-SGGE-PT-LQAEFALDLLRAAKERGLHVA 116 (260)
T ss_pred ECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHHH--CCCCCEEEE-ECCH-HH-HHHHHHHHHHHHHHHCCCEEE
T ss_conf 789899899897946760656565645789899998743--169988999-8960-44-439999999999998799089
Q ss_pred E-ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCHHHHHH
Q ss_conf 1-025699999998741576069751343-7777320588889899999999999879855770786--68989999999
Q gi|254780485|r 141 M-TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GLGEMIDDRID 216 (328)
Q Consensus 141 ~-~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~gEt~eeri~ 216 (328)
+ +.|..+.+...+|.+. +|.+++.+.. +++.|.+++ +.+.+.-++.++.+.+.|..+-.+.++ |..+..+|..+
T Consensus 117 l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~yr~~t-g~~~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~i~~ 194 (260)
T COG1180 117 LDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADLGVHVEIRTLVIPGYNDDEEEIRE 194 (260)
T ss_pred EECCCCCCHHHHHHHHHH-CCCEEEECCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHH
T ss_conf 976899882689999974-23148840668878889875-6871688999999861798399988733898899999999
Q ss_pred HHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999974088886020541120487412445687989999999999996
Q gi|254780485|r 217 MLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARIL 265 (328)
Q Consensus 217 ~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~ 265 (328)
....++++.. .+|+-++..+|.-.+...++....+.-+...+++-.
T Consensus 195 i~~~i~~~~~---~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~~~ 240 (260)
T COG1180 195 LAEFIADLGP---EIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAKEE 240 (260)
T ss_pred HHHHHHHCCC---CCCEEEECCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999973086---665587566874011357999288899888778999
No 84
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.71 E-value=1.2e-05 Score=57.52 Aligned_cols=191 Identities=15% Similarity=0.158 Sum_probs=114.4
Q ss_pred EEEEC-CCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCHHHHHHHHH---
Q ss_conf 64530-786-834232124335477756410006857999999999964-983899730368887442899999887---
Q gi|254780485|r 57 LLNIK-TGG-CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN-GATRYCMGAAWREPKERDLSIIVDMIK--- 130 (328)
Q Consensus 57 ~in~~-TN~-C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~-G~~~~~l~~~~~~~~~~~~~~~~e~i~--- 130 (328)
++-+. |+. |..+|.||-+..+.+. ...++.|...+.++.+.+. +...+.+...|.+|..-..+.+-.++.
T Consensus 8 ~~~~kpt~~~CNL~C~YC~~~~~~~~----~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~f~~~~~~l~~ 83 (378)
T COG0641 8 HVMAKPTGFECNLDCKYCFYLEKESL----QRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLDFYRKAVALQQ 83 (378)
T ss_pred EEEECCCCCCCCCCCCEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 34546666766998885076177777----78789999999999999608987479999788640340879999999999
Q ss_pred HHCCCCCCEE----EECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCC----CCCCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 6213688324----1025699999998741576069751343777732058----8889899999999999879855770
Q gi|254780485|r 131 GVKSLGLETC----MTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVT----TTHTFEDRLQTLENVRKSGIKVCCG 202 (328)
Q Consensus 131 ~i~~~~~~i~----~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~----~~~~~~~~l~~~~~a~~~G~~~~sg 202 (328)
.-+. +..++ .|.-.++++-..-|++.++ .+.+.+|..++++.+.+ .+.|++.-++.++.+++.+++....
T Consensus 84 k~~~-~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~ 161 (378)
T COG0641 84 KYAN-GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTL 161 (378)
T ss_pred HHCC-CCCEEEEEEECCCCCCHHHHHHHHHCCC-EEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8605-8825789987603257999999985296-6999666817761110357899856999999999999758846999
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC--CCCCCCCCHHHHHH
Q ss_conf 78668989999999999997408888602054112048741--24456879899999
Q gi|254780485|r 203 GILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK--FEENKKVDPIEHVR 257 (328)
Q Consensus 203 ~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~--l~~~~~~~~~e~lr 257 (328)
+.+. -+...+..+....|.+.+. ..+.+.+.++..++. +. ....++.++-+
T Consensus 162 ~vv~-~~n~~~~~ei~~~l~~~g~--~~i~fip~~~~~~~~~~~~-~~~~~~~~~~~ 214 (378)
T COG0641 162 TVVN-RQNVLHPEEIYHFLKSEGS--KFIQFIPLVESDNRGDSLL-EFSVTAEEYGQ 214 (378)
T ss_pred EEEC-HHHHHCHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCC-CCCCCHHHHHH
T ss_conf 9976-4453079999999997376--6389885116888775322-12346667999
No 85
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.70 E-value=4.5e-06 Score=60.39 Aligned_cols=169 Identities=18% Similarity=0.266 Sum_probs=106.0
Q ss_pred ECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3078-6834232124335477756410006857999999999964------98389973036888744289999988762
Q gi|254780485|r 60 IKTG-GCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN------GATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328)
Q Consensus 60 ~~TN-~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~------G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328)
+.+- .|..+|.||--....+....+-.....+.|.+..+..... ...++-+++.|++...-.+ -++|+.+
T Consensus 28 tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~~L---~elI~~~ 104 (296)
T COG0731 28 TPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYPNL---GELIEEI 104 (296)
T ss_pred CCCHHHHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCH---HHHHHHH
T ss_conf 6606543577758966677777777872415899999999984225665678877999379883346488---9999999
Q ss_pred CCCC--CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCC---CCHHHHHHHHHHHHHC--CCCCCCEEE
Q ss_conf 1368--83241025699999998741576069751343-77773205888---8989999999999987--985577078
Q gi|254780485|r 133 KSLG--LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTT---HTFEDRLQTLENVRKS--GIKVCCGGI 204 (328)
Q Consensus 133 ~~~~--~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~---~~~~~~l~~~~~a~~~--G~~~~sg~l 204 (328)
++.+ ....++.|.+ ++..+.|. -+|.+...+++ .+..|.+++.. .+|+..++.++..++. |-.+.=+|+
T Consensus 105 k~~g~~~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tl 181 (296)
T COG0731 105 KKRGKKTTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTL 181 (296)
T ss_pred HHCCCCEEEEEECCCH-HHHHHHHC--CCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 8607950899938976-99998740--58879998146888899983488874529999999997401278748999998
Q ss_pred E-CCCCCHHHHHHHHHHHHHCCCCCCEEECCCE
Q ss_conf 6-6898999999999999740888860205411
Q gi|254780485|r 205 L-GLGEMIDDRIDMLLTLANLSTPPESIPINLL 236 (328)
Q Consensus 205 ~-G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328)
+ |...+.++.-+....|+.+. |+.|-++..
T Consensus 182 vkg~N~~~e~~~~~a~ll~~~~--Pd~velk~~ 212 (296)
T COG0731 182 VKGINDDEEELEEYAELLERIN--PDFVELKTY 212 (296)
T ss_pred ECCCCCCHHHHHHHHHHHHHCC--CCEEEEECC
T ss_conf 5264687088999999998539--976998347
No 86
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain. A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity.
Probab=98.68 E-value=4.2e-06 Score=60.58 Aligned_cols=193 Identities=22% Similarity=0.331 Sum_probs=132.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CCCCHHHHHHHHHHHHH----C-CCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 7868342321243354777564-10-00685799999999996----4-9838997303688874428999998876213
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLK-AS-KLINVDQVLKEAKNAKE----N-GATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~-~~-~~~~~Eei~~~a~~~~~----~-G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328)
=+.|..+|.||.-. .+... .. +-.+.||+++++...+. . |.-. ++||++. ...+.+.+.+++.|+
T Consensus 22 mqGC~lRC~YChNP---DTW~~~~~G~~~t~~el~~e~~~yk~f~~~sGGGvT---~SGGEPl--lQ~~F~~~~f~~cK~ 93 (243)
T TIGR02493 22 MQGCPLRCQYCHNP---DTWDLKKGGTEVTVEELIKEVKSYKDFFKASGGGVT---VSGGEPL--LQPEFVLELFKACKK 93 (243)
T ss_pred ECCHHHHHHHCCCC---CCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCEE---EECCCCC--CCHHHHHHHHHHHHH
T ss_conf 43536775305898---743358878120789999999989988720799589---8689502--016999999999998
Q ss_pred -CCCCEEE-ECC----CCC--HHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCE-EE
Q ss_conf -6883241-025----699--999998741576069751343-7777320588889899999999999879855770-78
Q gi|254780485|r 135 -LGLETCM-TLG----MLS--FEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCG-GI 204 (328)
Q Consensus 135 -~~~~i~~-~~g----~~~--~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg-~l 204 (328)
.++|.|+ +.| .+. .+.+.+|-+. .|-+++.+.. .++.|.++-...+.+.-|+..+.+.+.|.|+-.= .+
T Consensus 94 ~~GiHTclDT~GGCftf~~~~~~~~~~lLe~-TDLvLLDiK~~~~~~y~~LTg~~~~~ptl~Fa~~L~~~~kP~WiRYVl 172 (243)
T TIGR02493 94 ELGIHTCLDTSGGCFTFLGGFTEAADELLEV-TDLVLLDIKHIDPEKYKKLTGVKSLEPTLEFAKYLAKRNKPIWIRYVL 172 (243)
T ss_pred HCCCEEEEECCCCHHHHHCCHHHHHHHHHHC-CCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 5698388744883433412124899975100-587886234368124000145677524589999999658988999986
Q ss_pred E-CCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECC------CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6-68989999999999997408888602---054112048------74124456879899999999999
Q gi|254780485|r 205 L-GLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIP------GSKFEENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 205 ~-G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~------gt~l~~~~~~~~~e~lr~iAi~R 263 (328)
+ |.-+..||+-.....+..+...-+-| |+.-+--++ .=+|++.++++.+..-++=-+.|
T Consensus 173 VPGyTD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KWe~~g~~Y~L~~~~~p~~e~~~~~~~~~~ 241 (243)
T TIGR02493 173 VPGYTDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKWEALGIEYKLEGVKPPNKEQLERIKEIFK 241 (243)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 588779989999999999746992799865688602110387668975888889879899999999973
No 87
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation.
Probab=98.62 E-value=3.3e-06 Score=61.31 Aligned_cols=196 Identities=20% Similarity=0.286 Sum_probs=133.1
Q ss_pred EEEEEEECCCCCCCCCCCCC--CCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCHHHHHHHH
Q ss_conf 99864530786834232124--3354777-56410006857999999999964983899730-36888744289999988
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCN--QSVHNKS-KLKASKLINVDQVLKEAKNAKENGATRYCMGA-AWREPKERDLSIIVDMI 129 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCa--f~~~~~~-~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~-~~~~~~~~~~~~~~e~i 129 (328)
-+-++-+ --.|.-.|.||. |-..|.+ +.-...+|++|+.+.+|+..... +..+..++ .|.+++......-...+
T Consensus 24 ARMH~AV-ApACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~-i~QLSVvGIAGPGDpLan~~~Tf~Tl 101 (461)
T TIGR01290 24 ARMHLAV-APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAE-IPQLSVVGIAGPGDPLANIKKTFQTL 101 (461)
T ss_pred HHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHH
T ss_conf 1113421-443345545568641667888876201346848999999999850-67531563257886245750008999
Q ss_pred HHHCC--CCCCEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHH---------------HHHHHHH
Q ss_conf 76213--68832410-25699999998741576069751343-777732058888989---------------9999999
Q gi|254780485|r 130 KGVKS--LGLETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFE---------------DRLQTLE 190 (328)
Q Consensus 130 ~~i~~--~~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~---------------~~l~~~~ 190 (328)
..++. .++.+|+| .|..-.+..-+|.+.|+|.+.+=+.. .|+...+|=|+..|+ +=++-++
T Consensus 102 ~~v~~~~PDvklCLSTNGL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa~lL~erQl~G~~ 181 (461)
T TIGR01290 102 ELVAREVPDVKLCLSTNGLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAAKLLIERQLEGLE 181 (461)
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99985178214200126563134652464238881798831406355103065233267333548999998999999999
Q ss_pred HHHHCCC--CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECC--CCCCCC--CCCCCHHHH
Q ss_conf 9998798--5577078668989999999999997408888602054112048--741244--568798999
Q gi|254780485|r 191 NVRKSGI--KVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP--GSKFEE--NKKVDPIEH 255 (328)
Q Consensus 191 ~a~~~G~--~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~--gt~l~~--~~~~~~~e~ 255 (328)
.+-|-|+ |++|=||=|. ..+|.++.-...++++.+=|=| +||+..| ||-+.- ...|++.|.
T Consensus 182 ~L~ergiL~KvNSvlIPGi--ND~HL~eVsk~vk~~GAfLHNv--mPLis~PeHGt~ygl~Gq~~P~~~el 248 (461)
T TIGR01290 182 KLTERGILVKVNSVLIPGI--NDEHLVEVSKKVKELGAFLHNV--MPLISAPEHGTVYGLNGQRAPAPSEL 248 (461)
T ss_pred HHHHCCCEEEECCEECCCC--CCHHHHHHHHHHHCCCCHHCCC--CCCEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 9973885488800643898--8178999877751046400054--42101489883116787888898999
No 88
>KOG4355 consensus
Probab=98.52 E-value=9.8e-06 Score=58.11 Aligned_cols=210 Identities=20% Similarity=0.328 Sum_probs=117.3
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC----HHHHH-HH
Q ss_conf 99864530786834232124335477756410006857999999999964983899730368887442----89999-98
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERD----LSIIV-DM 128 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~----~~~~~-e~ 128 (328)
+-.++.||| .|-+.|.||- ++|.+....- .+.+++++.++...+.|..++-+.+-.-....++ .-.++ ..
T Consensus 187 lieIi~int-gclgaCtyck-Tkharg~l~s---y~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~kl 261 (547)
T KOG4355 187 LIEIISINT-GCLGACTYCK-TKHARGLLAS---YPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKL 261 (547)
T ss_pred CEEEEEECC-CCCCCCCCCC-CCCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 658999624-5541115556-5012433254---7889999999998851747998124543035544300069999999
Q ss_pred HHHHCCC-CCCEEEECCCCCHHHHH----HHHCCCCCEEEEE-CCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCC
Q ss_conf 8762136-88324102569999999----8741576069751-343-777732058888989999999999987--9855
Q gi|254780485|r 129 IKGVKSL-GLETCMTLGMLSFEQAQ----ILSKAGLDYYNHN-IDT-SERFYPHVTTTHTFEDRLQTLENVRKS--GIKV 199 (328)
Q Consensus 129 i~~i~~~-~~~i~~~~g~~~~~~~~----~Lk~aG~~~~~~~-let-~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~ 199 (328)
++.|.+. .+.+.+..-+.--+++. .|+---+-++.+. ..+ +....-.........+.-.+.+.+.+. |+.+
T Consensus 262 v~~iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~I 341 (547)
T KOG4355 262 VEVIPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITI 341 (547)
T ss_pred HHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 98653666443158788159988999998764870799983243357436888877787645678899888754798188
Q ss_pred CCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHC---CCCC
Q ss_conf 77078668-989999999999997408888602054112048741244568798999-99999999968---6872
Q gi|254780485|r 200 CCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEH-VRIISVARILM---PKSR 270 (328)
Q Consensus 200 ~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~-lr~iAi~RL~l---P~~~ 270 (328)
-+-||.|. +||.+|.-+.+..+++.. +| ++.+|-|.|.||||-+........+. -|+-++++++- |.+.
T Consensus 342 ATDiIcgFPtETdeDFeeTmeLv~kYK-FP-slfInQfyPRpGTPAAkmkki~a~~vkkRTk~ls~lF~sy~pYtd 415 (547)
T KOG4355 342 ATDIICGFPTETDEDFEETMELVRKYK-FP-SLFINQFYPRPGTPAAKMKKIPAVEVKKRTKALSELFRSYTPYTD 415 (547)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCC-CC-HHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 621242488871677999999999716-85-403530479998817865224379999888999999874187655
No 89
>PRK11194 hypothetical protein; Provisional
Probab=98.52 E-value=3.3e-05 Score=54.59 Aligned_cols=223 Identities=14% Similarity=0.201 Sum_probs=125.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------CC---CEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 683423212433547775641000685799999999996-------49---83899730368887442899999887621
Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKE-------NG---ATRYCMGAAWREPKERDLSIIVDMIKGVK 133 (328)
Q Consensus 64 ~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~-------~G---~~~~~l~~~~~~~~~~~~~~~~e~i~~i~ 133 (328)
.|..+|.||+=. +.+.. +-++..||+..+-.+.. .| ++.+++.+.|++.. -++.+...++.+.
T Consensus 112 GC~m~C~FCaTG---~~Gl~--RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~i~NiVfMGMGEPL~--NydnV~~ai~il~ 184 (372)
T PRK11194 112 GCALECKFCSTA---QQGFN--RNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL--NLNNVVPAMEIML 184 (372)
T ss_pred CCCCCCCCCCCC---CCHHH--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHH--HHHHHHHHHHHHC
T ss_conf 636899844588---64430--4878899999999999985320123666532167843784255--3999999999864
Q ss_pred CC-CC-----CEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC---CCCHHHHHHHHHHHH-HCCC---C
Q ss_conf 36-88-----32410-25699999998741576069751343-7777320588---889899999999999-8798---5
Q gi|254780485|r 134 SL-GL-----ETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT---THTFEDRLQTLENVR-KSGI---K 198 (328)
Q Consensus 134 ~~-~~-----~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~---~~~~~~~l~~~~~a~-~~G~---~ 198 (328)
+. +. .|.+| .|.... +.+|.+.---...+.|-+ ..+++.++.| +.+.++-++.++.-- +.+- +
T Consensus 185 ~~~g~~~s~R~ITvST~Givp~--I~~l~e~~~v~LAiSLHA~~de~R~~lmPin~~ypl~~L~~a~~~y~~~t~~~~~r 262 (372)
T PRK11194 185 DDFGFGLSKRRVTLSTSGVVPA--LDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGR 262 (372)
T ss_pred CCCCCCCCCCEEEEECCCCCHH--HHHHHHHCCCCEEEEECCCCHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 8546677778589977787269--99998631565698715898688987711031589899999999999970678852
Q ss_pred C--CCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEH
Q ss_conf 5--77078668989999999999997408888602054112048741244568798999999999999686872142311
Q gi|254780485|r 199 V--CCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAG 276 (328)
Q Consensus 199 ~--~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~ 276 (328)
+ --.+|=|..++.+|.-+....++.+.. .|-+-+|.|++|+++.. ++.....+...+.+ +..|..+-
T Consensus 263 vt~EYvLi~gvNDs~e~A~~L~~llk~~~~---~VNLIp~Np~~~~~~~~---p~~~~i~~F~~~L~----~~gi~vtv- 331 (372)
T PRK11194 263 VTVEYVMLDHVNDSTEHAHQLAELLKDTPC---KINLIPWNPFPGAPYGR---SSNSRIDRFSKVLM----EYGFTVIV- 331 (372)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHCCCCC---CEEEECCCCCCCCCCCC---CCHHHHHHHHHHHH----HCCCCEEE-
T ss_conf 899999836878999999999999759986---07745689989988879---99999999999999----78991797-
Q ss_pred HHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 5651656899999809988997786651588898999999
Q gi|254780485|r 277 RAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTIL 316 (328)
Q Consensus 277 ~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~ 316 (328)
|.+.|.|. .| |=|.+.|+++ +++...+++-
T Consensus 332 R~s~G~DI-----~A-ACGQLa~~~~----~~~~~~~~~~ 361 (372)
T PRK11194 332 RKTRGDDI-----DA-ACGQLAGDVI----DRTKRTLKKR 361 (372)
T ss_pred ECCCCCCH-----HH-HHHCCHHHHH----CCCHHHHHHH
T ss_conf 58998533-----35-4042625452----6005889988
No 90
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=98.49 E-value=7.3e-05 Score=52.27 Aligned_cols=201 Identities=17% Similarity=0.273 Sum_probs=113.7
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 999998886289856999864530-7868342----32124335477756410006857999999999964983899730
Q gi|254780485|r 38 WSHTVHRKNFEPNHIQLSKLLNIK-TGGCPEN----CGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGA 112 (328)
Q Consensus 38 ~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~----C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~ 112 (328)
.-|.+.+++ ++-.-++ ++.+- +-.|... |+||.=-.. +.. ...+.|.|+++++..++.|+++|-++-
T Consensus 168 ~GA~vv~qH-P~yp~~v--i~EiETyRGC~r~~~ggCSFCtEp~~---g~~--~~R~~e~Vv~EVkaLY~~GvrhFRlGR 239 (560)
T COG1031 168 LGAEVVKQH-PNYPEYV--ICEIETYRGCPRRVSGGCSFCTEPVR---GRP--EFRPPEDVVEEVKALYRAGVRHFRLGR 239 (560)
T ss_pred CCCHHHHHC-CCCCCEE--EEEEEECCCCCCCCCCCCCCCCCCCC---CCC--CCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 433587738-8995307--99985136873203688754167576---884--658989999999999970603056156
Q ss_pred CC-----------C-CCCCCCHHHHHHHHHHHCCCCCCE---E---EECCCC------CHHHHHHHHCC--CCCEEEEEC
Q ss_conf 36-----------8-887442899999887621368832---4---102569------99999987415--760697513
Q gi|254780485|r 113 AW-----------R-EPKERDLSIIVDMIKGVKSLGLET---C---MTLGML------SFEQAQILSKA--GLDYYNHNI 166 (328)
Q Consensus 113 ~~-----------~-~~~~~~~~~~~e~i~~i~~~~~~i---~---~~~g~~------~~~~~~~Lk~a--G~~~~~~~l 166 (328)
.. . -|.+ ..+-+.+.++.|++.-+.+ | +|++.+ +++.++.+.+- .-+-....+
T Consensus 240 Q~difsy~~~~~g~e~P~P-nPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGl 318 (560)
T COG1031 240 QADIFSYGADDNGGEVPRP-NPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGL 318 (560)
T ss_pred CCCEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 5410112156568879999-989999999999861898726654589956441584889999999986479875543304
Q ss_pred CCC-HHHHHCCCCCCCHHHHHHHHHHHHHCCC-------C---CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEE---
Q ss_conf 437-7773205888898999999999998798-------5---577078668-989999999999997408888602---
Q gi|254780485|r 167 DTS-ERFYPHVTTTHTFEDRLQTLENVRKSGI-------K---VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESI--- 231 (328)
Q Consensus 167 et~-~~~~~~~~~~~~~~~~l~~~~~a~~~G~-------~---~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v--- 231 (328)
||+ |...++-.-..|.++-++.++..-+.|- + -+..+++|+ |||.|----.-..|+++-...-.+
T Consensus 319 EsaDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRI 398 (560)
T COG1031 319 ESADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRI 398 (560)
T ss_pred CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 54687787640566998999999999998647667689842046620673388762777886499999997467468985
Q ss_pred ECCCEEECCCCCCCCC
Q ss_conf 0541120487412445
Q gi|254780485|r 232 PINLLIPIPGSKFEEN 247 (328)
Q Consensus 232 ~~~~~~p~~gt~l~~~ 247 (328)
-+--..+.|||||...
T Consensus 399 NIRqV~~fpgT~~~~~ 414 (560)
T COG1031 399 NIRQVVVFPGTPMWER 414 (560)
T ss_pred EEEEEEECCCCCHHHH
T ss_conf 2036763279724665
No 91
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=98.45 E-value=0.0002 Score=49.26 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCC---------CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHC
Q ss_conf 00685799999999996498389973036---------888744289999988762136883241025699999998741
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAW---------REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSK 156 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~---------~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~ 156 (328)
..++.|++++.++.+.+.|+..+-++-+. ..+...+.+++..+...++...+...+.+|.-+.+.++.-++
T Consensus 20 ~~fs~e~k~~ia~~Ld~aGVd~IEVghg~gl~~ss~~~g~~~~~d~e~i~~~~~~~~~aki~~l~~pg~~~~~dl~~A~~ 99 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAADVVKQAKLATLLLPGIGTIEDLKMAYD 99 (337)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98899999999999998098999944788877753346787798399999999974328378996356555888999995
Q ss_pred CCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCE
Q ss_conf 57606975134377773205888898999999999998798557707866898999999999999740888860205411
Q gi|254780485|r 157 AGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLL 236 (328)
Q Consensus 157 aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328)
.|++.+.+.....+ .+-..+.++.|+++|+.+....|..+--++++.++....+.+.+. +.|.
T Consensus 100 ~gv~~vria~~~te-----------ad~~~~~i~~ar~~G~~v~~~lm~s~~~~~e~l~~~a~~~~~~Ga--d~I~---- 162 (337)
T PRK08195 100 AGVRVVRVATHCTE-----------ADVSEQHIGLARELGMDTVGFLMMSHMASPEKLAEQAKLMESYGA--QCVY---- 162 (337)
T ss_pred CCCCEEEEEEECCH-----------HHHHHHHHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCCC--CEEE----
T ss_conf 79897999863148-----------877999999999779939997511024899999999999986599--9999----
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCEEEEHHHHHCH--HHHHHHHHHCCC---EEE--ECCEEECCCCC
Q ss_conf 204874124456879899999999999968-6872142311565165--689999980998---899--77866515888
Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARILM-PKSRLRLAAGRAMMSD--ELQALCFFSGAN---SIF--VGDTLLTAKNP 308 (328)
Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~l-P~~~i~i~~~~~~~~~--~~~~~~L~~GaN---~~~--~g~~~~t~~g~ 308 (328)
..+| .....|.+..+.+...|=.+ |+..+-+-+ -.++|- -..-.|+.+||+ +++ +|+ -++|.
T Consensus 163 --l~DT----~G~~~P~~v~~~v~~l~~~l~~~i~igfH~-HNnlGlAvANslaAveaGA~~ID~Ti~GlGe---gAGNa 232 (337)
T PRK08195 163 --VVDS----AGALLPDDVRARVRALRAALKPDTQVGFHG-HHNLGLGVANSLAAVEAGADRIDASLAGFGA---GAGNA 232 (337)
T ss_pred --ECCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCH
T ss_conf --7898----766799999999999998649985499985-3886759999999998099999850534488---87873
Q ss_pred CHHHHHHHHHHCCCCCCC
Q ss_conf 989999999982985324
Q gi|254780485|r 309 SYNKDTILFNRLGLIPDL 326 (328)
Q Consensus 309 ~~~~~~~~i~~~G~~P~~ 326 (328)
+.|..+..++++|+.+-.
T Consensus 233 ~lE~lva~l~r~g~~~g~ 250 (337)
T PRK08195 233 PLEVLVAVLDRMGWETGV 250 (337)
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 899999999746986587
No 92
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.44 E-value=3.4e-05 Score=54.44 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=99.7
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC--CC
Q ss_conf 7868342321243354777-5641000685799999999996-498389973036888744289999988762136--88
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKS-KLKASKLINVDQVLKEAKNAKE-NGATRYCMGAAWREPKERDLSIIVDMIKGVKSL--GL 137 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~-~~~~~~~~~~Eei~~~a~~~~~-~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~--~~ 137 (328)
|-.|..+|.||-+...... .......++.|.+...++...+ ....++.+...|++|....++++..+++..+.. +.
T Consensus 21 s~~CNL~C~YCyy~~~~~~~~~~~~~~Ms~e~l~~~I~~~~~~~~~~~v~f~~~GGEPlL~gl~f~~~~v~l~~~~~~g~ 100 (412)
T PRK13745 21 GAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKAMELQKKYARGR 100 (412)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 58758899867881614356567757898999999999999648998589998685445654789999999999853898
Q ss_pred C----EEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCC----CCCHHHHHHHHHHHHHCCCCCCCEEEECC--
Q ss_conf 3----2410256999999987415760697513437777320588----88989999999999987985577078668--
Q gi|254780485|r 138 E----TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTT----THTFEDRLQTLENVRKSGIKVCCGGILGL-- 207 (328)
Q Consensus 138 ~----i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~----~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-- 207 (328)
. +..|.-.++++..+-|++.++ .+.+.+|-.++++...++ +.|++.-++.++.+++.|+..+.=..+--
T Consensus 101 ~i~~siQTNGtLL~dew~~ff~~~~f-~VgiSiDGp~~~HD~~R~~~~G~gs~~~v~~~i~lL~~~~v~fn~L~vv~~~n 179 (412)
T PRK13745 101 TIDNCIQTNGTLLTDEWCEFFRENNW-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNAMAVVNDFN 179 (412)
T ss_pred EEEEEEEECCEECCHHHHHHHHHCCC-EEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECHH
T ss_conf 46899987787549999999998596-79996258878874027988998779999999999998499646999981115
Q ss_pred CCCHHHHHHHHHHHHHCCCC
Q ss_conf 98999999999999740888
Q gi|254780485|r 208 GEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 208 gEt~eeri~~l~~lr~l~~~ 227 (328)
.+..+++. ..+++++.+
T Consensus 180 ~~~p~~iY---~f~k~lg~~ 196 (412)
T PRK13745 180 ADYPLDFY---NFFKELDCH 196 (412)
T ss_pred HHCHHHHH---HHHHHCCCC
T ss_conf 45889999---999975996
No 93
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=98.42 E-value=0.00024 Score=48.83 Aligned_cols=213 Identities=15% Similarity=0.125 Sum_probs=142.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCC---------CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHC
Q ss_conf 00685799999999996498389973036---------888744289999988762136883241025699999998741
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAW---------REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSK 156 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~---------~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~ 156 (328)
..++.|++++.++.+.+.|+..+-+..+. ..+...+.+++..+...++........-+|..+.+.++...+
T Consensus 19 ~~fs~e~k~~ia~~Ld~aGVd~IEvg~g~g~~~ss~~~g~~~~~d~e~i~~~~~~~~~ak~~~l~~pg~~~~~dl~~a~~ 98 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYD 98 (333)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 99899999999999997198989960688888874335788899499999999874248056996478666999999996
Q ss_pred CCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCE
Q ss_conf 57606975134377773205888898999999999998798557707866898999999999999740888860205411
Q gi|254780485|r 157 AGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLL 236 (328)
Q Consensus 157 aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328)
.|++.+.+.....+. +--.+.++.|+++|+.+....+..+.-+++..++....+.+.+. +.|.
T Consensus 99 ~gv~~vri~~~~te~-----------d~~~~~i~~ak~~G~~v~~~~~~s~~~~~e~l~~~a~~~~~~Ga--d~I~---- 161 (333)
T TIGR03217 99 AGARTVRVATHCTEA-----------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGA--DCVY---- 161 (333)
T ss_pred CCCCEEEEEECCCHH-----------HHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCC--CEEE----
T ss_conf 699978986316678-----------88999999999769809999750568999999999999985699--9999----
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCEEEEHHHHHC--HHHHHHHHHHCCC---EEE--ECCEEECCCCC
Q ss_conf 204874124456879899999999999968-687214231156516--5689999980998---899--77866515888
Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARILM-PKSRLRLAAGRAMMS--DELQALCFFSGAN---SIF--VGDTLLTAKNP 308 (328)
Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~l-P~~~i~i~~~~~~~~--~~~~~~~L~~GaN---~~~--~g~~~~t~~g~ 308 (328)
..+| .....|.+.-+.+...|=.+ |+..+-+=+ =.++| .-....|+.+||+ +++ +|+ .+++.
T Consensus 162 --i~DT----~G~~~P~~v~~~v~~l~~~~~~~i~ig~H~-HNnlGlAvANslaAi~aGa~~VD~Ti~GlGe---~aGNa 231 (333)
T TIGR03217 162 --IVDS----AGAMLPDDVRDRVRALKAVLKPETQVGFHA-HHNLSLAVANSIAAIEAGATRIDASLRGLGA---GAGNA 231 (333)
T ss_pred --ECCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHHHHHHHHHCCCCEEEECCCCCCC---CCCCC
T ss_conf --7596----446899999999999998629975488986-1787729999999998199999762744889---88873
Q ss_pred CHHHHHHHHHHCCCCCC
Q ss_conf 98999999998298532
Q gi|254780485|r 309 SYNKDTILFNRLGLIPD 325 (328)
Q Consensus 309 ~~~~~~~~i~~~G~~P~ 325 (328)
+.|..+.++++.|+..-
T Consensus 232 ~lE~lVa~l~~~g~~tg 248 (333)
T TIGR03217 232 PLEVFVAVLDRLGWNTG 248 (333)
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 49999999961798658
No 94
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.42 E-value=0.00013 Score=50.54 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=109.1
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCC--CHHHHHHHHHHHC
Q ss_conf 645307868342321243354777564100068579999999999649-8389973036888744--2899999887621
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKER--DLSIIVDMIKGVK 133 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~--~~~~~~e~i~~i~ 133 (328)
.+.+ |+.|..+|+|| |+++.-...... ++.+++......+.+.. +.++ +.+||.+...+ .+++++..++.|.
T Consensus 114 Lll~-t~~C~vyCRyC-fRr~~~~~~~~~--~~~~~~~~al~YIa~hPeI~eV-llSGGDPL~ls~~~L~~ll~~L~~Ip 188 (369)
T COG1509 114 LLLV-TGVCAVYCRYC-FRRRFVGQDNQG--FNKEEWDKALDYIAAHPEIREV-LLSGGDPLSLSDKKLEWLLKRLRAIP 188 (369)
T ss_pred EEEE-CCCCCCEEEEC-CCCCCCCCCCCC--CCHHHHHHHHHHHHCCCHHHEE-EECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9996-48664521000-134555666566--7889999999999739516517-74078756368899999999875489
Q ss_pred CC-CCCEE-----EECCCCCHHHHHHHHCCCCCEEEE-ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC-CCEE-E
Q ss_conf 36-88324-----102569999999874157606975-13437777320588889899999999999879855-7707-8
Q gi|254780485|r 134 SL-GLETC-----MTLGMLSFEQAQILSKAGLDYYNH-NIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKV-CCGG-I 204 (328)
Q Consensus 134 ~~-~~~i~-----~~~g~~~~~~~~~Lk~aG~~~~~~-~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~-~sg~-l 204 (328)
.. .+.++ +.+.-.+.+-...|++.+...+.. -+....++ ..+-.++++..+.+|+.+ +-+. +
T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Ei---------t~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEI---------TPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred CEEEEEEECCCCEECHHHHCHHHHHHHHCCCCEEEEECCCCCHHHC---------CHHHHHHHHHHHHCCCEEECCHHEE
T ss_conf 6469986246743154440699999872358607998035883546---------8999999999997595653241011
Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6689899999999999974088886020541120487412445687989999999999996868
Q gi|254780485|r 205 LGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 205 ~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~ 268 (328)
=|..++.+-..+.+..|-+++..|--+. -.-+.+|+ ..-..+..+.++++.-.|=-+..
T Consensus 260 rGVND~~evl~~L~~~L~~~gV~PYYl~--~~D~~~G~---~hfr~~i~~~~~i~~~lr~~~SG 318 (369)
T COG1509 260 RGVNDDPEVLKELSRALFDAGVKPYYLH--QLDLVQGA---AHFRVPIAEGLQIVEELRGRTSG 318 (369)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEE--CCCCCCCC---CCEECCHHHHHHHHHHHHHHCCC
T ss_conf 4667999999999999997488621785--16766772---33514099999999999975777
No 95
>PRK01254 hypothetical protein; Provisional
Probab=98.36 E-value=2.5e-05 Score=55.43 Aligned_cols=203 Identities=15% Similarity=0.206 Sum_probs=111.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCC-----------------------
Q ss_conf 78683423212433547775641000685799999999996--49838997303688-----------------------
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKE--NGATRYCMGAAWRE----------------------- 116 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~--~G~~~~~l~~~~~~----------------------- 116 (328)
--.|--+|+||+...|-. +.-...|.|.|+++++.+.+ -|++...--.||..
T Consensus 379 ~RGCfGgCsFCaIt~HQG---R~IqSRS~eSIl~E~~~i~~k~p~FkG~IsDvGGPTANMy~~~C~~~~~~~~C~r~sCl 455 (742)
T PRK01254 379 MRGCFGGCSFCSITEHEG---RIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLGCKSPKAEQTCRRLSCV 455 (742)
T ss_pred CCCCCCCCCEEEEEECCC---CEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCCHHCCCCCCCCCC
T ss_conf 485445784132230168---63343278999999999996489986776358871365431547981100789997789
Q ss_pred ------CCCCCHHHHHHHHHHHCCC-CC-CEEEECC------CCCHHHHHHHHCCCCCEEE-EECC-CCHHHHHCCC-C-
Q ss_conf ------8744289999988762136-88-3241025------6999999987415760697-5134-3777732058-8-
Q gi|254780485|r 117 ------PKERDLSIIVDMIKGVKSL-GL-ETCMTLG------MLSFEQAQILSKAGLDYYN-HNID-TSERFYPHVT-T- 178 (328)
Q Consensus 117 ------~~~~~~~~~~e~i~~i~~~-~~-~i~~~~g------~~~~~~~~~Lk~aG~~~~~-~~le-t~~~~~~~~~-~- 178 (328)
....+...++++++.+++. ++ .|.+.-| ..+.+.+++|-+.-+..++ +.-| +++....... |
T Consensus 456 ~P~iC~nL~~dH~~~i~Llrk~R~lpGVKkVfI~SGiRyDLa~~d~eylkELv~hHVsGqLKVAPEH~~~~vL~~M~KP~ 535 (742)
T PRK01254 456 YPDICPHLDTDHSPTIDLYRRARDLKGIKKILIASGVRYDLAVEDPEYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPG 535 (742)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCC
T ss_conf 98778888788099999999986289865555312054555533889999999873687066576546858999862998
Q ss_pred CCCHHHHHHHH-HHHHHCCCC--CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC-----------
Q ss_conf 88989999999-999987985--577078668-989999999999997408888602054112048741-----------
Q gi|254780485|r 179 THTFEDRLQTL-ENVRKSGIK--VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK----------- 243 (328)
Q Consensus 179 ~~~~~~~l~~~-~~a~~~G~~--~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~----------- 243 (328)
...|++..+.. +..+++|.+ +..-+|-+| |-|.+|.+++..+|++.+..++.| +-|.|.|+|.
T Consensus 536 ~~~y~rF~~~F~~~sk~~GK~QyLiPYfisaHPG~t~~Dm~~LA~~lk~~~~~peQV--QdF~PTP~t~sT~MYyTg~dP 613 (742)
T PRK01254 536 MGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV--QNFYPSPMANATTMYYTGKNP 613 (742)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHC--EEEECCCCHHHHHHHHCCCCC
T ss_conf 689999999999999985897036877870689989999999999999739997563--120278617888788707786
Q ss_pred C-------CCCCCC-CHHHHHHHHHHHHHHCCCC
Q ss_conf 2-------445687-9899999999999968687
Q gi|254780485|r 244 F-------EENKKV-DPIEHVRIISVARILMPKS 269 (328)
Q Consensus 244 l-------~~~~~~-~~~e~lr~iAi~RL~lP~~ 269 (328)
| +....+ ++.|-.--=|+.|.--|..
T Consensus 614 l~~v~~t~e~V~v~k~~~ek~lqrAll~y~~P~N 647 (742)
T PRK01254 614 LKKVKYKSEDVPVPKGDRQRRLHKALLRYHDPAN 647 (742)
T ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 6455667886236788889999999986348233
No 96
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=98.30 E-value=0.00044 Score=47.00 Aligned_cols=217 Identities=16% Similarity=0.151 Sum_probs=138.3
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEEEE
Q ss_conf 06857999999999964983899730368887442899999887621368832410256-99999998741576069751
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYNHN 165 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~~~ 165 (328)
.++.|+-++.++.+.+.|+.++-+.... ..+.+++++.++.+..+............ ..+..++..+++|++.+.+.
T Consensus 10 ~~~~e~K~~i~~~L~~~Gv~~IEvg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~i~i~ 87 (237)
T pfam00682 10 AFSVEEKLAIARALDEAGVDEIEVGFPF--MSPTDFESVRAIAEVLKKAKIQALLRPVEHDIDAAVEAAKGAGADRVHVF 87 (237)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9899999999999998498989995775--89735999997765025875101000341049999999996799999996
Q ss_pred CCCCHHHHHCCC---CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC
Q ss_conf 343777732058---88898999999999998798557707866898999999999999740888860205411204874
Q gi|254780485|r 166 IDTSERFYPHVT---TTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGS 242 (328)
Q Consensus 166 let~~~~~~~~~---~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt 242 (328)
+-+++.....-. .....+...++++.|++.|+++..+..++.--+.+..++.+..+.+.+. +.|. .++|
T Consensus 88 ~~~se~~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~G~--~~i~------l~DT 159 (237)
T pfam00682 88 IATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVELGCEDAGRTDLAFLIEVVEVAQEAGA--TRIN------IADT 159 (237)
T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEE------ECCC
T ss_conf 1057878998857899999999999999999869905884051232478899999999986198--5797------3686
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHH--CHHHHHHHHHHCCC---EEE--ECCEEECCCCCCHHHHHH
Q ss_conf 12445687989999999999996868721423115651--65689999980998---899--778665158889899999
Q gi|254780485|r 243 KFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMM--SDELQALCFFSGAN---SIF--VGDTLLTAKNPSYNKDTI 315 (328)
Q Consensus 243 ~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~--~~~~~~~~L~~GaN---~~~--~g~~~~t~~g~~~~~~~~ 315 (328)
....+|.+.-.++...|=.+|+..+.+=. --+. +.-....|+.+||+ +++ +|+ .+++.+.|+.+.
T Consensus 160 ----~G~~~P~~v~~lv~~l~~~~~~~~i~~H~-Hn~~Gla~aN~l~A~~aG~~~id~si~GlG~---~~Gn~~te~lv~ 231 (237)
T pfam00682 160 ----VGVLTPNEAADLISALKDRVPPVIIEVHC-HNDLGMAVANSLAAVEAGADRVDGTVNGLGE---RAGNAALEELVA 231 (237)
T ss_pred ----CCCCCHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCHHHHHHHHHHHHCCCEEEECCCCCCC---CCCCHHHHHHHH
T ss_conf ----45579899999999999708987158874-4886729999999999689999877503155---426764999999
Q ss_pred HHHHCC
Q ss_conf 999829
Q gi|254780485|r 316 LFNRLG 321 (328)
Q Consensus 316 ~i~~~G 321 (328)
+++.+|
T Consensus 232 ~L~~~G 237 (237)
T pfam00682 232 ALEVLG 237 (237)
T ss_pred HHHHCC
T ss_conf 998577
No 97
>KOG2876 consensus
Probab=98.27 E-value=2.3e-06 Score=62.28 Aligned_cols=190 Identities=22% Similarity=0.299 Sum_probs=124.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEE
Q ss_conf 78683423212433547775641000685799999999996498389973036888744289999988762136-88324
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL-GLETC 140 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~-~~~i~ 140 (328)
|-.|...|.||.-+..-+. .+...+++.++++..+.....+|....-+. ++.+.-..++..+..-+....+. ...|
T Consensus 18 te~cnlrc~ycMpseg~~l-~pk~~~lav~eilrl~~lF~~qgv~knrLt-ggeptIr~d~~~i~~g~~~l~gLks~~I- 94 (323)
T KOG2876 18 TEKCNLRCQYCMPSEGVPL-KPKRKLLAVSEILRLAGLFAPQGVDKNRLT-GGEPLIRQDIVPIVAGLSSLPGLKSIGI- 94 (323)
T ss_pred HHCCCCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCHHHHCCCHHHHHCE-
T ss_conf 5200731212012007757-641000002446776435667550155405-7887410464310144412300144150-
Q ss_pred EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC---CCCEEEECCCCCHHHHHH
Q ss_conf 1025699999998741576069751343-777732058888989999999999987985---577078668989999999
Q gi|254780485|r 141 MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK---VCCGGILGLGEMIDDRID 216 (328)
Q Consensus 141 ~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~---~~sg~l~G~gEt~eeri~ 216 (328)
.+.|......+-+++++|.+..++.++| .+..|+....+..++.-+.-++.|.++|+. +++-.|=|+.|.. +.+
T Consensus 95 Ttng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~e--i~D 172 (323)
T KOG2876 95 TTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDE--VFD 172 (323)
T ss_pred ECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC--CCC
T ss_conf 126226776617877724340003566555777777763112999998876776507787412256763367870--232
Q ss_pred HHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9999974088886020541120487412445687989999999
Q gi|254780485|r 217 MLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRII 259 (328)
Q Consensus 217 ~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~i 259 (328)
....-| ..+.-|-+--|.|..|+......-.+-.|.+.++
T Consensus 173 fv~~tr---~~p~DVrfIe~mpf~gn~~~t~slipy~e~l~li 212 (323)
T KOG2876 173 FVLLTR---MRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLI 212 (323)
T ss_pred EEEECC---CCCCCEEEEEECCCCCCCCCHHCCCCHHHHHHHH
T ss_conf 133068---9875468899425678721110134488998877
No 98
>PRK00955 hypothetical protein; Provisional
Probab=98.24 E-value=8.3e-05 Score=51.89 Aligned_cols=202 Identities=18% Similarity=0.260 Sum_probs=108.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEE-EECCCC------------------------
Q ss_conf 786834232124335477756410006857999999999964-983899-730368------------------------
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN-GATRYC-MGAAWR------------------------ 115 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~-G~~~~~-l~~~~~------------------------ 115 (328)
--.|--+|+|||...|-.- .-...|.|.|+++|+..... +++... -++|.-
T Consensus 298 hRGCfGgCsFCaIt~HQGr---~I~sRS~~SIl~E~~~~~~~p~FkG~IsDvGGPTANmy~~~C~~~~~~g~C~~~~Cl~ 374 (599)
T PRK00955 298 HRGCFGGCSFCAITFHQGR---FIQSRSKESILREAKELTQMPDFKGYIHDVGGPTANFRKMACKKQEKCGACKNKQCLF 374 (599)
T ss_pred CCCCCCCCCCCCCCCCCCC---CEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCHHHCCCCCCCCCCC
T ss_conf 4762567821022011787---0344488999999999973889877871389824654306479802028899967899
Q ss_pred ----CCCCCCHHHHHHHHHHHCCC-C-CCEEEECCC--------CCHHHHHHHHCCCCCEE-EEECC-CCHHHHHCCC-C
Q ss_conf ----88744289999988762136-8-832410256--------99999998741576069-75134-3777732058-8
Q gi|254780485|r 116 ----EPKERDLSIIVDMIKGVKSL-G-LETCMTLGM--------LSFEQAQILSKAGLDYY-NHNID-TSERFYPHVT-T 178 (328)
Q Consensus 116 ----~~~~~~~~~~~e~i~~i~~~-~-~~i~~~~g~--------~~~~~~~~Lk~aG~~~~-~~~le-t~~~~~~~~~-~ 178 (328)
+....+...++++++.+++. + -++.+.-|. .+.+.+++|-+.-+... .+.-| +++....... |
T Consensus 375 P~~C~nL~~dh~~~~~LLrk~r~lpgVKkvfi~SGiRyDl~l~d~~~~yl~eL~~~HvsGqLKVAPEH~~~~VL~~M~KP 454 (599)
T PRK00955 375 PKPCKNLDVDHTEYLDLLRKVRKLPGVKKVFIRSGIRYDYLLHDKNDEFFKELCEHHVSGQLKVAPEHISDRVLKYMGKP 454 (599)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCC
T ss_conf 98888987883899999999854899767774122655555136886999999977078706757754683788974799
Q ss_pred -CCCHHHHHHHH-HHHHHCCCC--CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC----------
Q ss_conf -88989999999-999987985--577078668-989999999999997408888602054112048741----------
Q gi|254780485|r 179 -THTFEDRLQTL-ENVRKSGIK--VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK---------- 243 (328)
Q Consensus 179 -~~~~~~~l~~~-~~a~~~G~~--~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~---------- 243 (328)
...|++..+.. +..+++|.+ +..-+|-+| |-|.+|.++....|++++..++.| +-|+|.|+|.
T Consensus 455 ~~~~~~~F~~~F~~~~k~~Gk~QylvPY~issHPGct~~dm~~La~~lk~~~~~peQV--QdF~PTP~T~sT~MYyTG~d 532 (599)
T PRK00955 455 SREVYDKFVKKFDRINKKLGKKQFLVPYLMSSHPGSTLEDAIELAEYLKDLGYQPEQV--QDFYPTPGTLSTTMYYTGLD 532 (599)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHC--EEEECCCCHHHHHHHHHCCC
T ss_conf 8189999999999999985897304777881699989999999999999739997773--11007851898889882788
Q ss_pred -CCCCC---CCCHHHHHHHHHHHHHHCCC
Q ss_conf -24456---87989999999999996868
Q gi|254780485|r 244 -FEENK---KVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 244 -l~~~~---~~~~~e~lr~iAi~RL~lP~ 268 (328)
+...+ +-++.|-..--|+.+...|.
T Consensus 533 P~t~~~V~V~k~~~ek~~Qrall~y~~p~ 561 (599)
T PRK00955 533 PLTMEPVYVPKTKEEKAMQRALLQYRNPK 561 (599)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88798502469988999999998404800
No 99
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family. It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD..
Probab=98.21 E-value=4.1e-05 Score=53.95 Aligned_cols=158 Identities=20% Similarity=0.316 Sum_probs=111.3
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCHHH-HHHHHHH
Q ss_conf 6453078683423212433547775---641000685799999999996498-3899730368887442899-9998876
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSK---LKASKLINVDQVLKEAKNAKENGA-TRYCMGAAWREPKERDLSI-IVDMIKG 131 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~---~~~~~~~~~Eei~~~a~~~~~~G~-~~~~l~~~~~~~~~~~~~~-~~e~i~~ 131 (328)
.|. +-.|..+|.|| ||... .......+.|++++..+. ++|. .-|++ +||++.. .+. +.+.++.
T Consensus 20 ~iF--~~GCn~~CpyC----HN~~~~~~~~~~~~~~~e~~~~~L~~--R~~ll~gVVi-tGGEptl---Q~~eL~d~~~~ 87 (220)
T TIGR02495 20 TIF--FQGCNLKCPYC----HNSELLIPRKGSGEIELEELLEFLRR--RQGLLDGVVI-TGGEPTL---QAGELGDFLRE 87 (220)
T ss_pred EEE--ECCCCCCCCCC----CCCCCHHHHCCCCCCCHHHHHHHHHH--CCCCEEEEEE-ECCCHHH---HHHHHHHHHHH
T ss_conf 887--02788998788----88764002005761027779999873--1342105787-2875323---67778999999
Q ss_pred HCC-CCCCEEEECCCCCHHHHHHHHCCC-CCEEEEECCCCHHHHHCCCCC--------------CC----HHHHHHHHHH
Q ss_conf 213-688324102569999999874157-606975134377773205888--------------89----8999999999
Q gi|254780485|r 132 VKS-LGLETCMTLGMLSFEQAQILSKAG-LDYYNHNIDTSERFYPHVTTT--------------HT----FEDRLQTLEN 191 (328)
Q Consensus 132 i~~-~~~~i~~~~g~~~~~~~~~Lk~aG-~~~~~~~let~~~~~~~~~~~--------------~~----~~~~l~~~~~ 191 (328)
+++ .+..|.++..-...+.+++|-+.| +|.+.+.+.+.++.|+.+... .+ ++..++.++.
T Consensus 88 v~~nlGf~vkLdTNG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~~~tnisPsrtPe~l~~~~~~SlEi 167 (220)
T TIGR02495 88 VRENLGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAKKETNISPSRTPEKLLKNILKSLEI 167 (220)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99865927856067886789999986048757875014786567400063321003532468775658999998755675
Q ss_pred HHHCC----CC--CCCEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99879----85--5770786689899999999999974088
Q gi|254780485|r 192 VRKSG----IK--VCCGGILGLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 192 a~~~G----~~--~~sg~l~G~gEt~eeri~~l~~lr~l~~ 226 (328)
+.+.| ++ .=+|+.=++.+..||..+...+|++-..
T Consensus 168 l~~s~GCGGi~fE~RTTV~~~~~~Geed~~ei~~~i~~~~~ 208 (220)
T TIGR02495 168 LLESGGCGGIEFELRTTVVRGLLDGEEDLAEIATRIKENGV 208 (220)
T ss_pred HHHCCCCCCCCCEEECCCCHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 54247868865324456552541652789999976322440
No 100
>KOG2492 consensus
Probab=98.19 E-value=0.00024 Score=48.76 Aligned_cols=224 Identities=14% Similarity=0.133 Sum_probs=126.0
Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-----------------
Q ss_conf 786834232124--3354777564100068579999999999649838997303688874428-----------------
Q gi|254780485|r 62 TGGCPENCGYCN--QSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL----------------- 122 (328)
Q Consensus 62 TN~C~~~C~fCa--f~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~----------------- 122 (328)
--.|.|-|.||- |.+.. . +-...+.|+++++.+.++|.+++-+.+ .+-...++-
T Consensus 227 MRGCdNMCtyCiVpftrGr----e--Rsrpi~siv~ev~~L~~qG~KeVTLLG-QNVNSyrD~s~~~~~~a~~~~~~~GF 299 (552)
T KOG2492 227 MRGCDNMCTYCIVPFTRGR----E--RSRPIESIVEEVKRLAEQGVKEVTLLG-QNVNSYRDNSAVQFSSAVPTNLSPGF 299 (552)
T ss_pred HHCCCCCCCEEEEECCCCC----C--CCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 7564554455877525775----4--577468999999877654740366301-45443344426563247866668884
Q ss_pred ----------HHHHHHHHHHCCCCCCE-----EEECCCCCHHHHHHHHCCCCC-EEEE-ECCC-CHHHHHCCCCCCCHHH
Q ss_conf ----------99999887621368832-----410256999999987415760-6975-1343-7777320588889899
Q gi|254780485|r 123 ----------SIIVDMIKGVKSLGLET-----CMTLGMLSFEQAQILSKAGLD-YYNH-NIDT-SERFYPHVTTTHTFED 184 (328)
Q Consensus 123 ----------~~~~e~i~~i~~~~~~i-----~~~~g~~~~~~~~~Lk~aG~~-~~~~-~let-~~~~~~~~~~~~~~~~ 184 (328)
..+..++..+....++. ..++-....+.+..+++...- ..++ -..+ +.+.......+.+.+.
T Consensus 300 st~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysrea 379 (552)
T KOG2492 300 STVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREA 379 (552)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCHHHHHHHHCCCCHHH
T ss_conf 01211467884089999988652865078736999877739999998817531422425666885489999870578676
Q ss_pred HHHHHHHHHHC--CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC------CHHHH
Q ss_conf 99999999987--985577078668-9899999999999974088886020541120487412445687------98999
Q gi|254780485|r 185 RLQTLENVRKS--GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV------DPIEH 255 (328)
Q Consensus 185 ~l~~~~~a~~~--G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~------~~~e~ 255 (328)
.++-....++. |.-.++-++-|. |||.+|-.+.+-.||..| ++++.++......+|.-..+-.. ..+..
T Consensus 380 yl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVg--Ydv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl 457 (552)
T KOG2492 380 YLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVG--YDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRL 457 (552)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEEEECCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 53477778865888763232574056787277899999999855--3736667765314414556523665177887779
Q ss_pred HHHHHHHHHH---CCCCCCEEEEHHHHHCHHHHHHHHHHCCC
Q ss_conf 9999999996---86872142311565165689999980998
Q gi|254780485|r 256 VRIISVARIL---MPKSRLRLAAGRAMMSDELQALCFFSGAN 294 (328)
Q Consensus 256 lr~iAi~RL~---lP~~~i~i~~~~~~~~~~~~~~~L~~GaN 294 (328)
..++-++|-. +-+..+--..-++..|..-++-.+.+|-|
T Consensus 458 ~~Li~~Fre~A~~~~d~lvgc~Qlvlveg~sKrs~t~~~gr~ 499 (552)
T KOG2492 458 FELITFFREEAIKFNDGLVGCTQLVLVEGKSKRSATDLCGRN 499 (552)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHCCC
T ss_conf 999999999888875358652100011024566688872666
No 101
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.11 E-value=0.00041 Score=47.25 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=90.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CC------CEEEEEECCCCCCCCCCHHHHHHHHHHHCC-C
Q ss_conf 683423212433547775641000685799999999996-49------838997303688874428999998876213-6
Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKE-NG------ATRYCMGAAWREPKERDLSIIVDMIKGVKS-L 135 (328)
Q Consensus 64 ~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~-~G------~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-~ 135 (328)
.|..+|.||+=. +.+ ..+-++..||+..+..+.+ .| ++.+++.+.|++. . -++....+++.+.. .
T Consensus 110 GC~~~C~FCaTg---~~G--~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl-~-N~dnV~~a~~i~~~~~ 182 (349)
T COG0820 110 GCPVGCTFCATG---QGG--LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPL-L-NLDNVVKALEIINDDE 182 (349)
T ss_pred CCCCCCCEECCC---CCC--CEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHH-H-HHHHHHHHHHHHCCCC
T ss_conf 867888726456---666--01121799999999999986176656436469996478606-6-6999999998626766
Q ss_pred CCC-----EEEECCCCCHHHHHHHHC-CCCCEEEEECCC-CHHHHHCCCC---CCCHHHHHHHHHHHHH-CCCCCCC--E
Q ss_conf 883-----241025699999998741-576069751343-7777320588---8898999999999998-7985577--0
Q gi|254780485|r 136 GLE-----TCMTLGMLSFEQAQILSK-AGLDYYNHNIDT-SERFYPHVTT---THTFEDRLQTLENVRK-SGIKVCC--G 202 (328)
Q Consensus 136 ~~~-----i~~~~g~~~~~~~~~Lk~-aG~~~~~~~let-~~~~~~~~~~---~~~~~~~l~~~~~a~~-~G~~~~s--g 202 (328)
++. +.+|..-+. ..+.+|.+ ..--..-+.+-+ ..++...+.| +.+.++-++..+.-.+ .|.+++- .
T Consensus 183 G~~ls~R~iTvSTsGi~-~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~ 261 (349)
T COG0820 183 GLGLSKRRITVSTSGIV-PRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEYV 261 (349)
T ss_pred CCCCCCCEEEEECCCCC-HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 66646517999658875-76899875167758999506899899975332366798899999998622215966899866
Q ss_pred EEECCCCCHHHHHHHHHHHHHC-CCCCCEEECCCEEECCCCCCCC
Q ss_conf 7866898999999999999740-8888602054112048741244
Q gi|254780485|r 203 GILGLGEMIDDRIDMLLTLANL-STPPESIPINLLIPIPGSKFEE 246 (328)
Q Consensus 203 ~l~G~gEt~eeri~~l~~lr~l-~~~~~~v~~~~~~p~~gt~l~~ 246 (328)
++=|...+. +|...|-++ ...+..|-+-||.|.++...+.
T Consensus 262 Ll~~VND~~----e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r 302 (349)
T COG0820 262 LLDGVNDSL----EHAKELAKLLKGIPCKVNLIPYNPVPGSDYER 302 (349)
T ss_pred ECCCCCCCH----HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
T ss_conf 204654888----89999999856897449986068989977447
No 102
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones . Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase . The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin ..
Probab=98.05 E-value=0.00019 Score=49.46 Aligned_cols=262 Identities=18% Similarity=0.267 Sum_probs=163.2
Q ss_pred HHHCCCCCCCCHHHHHHHH----------C-CC-HHHHHHHHHHHHHHHCCC----CEE-EEEE--EEEECCC--CCC-C
Q ss_conf 4200234478999999997----------3-99-189999999998886289----856-9998--6453078--683-4
Q gi|254780485|r 10 ENPTKKPKVWTSKEVFQIY----------N-MP-FNDLLFWSHTVHRKNFEP----NHI-QLSK--LLNIKTG--GCP-E 67 (328)
Q Consensus 10 ~~~~~~~e~ls~eea~~L~----------~-~~-~~el~~~Aa~~~r~~~~g----~~V-~~~~--~in~~TN--~C~-~ 67 (328)
.+.+.+|+..|++|+..+= . .| +-|++..|..-.++.+-+ +.| |+++ .+=+-|- -|+ -
T Consensus 3 ~~~~~sG~~~~k~~le~~K~~~~r~y~L~~G~Ps~seIL~~a~~~~~~~l~~~Lr~KPvRTiSGVAVVAvMTsP~~CPHG 82 (573)
T TIGR01211 3 VDKLLSGKVRDKEDLEDLKLEVSRKYGLSKGVPSNSEILNSAPDEEKKKLEDILRKKPVRTISGVAVVAVMTSPERCPHG 82 (573)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCC
T ss_conf 01122256568888999999999875678898865899962480036788877516996011575200122621688885
Q ss_pred C-----CCCCCCCCC---CCCCCC------------CCCCCCHHHHHHHHHHHHHCCCE----EEEEECCCCCCCCCCHH
Q ss_conf 2-----321243354---777564------------10006857999999999964983----89973036888744289
Q gi|254780485|r 68 N-----CGYCNQSVH---NKSKLK------------ASKLINVDQVLKEAKNAKENGAT----RYCMGAAWREPKERDLS 123 (328)
Q Consensus 68 ~-----C~fCaf~~~---~~~~~~------------~~~~~~~Eei~~~a~~~~~~G~~----~~~l~~~~~~~~~~~~~ 123 (328)
. |-||.=.-. ..+... .+..=+..++....+++.+.|.. ++.+.+|+-+ ..+.+
T Consensus 83 kytGniC~yCPGG~~s~f~~spQSYTG~EPAA~Rg~~~~YDPY~q~~~Rl~QL~~iGHpvdKVElI~MGGTFp--Ard~~ 160 (573)
T TIGR01211 83 KYTGNICLYCPGGPDSDFENSPQSYTGYEPAALRGRQYDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFP--ARDLD 160 (573)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCCHH
T ss_conf 4217876426878866667884875567658999765078856999999999987189816178883078777--88876
Q ss_pred HH----HHHHHHHCCCC-------------------------------------------------------CC--EEEE
Q ss_conf 99----99887621368-------------------------------------------------------83--2410
Q gi|254780485|r 124 II----VDMIKGVKSLG-------------------------------------------------------LE--TCMT 142 (328)
Q Consensus 124 ~~----~e~i~~i~~~~-------------------------------------------------------~~--i~~~ 142 (328)
|- ..++.++...+ .. |.++
T Consensus 161 Yqe~Fv~~~l~Aln~F~yfkd~Dnleeklvr~~~~g~~~~~~e~~~fkraWert~~~~y~~LE~a~r~NE~~~~RcVG~T 240 (573)
T TIGR01211 161 YQEWFVKRCLNALNDFDYFKDIDNLEEKLVRAELKGNSTEVKEDDEFKRAWERTAEKDYVYLEEAIRKNETSKVRCVGLT 240 (573)
T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 77899999997316665346712467788763057654433688732346655304772136889962467686434677
Q ss_pred ----CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHH
Q ss_conf ----25699999998741576069751343-777732058888989999999999987985577078668-989999999
Q gi|254780485|r 143 ----LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRID 216 (328)
Q Consensus 143 ----~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~ 216 (328)
+---.++++.+|-+-|...+.++..| ...++..+..+|+-++-+++-+.++.+|+|++.+||=|+ |=+.|--++
T Consensus 241 ~ETRPDyc~e~~id~ML~~G~TrVElGVQtiy~~i~~~~kRGH~V~~~~~at~llrDaG~KV~yH~MPGlPGs~fErDl~ 320 (573)
T TIGR01211 241 IETRPDYCREEEIDRMLKLGATRVELGVQTIYNDILERIKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLK 320 (573)
T ss_pred ECCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 21588988868899998359848997520726899998378985899999987766504622031175333566356899
Q ss_pred HHHHHHHC-CCCCCEEECCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 99999740-8888602054112048741244------5687989999999999996868721423
Q gi|254780485|r 217 MLLTLANL-STPPESIPINLLIPIPGSKFEE------NKKVDPIEHVRIISVARILMPKSRLRLA 274 (328)
Q Consensus 217 ~l~~lr~l-~~~~~~v~~~~~~p~~gt~l~~------~~~~~~~e~lr~iAi~RL~lP~~~i~i~ 274 (328)
....|=+= ...|+++-|-|-.=..||.|-. -.|-+.+|.+-+||-+-=++|+. ++++
T Consensus 321 ~Fr~~Fedp~FkPDmLKIYPTLV~rGT~LY~lWk~G~Y~PY~~eEaveLiv~~~~~~P~W-vR~~ 384 (573)
T TIGR01211 321 MFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKKIMPKW-VRIQ 384 (573)
T ss_pred HHHHHHCCCCCCCCCEEECCEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-EEEE
T ss_conf 998862687989786156671023476116888678998776789999999999738973-5775
No 103
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.03 E-value=0.0008 Score=45.28 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=92.8
Q ss_pred EEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHH-C--CCEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6453078683423212433547-775641000685799999999996-4--98389973036888744289999988762
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHN-KSKLKASKLINVDQVLKEAKNAKE-N--GATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~-~~~~~~~~~~~~Eei~~~a~~~~~-~--G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328)
-+|. --.|...|.||--+... .......+..-.+.+++.++.-.. . ....+.+++..+ +..+.|.-..+.|.+
T Consensus 32 ~inp-y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TD--pyqp~E~~~~ltR~i 108 (297)
T COG1533 32 TLNP-YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTD--PYQPIEKEYRLTRKI 108 (297)
T ss_pred ECCC-CCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCC--CCCCHHHHHHHHHHH
T ss_conf 3377-4787788841336201466567860554015699999988752467855999854688--885647787899999
Q ss_pred ----CCCCCCEEEEC-CCC---CHHHHHHHHCCCCCEEEEECCCC-HHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf ----13688324102-569---99999987415760697513437-7773205888-89899999999999879855770
Q gi|254780485|r 133 ----KSLGLETCMTL-GML---SFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTT-HTFEDRLQTLENVRKSGIKVCCG 202 (328)
Q Consensus 133 ----~~~~~~i~~~~-g~~---~~~~~~~Lk~aG~~~~~~~let~-~~~~~~~~~~-~~~~~~l~~~~~a~~~G~~~~sg 202 (328)
...+..+.+.. ..+ +-+.+..+..-+.-.+.+-+-|. +++.+.+=|. -+.++|+++++.+.++|++++.
T Consensus 109 lei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v- 187 (297)
T COG1533 109 LEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGL- 187 (297)
T ss_pred HHHHHHCCCCEEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEE-
T ss_conf 9998853996799977741010278998401126518999951684888986589996989999999999987984899-
Q ss_pred EEECC---CCCHHHHHHHHHHHHHCCC
Q ss_conf 78668---9899999999999974088
Q gi|254780485|r 203 GILGL---GEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 203 ~l~G~---gEt~eeri~~l~~lr~l~~ 226 (328)
.++. +.+++|.-+.+....+-+.
T Consensus 188 -~v~PIiP~~~d~e~e~~l~~~~~ag~ 213 (297)
T COG1533 188 -FVAPIIPGLNDEELERILEAAAEAGA 213 (297)
T ss_pred -EEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf -98553078875889999999997577
No 104
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=97.98 E-value=0.0011 Score=44.44 Aligned_cols=195 Identities=14% Similarity=0.169 Sum_probs=110.5
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 98645307868342321243354777564100068579999999999649838997303688874428999998876213
Q gi|254780485|r 55 SKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328)
Q Consensus 55 ~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328)
+..|.+ | .|...|.||--.--+..+ .....++|+..+......+.|++.+-+|+|...| .+-+++++++.+.+
T Consensus 120 SgTVFF-s-gCnfrCVfCQNwdISq~~--~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp---~lp~Ile~l~~~~~ 192 (335)
T COG1313 120 SGTVFF-S-GCNFRCVFCQNWDISQFG--IGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP---HLPFILEALRYASE 192 (335)
T ss_pred CCEEEE-C-CCCEEEEEECCCCCCCCC--CCEEECHHHHHHHHHHHHHHCCCCEEECCCCCCC---CHHHHHHHHHHHHC
T ss_conf 740796-4-760589975576523367--8807569999999999998257621005899987---53899999999742
Q ss_pred CCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHH-----HCC-CCCCCEEEECC
Q ss_conf 6883241025699999998741576069751343-7777320588889899999999999-----879-85577078668
Q gi|254780485|r 135 LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVR-----KSG-IKVCCGGILGL 207 (328)
Q Consensus 135 ~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~-----~~G-~~~~sg~l~G~ 207 (328)
.-+.+.-|.+..++|.++.|... +|-|.-.+.= .++...+.-.-..| +++..+++ +.| +-+---+|=||
T Consensus 193 ~iPvvwNSnmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y---~eVv~rn~~~~~~~~g~~iiRHLVlPgh 268 (335)
T COG1313 193 NIPVVWNSNMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNY---WEVVTRNILEAKEQVGGLIIRHLVLPGH 268 (335)
T ss_pred CCCEEEECCCCCCHHHHHHHHCC-CEEEECCCCCCCHHHHHHHHCCCCH---HHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 79879706874489999986260-2043043246888999986058946---8998899999997427658888734884
Q ss_pred CCC-HHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC----C-CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 989-999999999997408888602054112048741----2-445687989999999999996
Q gi|254780485|r 208 GEM-IDDRIDMLLTLANLSTPPESIPINLLIPIPGSK----F-EENKKVDPIEHVRIISVARIL 265 (328)
Q Consensus 208 gEt-~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~----l-~~~~~~~~~e~lr~iAi~RL~ 265 (328)
.|. -..+ +.+|.+.-. ..+.+|...+.-.+. . +-...++.+|+.+.+-.++=+
T Consensus 269 lecCTkpI---~~wiae~~g--~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~ 327 (335)
T COG1313 269 LECCTKPI---LRWIAENLG--NDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKL 327 (335)
T ss_pred HHHCCHHH---HHHHHHHCC--CCEEEEEHHHCCCHHHHHHCHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 22325899---999997589--870587532216235544244433658999999999999974
No 105
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.88 E-value=0.0029 Score=41.55 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=111.1
Q ss_pred CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CEE--EEEECCCCCCCC--CCHHHHHHHH
Q ss_conf 078683----42321243354777564100068579999999999649---838--997303688874--4289999988
Q gi|254780485|r 61 KTGGCP----ENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG---ATR--YCMGAAWREPKE--RDLSIIVDMI 129 (328)
Q Consensus 61 ~TN~C~----~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G---~~~--~~l~~~~~~~~~--~~~~~~~e~i 129 (328)
+|-.|. ..|.+|++..... ....+.|.+..+..++...- ..+ +.+-++|--..+ -+-+-...++
T Consensus 53 rT~GC~w~~~~gC~MCgY~~d~~-----~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~Il 127 (358)
T COG1244 53 RTRGCRWYREGGCYMCGYPADSA-----GEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYIL 127 (358)
T ss_pred ECCCCCEECCCCCCEECCCCCCC-----CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCCHHHHHHHH
T ss_conf 26883222058722426554668-----8989889999999999997224478754999715665892448879999999
Q ss_pred HHHCCCC--CCEEE--ECCCCCHHHHHHHHCC--CC-CEEEEECCCCHH-HHHC-CCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 7621368--83241--0256999999987415--76-069751343777-7320-5888898999999999998798557
Q gi|254780485|r 130 KGVKSLG--LETCM--TLGMLSFEQAQILSKA--GL-DYYNHNIDTSER-FYPH-VTTTHTFEDRLQTLENVRKSGIKVC 200 (328)
Q Consensus 130 ~~i~~~~--~~i~~--~~g~~~~~~~~~Lk~a--G~-~~~~~~let~~~-~~~~-~~~~~~~~~~l~~~~~a~~~G~~~~ 200 (328)
..+.+.+ -.+.+ -+-..+++.+..+.+. |. -.+.++|||+.+ +... +-.+-++++.++..+.+|+.|+++-
T Consensus 128 ~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vk 207 (358)
T COG1244 128 ERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVK 207 (358)
T ss_pred HHHHHCCCEEEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 99752366027876047101278999999986089538999712447488998765138868999999999997497515
Q ss_pred CEEEECCC--CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC
Q ss_conf 70786689--89999999999997408888602054112048741244
Q gi|254780485|r 201 CGGILGLG--EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328)
Q Consensus 201 sg~l~G~g--Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328)
+-.|+-+. -..+-+.+.+..++.....++.|++++-.-++||-++.
T Consensus 208 tYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~ 255 (358)
T COG1244 208 TYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEK 255 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
T ss_conf 788831653476889999999999743678758844542213109999
No 106
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.85 E-value=0.0032 Score=41.25 Aligned_cols=219 Identities=15% Similarity=0.158 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHCCCCCE
Q ss_conf 0068579999999999649838997303688---8744289999988762136-88324102569999999874157606
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWRE---PKERDLSIIVDMIKGVKSL-GLETCMTLGMLSFEQAQILSKAGLDY 161 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~---~~~~~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~~~~~Lk~aG~~~ 161 (328)
..++.|+-++.++.+.+.|+.++-.++-..+ |...+.+. .++.+... +... +.-..+...+++-.++|++.
T Consensus 21 ~~~s~e~K~~ia~~L~~~Gv~~IEvgsfvspk~vP~~~d~~e---v~~~i~~~~~~~~--~~l~~n~~g~~~A~~~g~~~ 95 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAE---VMAGIQRRPGVTY--AALTPNLKGLEAALAAGADE 95 (287)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCHHH---HHHHHHCCCCCEE--EEECCCHHHHHHHHHCCCCE
T ss_conf 984999999999999984999999668778230213167999---9987640679678--66436404279999779898
Q ss_pred EEEECCCCHHHHHC-CCCC--CCHHHHHHHHHHHHHCCCCCCC--EEEECC---CC-CHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 97513437777320-5888--8989999999999987985577--078668---98-99999999999974088886020
Q gi|254780485|r 162 YNHNIDTSERFYPH-VTTT--HTFEDRLQTLENVRKSGIKVCC--GGILGL---GE-MIDDRIDMLLTLANLSTPPESIP 232 (328)
Q Consensus 162 ~~~~let~~~~~~~-~~~~--~~~~~~l~~~~~a~~~G~~~~s--g~l~G~---gE-t~eeri~~l~~lr~l~~~~~~v~ 232 (328)
+.+.+-+++..... ...+ ..++.-.++++.|++.|+++.. .+.||- +. ..+..++.+..+.+.+.. .|
T Consensus 96 i~i~~~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~~~~~~~~l~~~~~~~~~~Ga~--~I- 172 (287)
T PRK05692 96 VAVFASASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCD--EI- 172 (287)
T ss_pred EEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC--EE-
T ss_conf 999974179999987479999999999999999997698799987401367646864899999999999857997--85-
Q ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHH--HCHHHHHHHHHHCCC---EEEE--C------
Q ss_conf 54112048741244568798999999999999686872142311565--165689999980998---8997--7------
Q gi|254780485|r 233 INLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAM--MSDELQALCFFSGAN---SIFV--G------ 299 (328)
Q Consensus 233 ~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~--~~~~~~~~~L~~GaN---~~~~--g------ 299 (328)
-.++| ....+|.+.-+++...|=.+|...+.+-. --+ ++.-....|+.+||+ +++- |
T Consensus 173 -----~laDT----~G~a~P~~v~~~i~~v~~~~~~~~i~~H~-Hnd~Gma~AN~laAv~aGa~~vd~tv~GlGgcPfap 242 (287)
T PRK05692 173 -----SLGDT----IGVGTPGQVRRVLEAVLAEFPAERLAGHF-HDTYGQALANIYASLEEGITVFDASVGGLGGCPYAP 242 (287)
T ss_pred -----ECCCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf -----44765----56669999999999999866887235674-487306999999999809998988554777999999
Q ss_pred CEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 86651588898999999998298532
Q gi|254780485|r 300 DTLLTAKNPSYNKDTILFNRLGLIPD 325 (328)
Q Consensus 300 ~~~~t~~g~~~~~~~~~i~~~G~~P~ 325 (328)
| .+++.+.|+.+.+++++|+.--
T Consensus 243 ~---~aGN~~tE~lv~~l~~~G~~Tg 265 (287)
T PRK05692 243 G---ATGNVATEDVLYMLHGLGIETG 265 (287)
T ss_pred C---CCCCHHHHHHHHHHHHCCCCCC
T ss_conf 8---7678669999999996599669
No 107
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=97.79 E-value=0.0038 Score=40.79 Aligned_cols=185 Identities=13% Similarity=0.104 Sum_probs=122.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 683423212433547775641000685799999999996-----498389973036888744289999988762136883
Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKE-----NGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138 (328)
Q Consensus 64 ~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~-----~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~ 138 (328)
.|...|..=|... ..+.++.||+++++..-.. .|.-. + +||+ |. ...+.+.++++..|+.+++
T Consensus 2 rca~~Cp~~A~~~-------~G~~~tveel~~~i~kd~~fy~~SgGGVT--~-SGGE-pl-~Q~~F~~ellk~~k~~gih 69 (213)
T PRK10076 2 RDADECPSGAFER-------IGRDISLDALEREVMKDDIFFRTSGGGVT--L-SGGE-VL-MQAEFATRFLQRLRLWGVS 69 (213)
T ss_pred CCHHHCHHHHHHH-------HCEEEEHHHHHHHHHHHHHHHHCCCCEEE--E-ECCH-HH-CCHHHHHHHHHHHHHCCCC
T ss_conf 8556787788875-------26681099999999971999824798078--6-0752-63-5999999999999866998
Q ss_pred EEE-ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC--EEEECCCCCHHHH
Q ss_conf 241-025699999998741576069751343-777732058888989999999999987985577--0786689899999
Q gi|254780485|r 139 TCM-TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCC--GGILGLGEMIDDR 214 (328)
Q Consensus 139 i~~-~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~s--g~l~G~gEt~eer 214 (328)
.++ +.|..+.+.+.++... +|.+...+.. .++.+.+. ++.+.+..++-++.+.+.|.++-. -+|=|.-.+.++.
T Consensus 70 taieTsG~~~~~~~~~~~~~-~Dl~L~DiK~~d~~~h~~~-TG~~n~~il~Nl~~l~~~~~~v~iR~pvIPg~nd~~e~i 147 (213)
T PRK10076 70 CAIETAGDAPASKLLPLAKL-CDEVLFDLKIMDATQARDV-VKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENM 147 (213)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCEEEEEECCCCHHHHHHH-HCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH
T ss_conf 89976888889999999984-5989986177984899999-799939999999999967996899886779978999999
Q ss_pred HHHHHHHHHCCCCCCEEECCCEEECC---------CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999997408888602054112048---------741244568798999999999999
Q gi|254780485|r 215 IDMLLTLANLSTPPESIPINLLIPIP---------GSKFEENKKVDPIEHVRIISVARI 264 (328)
Q Consensus 215 i~~l~~lr~l~~~~~~v~~~~~~p~~---------gt~l~~~~~~~~~e~lr~iAi~RL 264 (328)
-.....+++++. ..|-+-|+++.- .=++++.++++.++..+..-+++-
T Consensus 148 ~~~~~f~~~l~v--~~veLLPYH~~G~~Ky~~Lg~~Y~l~~~~~p~~e~~~~~~~i~~~ 204 (213)
T PRK10076 148 QQALDVLIPLNI--RQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAER 204 (213)
T ss_pred HHHHHHHHHCCC--CEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999998699--779971884130799999788787789998599999999999996
No 108
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=97.78 E-value=0.0018 Score=42.92 Aligned_cols=195 Identities=11% Similarity=0.263 Sum_probs=100.9
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HC---------CCEEEEEECCCCCCCCC
Q ss_conf 569998645307868342321243354777564100068579999999999-64---------98389973036888744
Q gi|254780485|r 51 HIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK-EN---------GATRYCMGAAWREPKER 120 (328)
Q Consensus 51 ~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~-~~---------G~~~~~l~~~~~~~~~~ 120 (328)
+.|+|.--=+ +|..+|.||+ ..+.+..+- |..-||+..+-.+. .. .++.+++.|-|+ |..
T Consensus 120 k~TvCVSsQv---GC~~~C~FC~---T~~gGf~RN--L~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGE-PL~- 189 (378)
T TIGR00048 120 KATVCVSSQV---GCALGCTFCA---TAKGGFNRN--LEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGE-PLL- 189 (378)
T ss_pred CCCEEEEECC---CCCCCCCCCC---CCCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC-CCC-
T ss_conf 7626871023---5422551033---457875214--51033899999999983455777665404788746787-101-
Q ss_pred CHHHHHHHHHHHCC-CC--C---CEEEE-CCCCCHHHHHHHHCCCCCE-EEEECCC-CHHHHHCCCC---CCCHHHHHHH
Q ss_conf 28999998876213-68--8---32410-2569999999874157606-9751343-7777320588---8898999999
Q gi|254780485|r 121 DLSIIVDMIKGVKS-LG--L---ETCMT-LGMLSFEQAQILSKAGLDY-YNHNIDT-SERFYPHVTT---THTFEDRLQT 188 (328)
Q Consensus 121 ~~~~~~e~i~~i~~-~~--~---~i~~~-~g~~~~~~~~~Lk~aG~~~-~~~~let-~~~~~~~~~~---~~~~~~~l~~ 188 (328)
-++.++.+++.+.. .+ + .|.+| .|.... +..|.+--++- +-+.|=. ..++...+.| +..-++-|+.
T Consensus 190 Nl~~vv~a~ei~n~~~g~~is~r~~T~STsGv~~k--i~~Lad~~l~V~lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~ 267 (378)
T TIGR00048 190 NLNEVVKALEILNDDVGLGISKRRITISTSGVVPK--IDELADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAA 267 (378)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH--HHHHCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCHHHHHHH
T ss_conf 17999999998742220365673378873571458--8885132110334455328871124440650014786799999
Q ss_pred HH-HHHHCCC---CCCC--EEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99-9998798---5577--07866898999999999999740888860205411204874124456879899999999
Q gi|254780485|r 189 LE-NVRKSGI---KVCC--GGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIIS 260 (328)
Q Consensus 189 ~~-~a~~~G~---~~~s--g~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iA 260 (328)
++ +..+.|- +++- .|+=|.-+..+|--+.+..|+..+- -|-+-||.|+|+.++...+.-....|.+++.
T Consensus 268 vr~Y~~~~~~n~GRV~fEY~Ll~~vND~~~HA~~La~lL~g~~c---kvNLIP~NP~~e~~Y~R~s~~~i~~F~~~L~ 342 (378)
T TIGR00048 268 VRRYLEKTGRNQGRVTFEYVLLDGVNDQVEHAEELAELLKGVKC---KVNLIPFNPFPEADYERPSNEQIDRFAKVLK 342 (378)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC---EEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98758642767772688742002468858899999998569985---0401213787988888880889999999862
No 109
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.51 E-value=0.007 Score=38.96 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 0786834232124335477756410006857999999999-964983899730368887442899999887621368832
Q gi|254780485|r 61 KTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNA-KENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLET 139 (328)
Q Consensus 61 ~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~-~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i 139 (328)
.+=.|...|.||--+..+.-...+..+++++++.+...++ +++|+..+-+. |.++. . --+.+++.|....+.- .+
T Consensus 47 D~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiS-G~EP~-l-~~EHvlevIeLl~~~t-Fv 122 (228)
T COG5014 47 DTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRIS-GAEPI-L-GREHVLEVIELLVNNT-FV 122 (228)
T ss_pred CCCCCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCC-C-CHHHHHHHHHHCCCCE-EE
T ss_conf 3135331238766666038722130215979999999999885588689962-89864-4-6899999998634764-99
Q ss_pred EEECCCC---CHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC--CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH
Q ss_conf 4102569---9999998741576069751343-7777320588--88989999999999987985577078668989999
Q gi|254780485|r 140 CMTLGML---SFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT--THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDD 213 (328)
Q Consensus 140 ~~~~g~~---~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~--~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~ee 213 (328)
.-+.|.+ +..-.+.|.+.--.-+-..+.. .|+-|.++.. ..-+..-|++++..|+-|+..-.-+++++ ..||
T Consensus 123 lETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f--~~Ed 200 (228)
T COG5014 123 LETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDF--FRED 200 (228)
T ss_pred EEECCEEEECCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHCC--CHHH
T ss_conf 97577688358889999713786399998357988998987568927899999999999846716510143203--5136
Q ss_pred HHH-HHHHHHHCCCCCCEE
Q ss_conf 999-999997408888602
Q gi|254780485|r 214 RID-MLLTLANLSTPPESI 231 (328)
Q Consensus 214 ri~-~l~~lr~l~~~~~~v 231 (328)
... ....|-+....|+.+
T Consensus 201 ~~k~Lak~Lgehp~~P~~i 219 (228)
T COG5014 201 GLKELAKRLGEHPPIPCRI 219 (228)
T ss_pred HHHHHHHHHCCCCCCCCCE
T ss_conf 6899998754389998524
No 110
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=97.38 E-value=0.014 Score=36.88 Aligned_cols=135 Identities=20% Similarity=0.189 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHCCCC
Q ss_conf 06857999999999964---983899730368887442899999887621368832410----25699999998741576
Q gi|254780485|r 87 LINVDQVLKEAKNAKEN---GATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMT----LGMLSFEQAQILSKAGL 159 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~---G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~----~g~~~~~~~~~Lk~aG~ 159 (328)
..+...++.++...... -...+-+.+|| +++ -+-++.++++.+...++.+|+- -|.-+.+....|-+.|+
T Consensus 53 F~pl~~v~~~v~~~L~f~~~~~~kitISgGG-D~S--cYP~l~eL~~~l~~~~lpiHLGYTSGKGfd~~~~a~~li~~Gv 129 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGRDTKVTISGGG-DVS--CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGV 129 (404)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCC-CCC--CCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCC
T ss_conf 7697999999998634567772289980798-844--1631999999998669835741237889898799999996797
Q ss_pred CEEEEE-CCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEE-CCCCCHHHHHHHHHHHHHCCC
Q ss_conf 069751-3437777320588889899999999999879855-770786-689899999999999974088
Q gi|254780485|r 160 DYYNHN-IDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKV-CCGGIL-GLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 160 ~~~~~~-let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~-~sg~l~-G~gEt~eeri~~l~~lr~l~~ 226 (328)
+.+..- +-|.|.+.++-....+++.-|++++..-+.= .+ ++.+++ |. -.-+.....+..|.+.++
T Consensus 130 ~EVtfTVFatDp~LR~ewM~D~~pE~SL~~L~~fc~~c-ev~~A~ViiPGV-NDGevL~kT~~~Le~wGa 197 (404)
T TIGR03278 130 REVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESC-EVHAASVIIPGV-NDGDVLWKTCADLESWGA 197 (404)
T ss_pred CEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHEEEEEEECCC-CCHHHHHHHHHHHHHHCC
T ss_conf 37999986089899998716998688999999998441-113789980686-856999999999998387
No 111
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=97.27 E-value=0.019 Score=36.11 Aligned_cols=231 Identities=15% Similarity=0.155 Sum_probs=127.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHCCC--CCCEEEECC----CCCHHH
Q ss_conf 775641000685799999999996498389973036--888744289999988762136--883241025----699999
Q gi|254780485|r 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW--REPKERDLSIIVDMIKGVKSL--GLETCMTLG----MLSFEQ 150 (328)
Q Consensus 79 ~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~--~~~~~~~~~~~~e~i~~i~~~--~~~i~~~~g----~~~~~~ 150 (328)
|++.+. --.++|||.+.|....+.|+.-+++-.-. ..-+..+.+.|.+++..|++. ++.++++.| ...++.
T Consensus 15 k~~~P~-lP~Tp~Eia~~A~~c~~AGAsivH~HvRd~~dG~~s~d~~~y~e~i~~Ir~~~pd~ii~~Ttg~~~~~~~eeR 93 (274)
T pfam05853 15 PSDSPA-LPVTPEEIAEEAVAAAEAGAAIVHLHVRDPEDGRPSQDPELFREVLERIREAVPDVIINLTTGGSPGMTVEER 93 (274)
T ss_pred CCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH
T ss_conf 233999-9899899999999999708738998844788899068899999999999987899689945787788988899
Q ss_pred HHHHHCCCCCEEEEECCCCH-HHH-HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99874157606975134377-773-2058888989999999999987985577078668989999999999997408888
Q gi|254780485|r 151 AQILSKAGLDYYNHNIDTSE-RFY-PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPP 228 (328)
Q Consensus 151 ~~~Lk~aG~~~~~~~let~~-~~~-~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~ 228 (328)
++-+.....+...+++.+.. ..+ ....-..+++.-.+..+...+.|++.-. .+|-.| -+..+..+.+.+..+
T Consensus 94 ~~~v~~~~Pd~aSl~~gs~nf~~~~~d~v~~n~~~~~~~~~~~~~~~gi~pe~-e~yd~g-----~l~~~~~l~~~G~l~ 167 (274)
T pfam05853 94 LAPVEALRPEMASLNMGSMNFGLYSRDMVFPNTPADVEEFAARMQEAGVKPEF-ECFDVG-----HLRNAARLLKRGLLK 167 (274)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEE-EEECHH-----HHHHHHHHHHHCCCC
T ss_conf 99998609885774466643565677720139999999999999985991499-997799-----999999999708889
Q ss_pred CEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC-EEEECCEEECCCC
Q ss_conf 602054112048741244568798999999999999686872142311565165689999980998-8997786651588
Q gi|254780485|r 229 ESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN-SIFVGDTLLTAKN 307 (328)
Q Consensus 229 ~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN-~~~~g~~~~t~~g 307 (328)
.-..+++. -|.+- ..+.+++...-++. .+|.......++.....-.....++..|.+ .+=.||++--.+|
T Consensus 168 ~p~~~~~v---lG~~~--g~~~~p~~L~~~l~----~lp~~~~w~v~~~G~~~~~~~~~A~~~GGhvRVGlEDn~~~~~G 238 (274)
T pfam05853 168 GPLFVQFV---LGVLG--GMPADPENLLHMLR----TLPRGATWSVAGIGRNQLPLAAAAAALGGHVRVGLEDNLYLDKG 238 (274)
T ss_pred CCCEEEEE---ECCCC--CCCCCHHHHHHHHH----CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC
T ss_conf 99579999---62687--89999999999996----38789718999517544499999998099648705655337899
Q ss_pred C-------CHHHHHHHHHHCCCCCC
Q ss_conf 8-------98999999998298532
Q gi|254780485|r 308 P-------SYNKDTILFNRLGLIPD 325 (328)
Q Consensus 308 ~-------~~~~~~~~i~~~G~~P~ 325 (328)
. -+++..++++++|+.|.
T Consensus 239 ~~A~sNaelV~~~~~ia~~~gr~iA 263 (274)
T pfam05853 239 VLAPSNAQLVERAVRIARELGREVA 263 (274)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 8896889999999999998599989
No 112
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=97.24 E-value=0.02 Score=35.89 Aligned_cols=183 Identities=13% Similarity=0.207 Sum_probs=99.9
Q ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHC---CC-----------------EEEEEECCCCCCCCC
Q ss_conf 68342321243354777564---10006857999999999964---98-----------------389973036888744
Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKLK---ASKLINVDQVLKEAKNAKEN---GA-----------------TRYCMGAAWREPKER 120 (328)
Q Consensus 64 ~C~~~C~fCaf~~~~~~~~~---~~~~~~~Eei~~~a~~~~~~---G~-----------------~~~~l~~~~~~~~~~ 120 (328)
.|.+.|.||= |+...+.. ...+-++|+|++.+...+.. |. +|+.|...|++..
T Consensus 67 ~C~~~CvfCW--R~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~~EA~~p~H~AiSL~GEPtl-- 142 (321)
T PRK13762 67 WCNQRCLFCW--RPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKFEEALEPKHVAISLSGEPTL-- 142 (321)
T ss_pred HHHCCCEEEC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHEEHHHCCCCCC--
T ss_conf 7744485656--899888766677888898999999999999997305899998989998727910010220488632--
Q ss_pred CHHHHHHHHHHHCCCCCCEE-EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCC---CCHHHHHHHHHHHHHC
Q ss_conf 28999998876213688324-1025699999998741576069751343-77773205888---8989999999999987
Q gi|254780485|r 121 DLSIIVDMIKGVKSLGLETC-MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTT---HTFEDRLQTLENVRKS 195 (328)
Q Consensus 121 ~~~~~~e~i~~i~~~~~~i~-~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~---~~~~~~l~~~~~a~~~ 195 (328)
+.++-+.|+..++.++... ++.|.. .+.+++|... ..+..+.++. .++.|.+++.. ..|+.++++++..++.
T Consensus 143 -YP~l~eLi~~~h~r~~stFLVTNg~~-P~~l~~l~~~-PTQLYvSldAp~~e~~k~i~rPl~~d~Wer~~~sL~~L~~~ 219 (321)
T PRK13762 143 -YPRLPELIEEFHKRGFTTFLVTNGTR-PDVLEKLEAE-PTQLYVSLDAPDKETYNRINRPVIPDAWERILETLELLPSK 219 (321)
T ss_pred -CHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHCCCC-CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf -02189999999857983799828989-8999856676-54279980069999999861655331899999999975437
Q ss_pred CCCCC--CEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEE--CCCCCCCCCCCCCHHHHHH
Q ss_conf 98557--70786689899999999999974088886020541120--4874124456879899999
Q gi|254780485|r 196 GIKVC--CGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIP--IPGSKFEENKKVDPIEHVR 257 (328)
Q Consensus 196 G~~~~--sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p--~~gt~l~~~~~~~~~e~lr 257 (328)
+=++. .|++=|...+..+-.. .|-++. .|++|-+-.+.. ..-..|.....|.-+|...
T Consensus 220 ~~RTV~R~TLVkg~Nm~~~~~yA---~Li~~~-~P~FIEvK~ym~~G~Sr~rLt~~nmP~heEV~~ 281 (321)
T PRK13762 220 KTRTVIRITLVKGLNMTDPEGYA---KLIERA-NPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVRE 281 (321)
T ss_pred CCCEEEEEEEECCCCCCCHHHHH---HHHHHC-CCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHH
T ss_conf 98759999876565767989999---999854-998798711798426777677223998899999
No 113
>pfam10113 Fibrillarin_2 Fibrillarin-like archaeal protein. Members of this family of proteins include archaeal fibrillarin homologs.
Probab=97.02 E-value=0.0084 Score=38.45 Aligned_cols=105 Identities=23% Similarity=0.347 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89899999999999879855770786689899999999999974088886020541120487412445687989999999
Q gi|254780485|r 180 HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRII 259 (328)
Q Consensus 180 ~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~i 259 (328)
.+.++--++.+.|++.|--+.+ |+=.|+..+|.+.-+..--++++.. |+ .+|.||..... ....+.|.+
T Consensus 203 Apl~Eme~Va~~A~k~gkGvEa--I~hiGDGyDdLI~G~~a~~dl~vDv-------fV-vEGgPFNrakd-rl~aFakaV 271 (505)
T pfam10113 203 APLDEMKEVAETARKYGKGVEA--IFHVGDGYDDLITGLKAALDLDVDV-------FV-VEGGPFNRAKD-RLKAFARAV 271 (505)
T ss_pred CCHHHHHHHHHHHHHHCCCCEE--EEEECCCHHHHHHHHHHHHHCCCCE-------EE-EECCCCCCCCC-HHHHHHHHH
T ss_conf 8879999999999984878348--9971477488999999876158758-------99-80787654433-689999888
Q ss_pred HHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC
Q ss_conf 9999968687214231156516568999998099889977
Q gi|254780485|r 260 SVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328)
Q Consensus 260 Ai~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328)
|++||+.|...+.--+..| +-...+|.+|-|.|++|
T Consensus 272 a~sRIL~~G~VVaTNGAYE----dEcRiGLRsGLN~iitG 307 (505)
T pfam10113 272 AASRILVPGKVVATNGAYE----DECRVGLRAGLNAILTG 307 (505)
T ss_pred HHHHEECCCCEEECCCCHH----HHHHHHHHHCCCEEECC
T ss_conf 8751000684873276107----77888776144311116
No 114
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=96.70 E-value=0.0078 Score=38.66 Aligned_cols=88 Identities=16% Similarity=0.319 Sum_probs=50.8
Q ss_pred EEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 453078683423212433-5477756410006857999999999964983899730368887442899999887621368
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQS-VHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLG 136 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~-~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~ 136 (328)
+.+....|..+|.||-=. .-..........++.++|.+++.........++++ +||++....+ +.+.++.+++.+
T Consensus 25 vFvR~~GCnl~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~V~i-TGGEPllq~~---~~~L~~~l~~~g 100 (238)
T TIGR03365 25 MFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSL-SGGNPALQKP---LGELIDLGKAKG 100 (238)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE-CCCCHHHHCC---HHHHHHHHHHCC
T ss_conf 999408989867658988761787887756378999999999834898618994-5998344418---999999998579
Q ss_pred CCEEEE-CCCCCHH
Q ss_conf 832410-2569999
Q gi|254780485|r 137 LETCMT-LGMLSFE 149 (328)
Q Consensus 137 ~~i~~~-~g~~~~~ 149 (328)
..+.+. .|.+..+
T Consensus 101 ~~v~iETnGt~~~~ 114 (238)
T TIGR03365 101 YRFALETQGSVWQD 114 (238)
T ss_pred CEEEEECCCCCCCC
T ss_conf 84999789987600
No 115
>PRK00915 2-isopropylmalate synthase; Validated
Probab=96.54 E-value=0.074 Score=32.11 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=8.2
Q ss_pred HHHHCCCCCCCEEEECCCC
Q ss_conf 9998798557707866898
Q gi|254780485|r 191 NVRKSGIKVCCGGILGLGE 209 (328)
Q Consensus 191 ~a~~~G~~~~sg~l~G~gE 209 (328)
.|-++|-.--.|-+.|+||
T Consensus 216 aAv~AGA~~V~~TvnGiGE 234 (511)
T PRK00915 216 AAVEGGARQVECTINGIGE 234 (511)
T ss_pred HHHHHCCCCEEEEEECCCC
T ss_conf 9998390501016960255
No 116
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=96.49 E-value=0.079 Score=31.91 Aligned_cols=204 Identities=15% Similarity=0.160 Sum_probs=115.9
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE----EEECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 7868342---3212433547775641000685799999999996498389----97303688874428999998876213
Q gi|254780485|r 62 TGGCPEN---CGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRY----CMGAAWREPKERDLSIIVDMIKGVKS 134 (328)
Q Consensus 62 TN~C~~~---C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~----~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328)
...|... |.||..+-.-. .. .......+.++... +.|...- ..+++++++... -.+.+.++..+.
T Consensus 34 ~~~c~~~~~~C~~cy~~v~~~---~~-~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~d~~c~--p~le~~~~r~~~ 105 (414)
T COG1625 34 CKDCIPYRFGCDDCYLSVNEL---DT-GFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNGDTFCY--PDLEPRGRRARL 105 (414)
T ss_pred CCCCCCCCCCCCCEEEEEECC---CC-CCCCHHHHHCCCCC--CCCCCCCCCCCEEECCCCCCCCC--CCHHHHHHHHHH
T ss_conf 876877643502100588515---67-77887674235343--32433000112011279986657--311126667876
Q ss_pred CC----CCEEEEC--CCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 68----8324102--5699999998741576069751343-777732058888989999999999987985577078668
Q gi|254780485|r 135 LG----LETCMTL--GMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL 207 (328)
Q Consensus 135 ~~----~~i~~~~--g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~ 207 (328)
.. ..+.-.. |.......+++.++|++.+...+-| .|++.++........+.++.+++..+.++.+-+-+++=.
T Consensus 106 ~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl~P 185 (414)
T COG1625 106 YYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVLCP 185 (414)
T ss_pred HCCCCCCEEEEEECCCEECCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEEECC
T ss_conf 15884403565312630154268999976998069999608989999986398677899999999975311356799857
Q ss_pred CCC-HHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCC-CEEEE
Q ss_conf 989-999999999997408888602054112048741244--568798999999999999686872-14231
Q gi|254780485|r 208 GEM-IDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE--NKKVDPIEHVRIISVARILMPKSR-LRLAA 275 (328)
Q Consensus 208 gEt-~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~--~~~~~~~e~lr~iAi~RL~lP~~~-i~i~~ 275 (328)
|-. -++.-+.+..|.+++. +.++++.+.|+--|.... .+++++.+..++-.+.|=+.-... +.+++
T Consensus 186 GvNdge~L~kT~~dL~~~g~--~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V~g 255 (414)
T COG1625 186 GVNDGEELEKTLEDLEEWGA--HEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRVTG 255 (414)
T ss_pred CCCCHHHHHHHHHHHHHHCC--CCEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 85757779999999997286--73368986312115237777787787899999999999997538669837
No 117
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=96.20 E-value=0.11 Score=30.84 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-EECCCCCCCCCCHHHHHHHHHHH-CCCCCCEE
Q ss_conf 86834232124335477756410006857999999999964983899-73036888744289999988762-13688324
Q gi|254780485|r 63 GGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYC-MGAAWREPKERDLSIIVDMIKGV-KSLGLETC 140 (328)
Q Consensus 63 N~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~-l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~ 140 (328)
.-|.|+|-||=..--+++-.+..|..++| .|+. +++..-+...-.-+.+..+++.. ....+.+|
T Consensus 82 r~C~N~C~FCFidQlP~GmR~sLY~KDDD--------------yRLSFL~GNfiTLTNl~e~D~~RIi~~rLSPl~ISVH 147 (433)
T TIGR03279 82 IQCNNRCPFCFIDQQPPGKRESLYLKDDD--------------YRLSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYVSVH 147 (433)
T ss_pred HHCCCCCCEEEECCCCCCCCCCEEEECCC--------------EEEEEECCCEEEEECCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 33177785686466885554641462486--------------3453201525765179989999999825786389986
Q ss_pred EECC------------CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCC-CHHHHHHHHHHHHHCC------CCCCC
Q ss_conf 1025------------699999998741576069751343777732058888-9899999999999879------85577
Q gi|254780485|r 141 MTLG------------MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVRKSG------IKVCC 201 (328)
Q Consensus 141 ~~~g------------~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~-~~~~~l~~~~~a~~~G------~~~~s 201 (328)
++-. ...-+.+++|.++|+....= -.+||+. +.++--+|++...++. +.+-+
T Consensus 148 aT~pelR~~mL~n~~ag~il~~l~~L~~~gI~~h~Q---------IVLCPGiNDG~~L~rTi~DL~~~~~~~~P~v~Sva 218 (433)
T TIGR03279 148 ATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQ---------VVVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVA 218 (433)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE---------EEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 399899999876995789999999999769879847---------99879967669999899999986124688425777
Q ss_pred EEEECCC-----------CCHHHHHHHHHHHHHCC
Q ss_conf 0786689-----------89999999999997408
Q gi|254780485|r 202 GGILGLG-----------EMIDDRIDMLLTLANLS 225 (328)
Q Consensus 202 g~l~G~g-----------Et~eeri~~l~~lr~l~ 225 (328)
=.-+|+- -|.++-.+.+..+...|
T Consensus 219 vVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ve~~Q 253 (433)
T TIGR03279 219 VVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQ 253 (433)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 88324213578999872189999999999999999
No 118
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.19 E-value=0.12 Score=30.81 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=120.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHCCCCCEEE
Q ss_conf 0068579999999999649838997303688874428999998876213688--32410256999999987415760697
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL--ETCMTLGMLSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~--~i~~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328)
..++.|+-++.++.+.+.|+.++-.+ .......+. +.++.+.+.++ .+.. ......+.+....++|++.+.
T Consensus 21 ~~fs~~~K~~ia~~L~~~GV~~IEvG--~P~~~~~e~----~~~~~i~~~~l~~~i~~-~~R~~~~di~~a~~~g~~~v~ 93 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG--FPAVSEDEK----EAIKAIAKLGLNASILA-WNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCHH----HHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCCCEEE
T ss_conf 99999999999999998198999994--777783489----99999985679845887-403578779999857969899
Q ss_pred EECCCCHHHHHCCCCCCCHHH----HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC
Q ss_conf 513437777320588889899----9999999998798557707866898999999999999740888860205411204
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFED----RLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~----~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328)
+.+-+++......- +.+.++ -.++++.|++.|+.+..+..-+.--.++..++.+..+.+.+. +.| -.
T Consensus 94 i~~~~Sd~h~~~~l-~~t~~e~l~~~~~~v~~Ak~~Gl~v~f~~eD~~r~~~~~l~~~~~~a~~~Ga--d~I------~l 164 (378)
T PRK11858 94 IFIATSDIHLKYKL-KKTREEVLERLVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEAAKAAEEAGA--DRV------RF 164 (378)
T ss_pred EEECCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEE------EE
T ss_conf 99606799999996-8998999999999999999769869994401256899999999999997499--899------96
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHC--HHHHHHHHHHCCC---EEE--ECCEEECCCCCCHHH
Q ss_conf 874124456879899999999999968687214231156516--5689999980998---899--778665158889899
Q gi|254780485|r 240 PGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMS--DELQALCFFSGAN---SIF--VGDTLLTAKNPSYNK 312 (328)
Q Consensus 240 ~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~--~~~~~~~L~~GaN---~~~--~g~~~~t~~g~~~~~ 312 (328)
++| ....+|.+.-+++.-.|-..| ..+.+-+ --+.| .-..-.|+.+||+ +++ +|| .+++.+.++
T Consensus 165 ~DT----~G~~~P~~v~~~v~~l~~~~~-~~i~~H~-HNd~GlAvANalaAv~AGa~~v~~Tv~GiGE---RaGNa~le~ 235 (378)
T PRK11858 165 CDT----VGILDPFTMYELVKELVEAVD-IPIEVHC-HNDFGMATANAIAGIEAGATQVHTTVNGLGE---RAGNAALEE 235 (378)
T ss_pred CCC----CCCCCHHHHHHHHHHHHHHCC-CCEEEEE-ECCCCHHHHHHHHHHHHCCCEEEEEEEEEEC---CCCCCCHHH
T ss_conf 365----566699999999999997269-8559997-0775559999999998099989987544654---656614999
Q ss_pred HHHHHH-HCCCCCC
Q ss_conf 999999-8298532
Q gi|254780485|r 313 DTILFN-RLGLIPD 325 (328)
Q Consensus 313 ~~~~i~-~~G~~P~ 325 (328)
..--++ ..|..+.
T Consensus 236 v~~~L~~~~~~~~~ 249 (378)
T PRK11858 236 VVMALKYLYGIDLG 249 (378)
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99999974497766
No 119
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines..
Probab=95.82 E-value=0.17 Score=29.73 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=120.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HC-CCEEEEEECCCCCCCCCCHHHHH
Q ss_conf 69998645307868342321243354777564100068579999999999----64-98389973036888744289999
Q gi|254780485|r 52 IQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK----EN-GATRYCMGAAWREPKERDLSIIV 126 (328)
Q Consensus 52 V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~----~~-G~~~~~l~~~~~~~~~~~~~~~~ 126 (328)
...++.-....+-|+..|..=|++- ....+|.|||++.++.-. .. |.-+ + +||+ | ....|...
T Consensus 81 ~~~~~~~c~~Cg~C~~~Cp~~Al~~-------~G~~~tV~ev~~~~~~D~~fY~~SGGGvT--l-SGGE-P-l~Q~eF~~ 148 (305)
T TIGR02494 81 ISIRREKCTGCGKCTEACPSGALEI-------VGKEMTVEEVMRVVLRDSIFYRNSGGGVT--L-SGGE-P-LLQPEFAL 148 (305)
T ss_pred EEECCCCCCCCCCHHHCCCCHHHHE-------ECCCCCHHHHHHHHHHHHHHHHHCCCEEE--E-CCCC-C-CCCHHHHH
T ss_conf 1000017741110110384006420-------24514889999999865566651399067--3-4871-1-40158999
Q ss_pred HHHHHHCCCCCCEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCC
Q ss_conf 9887621368832410-25699999998741576069751343-7777320588889899999999999879----8557
Q gi|254780485|r 127 DMIKGVKSLGLETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG----IKVC 200 (328)
Q Consensus 127 e~i~~i~~~~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G----~~~~ 200 (328)
+++++.++.+++.++. .|..+.+.+.++... +|-++..+.. +++.+++. ++.+.+.-|+=++.+.++| .++.
T Consensus 149 ~LL~~c~~~gihTAvET~gft~~~~~~~~~~~-~DLfL~DiK~~D~~~H~~~-tG~~N~~IL~NL~~L~~~~~~GG~~v~ 226 (305)
T TIGR02494 149 ALLKACRERGIHTAVETSGFTPWETIEKVLPY-VDLFLYDIKHLDDERHKEV-TGVDNELILENLEALLAAGKDGGKNVV 226 (305)
T ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHH-HHHHHHHHHHCCCHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99999975899467605568888999988887-7699872641180120553-389837899999999971788995589
Q ss_pred CEE--EECCCCCHHHHHHHHHHHHHCCCC-CCEEECCCEEE---C-------CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 707--866898999999999999740888-86020541120---4-------87412445687989999999999
Q gi|254780485|r 201 CGG--ILGLGEMIDDRIDMLLTLANLSTP-PESIPINLLIP---I-------PGSKFEENKKVDPIEHVRIISVA 262 (328)
Q Consensus 201 sg~--l~G~gEt~eeri~~l~~lr~l~~~-~~~v~~~~~~p---~-------~gt~l~~~~~~~~~e~lr~iAi~ 262 (328)
.=| |=|.-.+.|++-+.+..+++.+.. ...|=+-||+. . +..|+...+.++.+...++-++.
T Consensus 227 iR~PvIpG~Nds~~~i~a~~~f~~~~~~~N~~~i~LLPyH~lG~~KY~~LG~~~~~~~~~~~~~~e~~~~l~~~~ 301 (305)
T TIGR02494 227 IRIPVIPGFNDSEENIEAIAEFLRKLLPGNVKEIDLLPYHRLGENKYRQLGREYYPDSEIPDPAEEQLLELKEIF 301 (305)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 987204898989899999999999851789765674486055679998558867778888886667899999999
No 120
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.032 Score=34.54 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=46.7
Q ss_pred EEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 64530786834232124335-47775641000685799999999996498389973036888744289999988762136
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSV-HNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL 135 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~-~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~ 135 (328)
-+.+.++.|..+|.||--.. ........+...+.|+|+..++... .+...+++ +||++.....+..+++ .++..
T Consensus 24 ~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~l-TGGEP~~~~~l~~Ll~---~l~~~ 98 (212)
T COG0602 24 SVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSL-TGGEPLLQPNLLELLE---LLKRL 98 (212)
T ss_pred EEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCEEEE-ECCCCCCCCCHHHHHH---HHHHC
T ss_conf 8999768978878998987660633368988258999999998508-88766998-1886466223999999---99858
Q ss_pred CCCEEEEC-CCCCH
Q ss_conf 88324102-56999
Q gi|254780485|r 136 GLETCMTL-GMLSF 148 (328)
Q Consensus 136 ~~~i~~~~-g~~~~ 148 (328)
+..+.+.. |.+..
T Consensus 99 g~~~~lETngti~~ 112 (212)
T COG0602 99 GFRIALETNGTIPV 112 (212)
T ss_pred CCEEEEECCCCCCC
T ss_conf 84099837997155
No 121
>COG4018 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.72 E-value=0.052 Score=33.14 Aligned_cols=104 Identities=25% Similarity=0.320 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98999999999998798557707866898999999999999740888860205411204874124456879899999999
Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIIS 260 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iA 260 (328)
..++--++.+.|++.|--+.+ |+-.|+...|.++-+..--++.+.. | -.+|.||.... -...-+.+.+|
T Consensus 204 PLeEmk~VaEtArk~GkGvea--I~hvgDGyDdli~G~kA~ve~~vDv-------f-vvEGgPFNrA~-dRL~AFa~Ava 272 (505)
T COG4018 204 PLEEMKRVAETARKSGKGVEA--ILHVGDGYDDLIDGLKAAVEEVVDV-------F-VVEGGPFNRAE-DRLSAFARAVA 272 (505)
T ss_pred CHHHHHHHHHHHHHHCCCCEE--EEEECCCCHHHHHHHHHHHHHCCCE-------E-EECCCCCCHHH-HHHHHHHHHHH
T ss_conf 789999999999870888216--9882477077888999998744838-------9-98178754166-78999998787
Q ss_pred HHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC
Q ss_conf 999968687214231156516568999998099889977
Q gi|254780485|r 261 VARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328)
Q Consensus 261 i~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328)
++|++-|...+.--+..| +-...+|.+|-|++++|
T Consensus 273 a~Ril~pGkvVaTNGAYE----DEcrvGLRaGLN~iltG 307 (505)
T COG4018 273 ACRILAPGKVVATNGAYE----DECRVGLRAGLNGILTG 307 (505)
T ss_pred HHEECCCCCEEEECCCCH----HHHHHHHHHCHHHHHCC
T ss_conf 640104783784067413----66787677320156507
No 122
>PRK09389 (R)-citramalate synthase; Provisional
Probab=95.70 E-value=0.19 Score=29.41 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=8.5
Q ss_pred HHHHHCCCCCCCEEEECCCC
Q ss_conf 99998798557707866898
Q gi|254780485|r 190 ENVRKSGIKVCCGGILGLGE 209 (328)
Q Consensus 190 ~~a~~~G~~~~sg~l~G~gE 209 (328)
..|-.+|-.---|-+.|+||
T Consensus 204 laAv~aGA~~V~~TvnG~GE 223 (487)
T PRK09389 204 LAALAAGADQCHVTINGIGE 223 (487)
T ss_pred HHHHHHCCCEEEEEECCCCC
T ss_conf 99999502664334204674
No 123
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=95.62 E-value=0.13 Score=30.57 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE--------CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCE
Q ss_conf 5799999999996498389973--------03688874428999998876213688324102569999999874157606
Q gi|254780485|r 90 VDQVLKEAKNAKENGATRYCMG--------AAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY 161 (328)
Q Consensus 90 ~Eei~~~a~~~~~~G~~~~~l~--------~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~ 161 (328)
.+++++.|... --..+|+| +.++.......+.+.+.++.+++.++.+.+=+ ..+.+++...++.|+|.
T Consensus 72 ~~emi~ia~~~---kP~~vtLVPe~r~elTTegGld~~~~~~~L~~~i~~lk~~~IrvSLFI-DPd~~qi~~a~~~Gad~ 147 (234)
T cd00003 72 TEEMLEIALEV---KPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFI-DPDPEQIEAAKEVGADR 147 (234)
T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHHCCCE
T ss_conf 38999999984---998789878887864178892665478899999999986598279972-79878999999849399
Q ss_pred EEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH
Q ss_conf 97513437777320588889899999999999879855770786689899999
Q gi|254780485|r 162 YNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDR 214 (328)
Q Consensus 162 ~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eer 214 (328)
+.+.-+..-..+...-....++...++.+.|+++|+.+++ |||=+.+-.
T Consensus 148 VElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgLn~~Nl 196 (234)
T cd00003 148 VELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNA----GHGLNYENV 196 (234)
T ss_pred EEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCHHHH
T ss_conf 9982478786348103999999999999999985987854----789887679
No 124
>PRK05211 consensus
Probab=95.51 E-value=0.22 Score=28.96 Aligned_cols=215 Identities=11% Similarity=0.113 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--......+. .-.++++.+ ++.++.+.+.-|..+.++.+++.++|++.+.++--.
T Consensus 22 DP~~~ak~~~~~gadelhivDld~a~~g~~--~n~~~I~~i~~~~~~Pl~vGGGIrs~~~i~~ll~~GadkViigs~a~~ 99 (248)
T PRK05211 22 DIVPLAKRYAEEGADELVFYDITASSDGRV--VDKSWVSRVAEVIDIPFCVAGGIKSVEDAREILSFGADKISINSPALA 99 (248)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCC--CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 999999999986999899997867767872--149999999976798589627801389999999879988998976761
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-C------CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC
Q ss_conf 777732058888989999999999987985577078668-9------899999999999974088886020541120487
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-G------EMIDDRIDMLLTLANLSTPPESIPINLLIPIPG 241 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-g------Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g 241 (328)
.|.+..++......+--.-.++ + ..+...+...+++. | .|.-+..+.+..+.+++. ..+-++ -+-..|
T Consensus 100 np~li~~~~~~fG~q~IvvsiD-~-~~~~~~~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~--geIl~t-~IdrDG 174 (248)
T PRK05211 100 DPTLITRLADRFGVQCIVVGID-S-WFDAETGKYQVYQYTGDESRTKATQWETLDWVKEVQKRGA--GEIVLN-MMNQDG 174 (248)
T ss_pred CCHHHHHHHHHCCCCEEEEEEE-E-ECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC--CEEEEE-EECCCC
T ss_conf 9618999998579936999997-1-0255578579998258656530477369999999997598--669998-987899
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCC
Q ss_conf 41244568798999999999999686872142311565165689999980998899778665158889899999999829
Q gi|254780485|r 242 SKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLG 321 (328)
Q Consensus 242 t~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G 321 (328)
| +. .+ ..+.++-++- . .+..+.+++|--+ ..++....-..|+++.++|.-+ -.+.-++.+..+.+++.|
T Consensus 175 ~-~~---G~-dl~l~~~i~~--~--~~iPvIasGGv~s-~~di~~~~~~~~~~gvi~gs~~-~~~~i~l~e~k~~L~~~g 243 (248)
T PRK05211 175 V-RN---GY-DLAQLKKVRA--I--CHVPLIASGGAGT-MEHFLEAFRDADVDGALAASVF-HKQIINIGELKQYLAAQG 243 (248)
T ss_pred C-CC---CC-CHHHHHHHHH--H--CCCCEEEECCCCC-HHHHHHHHHHCCCHHHHHHHHH-HCCCCCHHHHHHHHHHCC
T ss_conf 7-27---88-9999999997--4--6999999888899-9999999986798413304888-889999999999999878
Q ss_pred CCC
Q ss_conf 853
Q gi|254780485|r 322 LIP 324 (328)
Q Consensus 322 ~~P 324 (328)
+.-
T Consensus 244 i~v 246 (248)
T PRK05211 244 IEI 246 (248)
T ss_pred CCC
T ss_conf 952
No 125
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=95.36 E-value=0.24 Score=28.63 Aligned_cols=71 Identities=25% Similarity=0.274 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 799999999996498389973036888744289999988762136883241025-6999999987415760697513
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
++..+.++.+.+.|+.-+++=+.+. .-.+.+++++.+|+..+.+.+-+| ..+.+..+.|.++|+|.+.+.+
T Consensus 222 ~~~~eRa~~Lv~aGvDvivIDtAhG-----hs~~vi~~ik~ik~~~p~~~iIaGNVaT~e~a~~Li~aGAD~vKVGi 293 (467)
T pfam00478 222 DDDLERAEALVEAGVDVIVIDSAHG-----HSEYVLEMIKWIKKKYPDLDVIAGNVVTAEAARELIDAGADAVKVGI 293 (467)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC-----CCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCEEEECC
T ss_conf 6599999999876998899734454-----41889999999874078773785100589999999970777577556
No 126
>PRK03220 consensus
Probab=95.25 E-value=0.27 Score=28.40 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--... .. .-....++++.+ ++.++.+.+--|..+.+..+.+.++|++.+.++-..
T Consensus 32 dP~~~a~~~~~~G~d~lhivDld~a-~~-g~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~~~~ll~~GadkVvigs~a~~ 109 (257)
T PRK03220 32 DPVELAAVYDAEGADELTFLDVTAS-SS-GRATMLDVVRRTAEQVFIPLTVGGGVRTVEDVDSLLRAGADKVSVNTAAIA 109 (257)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCC-CC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEECHHHHHH
T ss_conf 9999999999869998999908887-56-763079999999850696489847858799999999819750872066775
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-----------------CCCE-EEECC---CCCHHHHHHHHHHHHHCCCC
Q ss_conf 777732058888989999999999987985-----------------5770-78668---98999999999999740888
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-----------------VCCG-GILGL---GEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-----------------~~sg-~l~G~---gEt~eeri~~l~~lr~l~~~ 227 (328)
.|.+..++ +...|-+ ...| -++=+ -+|.-+..+++..+.+++.
T Consensus 110 ~p~~~~~~---------------~~~fG~q~Iv~siD~k~~~~~~~~~~~g~~v~~~g~~~~t~~~~~~~i~~~~~~g~- 173 (257)
T PRK03220 110 RPELLAEL---------------ARRFGSQCIVLSVDARRVPVGSAPTPSGFEVTTHGGRRGTGIDAVEWAARGAELGV- 173 (257)
T ss_pred CCHHHHHH---------------HHHCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHCCC-
T ss_conf 94777899---------------98709866999999886256774346874999728826028759999999862698-
Q ss_pred CCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC
Q ss_conf 86020541120487412445687989999999999996868721423115651656899999809988997786651588
Q gi|254780485|r 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN 307 (328)
Q Consensus 228 ~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g 307 (328)
..+-+ .-+-..|| +.+ + ..+.++.++ -.. +..+.+++|--+ ..++.. ++..|++++++|.-+ ..+.
T Consensus 174 -geil~-tdI~rDGt-~~G---~-d~~l~~~i~---~~~-~~piIasGGv~s-~~di~~-l~~~g~~gv~~g~a~-~~~~ 239 (257)
T PRK03220 174 -GEILL-NSMDADGT-KAG---F-DLEMLRAVR---AAV-TVPVIASGGAGA-VEHFAP-AVAAGADAVLAASVF-HFGE 239 (257)
T ss_pred -CEEEE-EEECCCCC-CCC---C-CHHHHHHHH---HHC-CCCEEEECCCCC-HHHHHH-HHHCCCCEEEEHHHH-HCCC
T ss_conf -88999-98868660-237---8-969999999---748-999899878999-999999-997899799874687-8899
Q ss_pred CCHHHHHHHHHHCCCC
Q ss_conf 8989999999982985
Q gi|254780485|r 308 PSYNKDTILFNRLGLI 323 (328)
Q Consensus 308 ~~~~~~~~~i~~~G~~ 323 (328)
-++.+..+.++..|+.
T Consensus 240 ~s~~~~k~~l~~~~i~ 255 (257)
T PRK03220 240 LTIGQVKAALAAAGIT 255 (257)
T ss_pred CCHHHHHHHHHHCCCC
T ss_conf 8899999999987597
No 127
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=95.15 E-value=0.079 Score=31.94 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-------CC-CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCE
Q ss_conf 5799999999996498389973-------03-688874428999998876213688324102569999999874157606
Q gi|254780485|r 90 VDQVLKEAKNAKENGATRYCMG-------AA-WREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY 161 (328)
Q Consensus 90 ~Eei~~~a~~~~~~G~~~~~l~-------~~-~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~ 161 (328)
.+++++.|...+ -..+|+| ++ ++.......+.+.+.++.+++.++.+.+=+ ..+.+++...++.|+|.
T Consensus 75 t~e~i~ia~~~k---P~qvtLVPe~r~e~TTegGld~~~~~~~L~~~i~~lk~~gIrvSLFi-DPd~~~i~~a~~~Gad~ 150 (240)
T PRK05265 75 TEEMLDIALEIK---PHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFI-DPDPEQIEAAAEVGADR 150 (240)
T ss_pred CHHHHHHHHHCC---CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHHCCCE
T ss_conf 188999999849---98599888998862678893776578999999999986598179972-79878999999849399
Q ss_pred EEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 9751343777732058888989999999999987985577078668989999999999997408888602054
Q gi|254780485|r 162 YNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPIN 234 (328)
Q Consensus 162 ~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~ 234 (328)
+.+.-+..-..+.........+...++.+.|+++|+.+++ |||=+.+-.-. +..+..++ .|.++
T Consensus 151 VElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgLn~~Nl~~-i~~ip~i~----EvsIG 214 (240)
T PRK05265 151 IELHTGPYADAKTEAEQAAELERIAEAAALAASLGLGVNA----GHGLNYHNVKP-IAAIPGIE----ELNIG 214 (240)
T ss_pred EEEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCHHHHHH-HHCCCCCE----EEECC
T ss_conf 9983478786357521999999999999999986987853----78988777899-84489974----88457
No 128
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.15 E-value=0.28 Score=28.20 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--...... -....++++.+ ++.++.+.+.-|..+.++.+++.++|++.+.++=-.
T Consensus 32 dP~~~a~~~~~~Gad~lhlvDld~a~~~--~~~n~~~I~~i~~~~~vpiqvGGGIrs~e~~~~ll~~GadkViigS~a~~ 109 (252)
T PRK13597 32 DPVEAARAYDEAGADELVFLDISATHEE--RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 9999999999869999999956466668--66379999999862698289847713089999998569877983266674
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CC----------CEEEECC---CCCHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 777732058888989999999999987985-57----------7078668---989999999999997408888602054
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VC----------CGGILGL---GEMIDDRIDMLLTLANLSTPPESIPIN 234 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~----------sg~l~G~---gEt~eeri~~l~~lr~l~~~~~~v~~~ 234 (328)
.|.+..++ +...|-+ +. .+.++-. .++.-+.++++..+.+++. ..+-+
T Consensus 110 np~~i~~~---------------~~~fG~q~Iv~~iD~~~~~~~~~v~~~~~~~~~~~~~~d~~~~~~~~G~--geil~- 171 (252)
T PRK13597 110 RPELIREL---------------ADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGA--GEILL- 171 (252)
T ss_pred CCHHHHHH---------------HHHCCCCCEEEEEEEEECCCCCEEEECCCEEECCCCHHHHHHHHHHHCC--CEEEE-
T ss_conf 93789999---------------9874996529999888618974167538727569769999999996489--99999-
Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHH
Q ss_conf 11204874124456879899999999999968687214231156516568999998099889977866515888989999
Q gi|254780485|r 235 LLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDT 314 (328)
Q Consensus 235 ~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~ 314 (328)
.-+-..|| +. .++ .+.++-++ +. . +..+.+++|-- -..++.+ ++..|+++.++|. ....+.-++++..
T Consensus 172 tdI~rDGt-~~---G~d-~~l~~~i~--~~-~-~~pvIasGGv~-s~~dl~~-l~~~g~~gvi~G~-al~~~~~s~~e~k 239 (252)
T PRK13597 172 TSMDRDGT-KE---GYD-LRLTRMVA--EA-V-GVPVIASGGAG-RMEHFLE-AFQAGAEAALAAS-VFHFGEIPIPELK 239 (252)
T ss_pred EEECCCCC-CC---CCC-HHHHHHHH--HC-C-CCCEEEECCCC-CHHHHHH-HHHCCCCEEEEHH-HHHCCCCCHHHHH
T ss_conf 75737684-44---769-59999998--50-7-99899978989-9999999-9878996998712-7677999999999
Q ss_pred HHHHHCCCCCC
Q ss_conf 99998298532
Q gi|254780485|r 315 ILFNRLGLIPD 325 (328)
Q Consensus 315 ~~i~~~G~~P~ 325 (328)
+.+++.|+.-.
T Consensus 240 ~~L~~~~i~vr 250 (252)
T PRK13597 240 RYLAEKGVHVR 250 (252)
T ss_pred HHHHHCCCCCC
T ss_conf 99998789554
No 129
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=95.04 E-value=0.3 Score=28.00 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE--------CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 85799999999996498389973--------0368887442899999887621368832410256999999987415760
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMG--------AAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~--------~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
..+++++.|...+ -..+|+| +.++.......+.+.+.++.+++.+..+.+-+ ..+.+++...++.|+|
T Consensus 72 ~~~emi~ia~~~k---P~qvtLVPE~r~elTTegGld~~~~~~~L~~~i~~lk~~girvSlFI-Dpd~~~i~~a~~~Gad 147 (239)
T pfam03740 72 PTEEMLELALKTK---PHQVTLVPEKREEITTEGGLDVVAQLEKLKPAIRRLKNAGIRVSLFI-DPDPEQIEAAKIVGAD 147 (239)
T ss_pred CHHHHHHHHHHCC---CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHCCCC
T ss_conf 7499999999849---98589888999873568880633406899999999860785389970-7998999999980929
Q ss_pred EEEEECCCCHHHHHCCCCCC--CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH
Q ss_conf 69751343777732058888--9899999999999879855770786689899999
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTH--TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDR 214 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~--~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eer 214 (328)
.+.+.-...-..+....... .++...++.+.|+++|+.+++ |||=+.+-.
T Consensus 148 ~VElhTG~YA~a~~~~~~~~~~~l~~i~~aa~~A~~lGL~VnA----GHgLn~~Nl 199 (239)
T pfam03740 148 RIELHTGPYADAHNDAEQAREELLERLAAGAALAFDLGLVVNA----GHGLTYHNV 199 (239)
T ss_pred EEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCHHHH
T ss_conf 9985047788775131555799999999999999874985746----789887669
No 130
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=94.85 E-value=0.17 Score=29.64 Aligned_cols=44 Identities=27% Similarity=0.175 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85799999999996498389973036888744289999988762
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328)
+.+.-+.+++.+.+.|+.++-++.-.......+++++.+-++.+
T Consensus 72 ~~~~K~~E~~~ai~~GAdEiD~Vin~~~~~~g~~~~v~~ei~~v 115 (221)
T PRK00507 72 TTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAV 115 (221)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCHHHHHHHHHHH
T ss_conf 57689999999998599877740259999758488999999999
No 131
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=94.60 E-value=0.39 Score=27.26 Aligned_cols=214 Identities=15% Similarity=0.195 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCCCCEEE
Q ss_conf 006857999999999964983899730368887-4428999998876213-68832410256999999987415760697
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPK-ERDLSIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328)
.++..+...+.+++..+.|..-+++-.|...-- ..+ -++.++.+++ ....+.+ +|-++.+.......+|+|-+.
T Consensus 113 DlI~v~d~~~ra~el~~lGvd~I~vH~G~D~Q~~g~~---p~~~l~~v~~~~~~~vAV-AGGi~~~t~~~~v~~GAdIvI 188 (429)
T PRK07028 113 DLINVPDPVKRAVELEELGVDIINVHVGIDQQMLGKD---PLELLKKVSEEVSIPIAA-AGGLDAETAVKAVEAGADIVI 188 (429)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEEEEECHHHCCCC---HHHHHHHHHHHCCCEEEE-ECCCCHHHHHHHHHCCCCEEE
T ss_conf 8558998899999999709988999762335531798---499999999755971899-668787769999975998999
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-HHHH------CCCCCCEEECCCE
Q ss_conf 51343777732058888989999999999987985577078668989999999999-9974------0888860205411
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLL-TLAN------LSTPPESIPINLL 236 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~-~lr~------l~~~~~~v~~~~~ 236 (328)
..=- +-...+..+--.-++.|-+.+...+.. .-.+.+|-+..++ .+.. ++....+..+-++
T Consensus 189 VGga--------I~~a~dp~~aAr~ir~ai~~~~~~~~~----~~~~~~~~~~~~~~~vs~~n~sdamhr~~~~~~~~p~ 256 (429)
T PRK07028 189 VGGN--------IYKSADVTGAARDIREALDSPPVPTDK----FKKSLDEEIRELFKEVSTSNISDAMHRKGAMKGLKPL 256 (429)
T ss_pred ECCC--------CCCCCCHHHHHHHHHHHHHCCCCCCCC----CCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEC
T ss_conf 8940--------057999799999999997376767652----0022389999999851887611566640455785442
Q ss_pred EECCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCEEEE-HHH-H-HCHHHHHHHHHHCCCEEEECCEEECCCCCCH
Q ss_conf 204874124456---879899999999999968687214231-156-5-1656899999809988997786651588898
Q gi|254780485|r 237 IPIPGSKFEENK---KVDPIEHVRIISVARILMPKSRLRLAA-GRA-M-MSDELQALCFFSGANSIFVGDTLLTAKNPSY 310 (328)
Q Consensus 237 ~p~~gt~l~~~~---~~~~~e~lr~iAi~RL~lP~~~i~i~~-~~~-~-~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~ 310 (328)
++|+.+-+.. ...+-+.++.+-..=+.-|...|-|.. |+. . .|.=+...+...|+.++++.+.
T Consensus 257 --~~~~k~~G~avTV~t~~gD~~~~~~AiD~A~PGDViVId~~G~d~A~WGeLmt~aA~~rGIaG~VIDGa--------- 325 (429)
T PRK07028 257 --VRGLKMVGPAVTVQTFAGDWAKPVEAIDVAEPGDVLVIDNCSSDIAPWGGLATLSCLNKGIAGVVIDGA--------- 325 (429)
T ss_pred --CCCCEEEEEEEEEEECCCCCCCHHHHHHCCCCCCEEEEECCCCCCEEEHHHHHHHHHHCCCEEEEEECC---------
T ss_conf --468634666799995688740567786247999789996799975130899999999879819997015---------
Q ss_pred HHHHHHHHHCCCCCCCC
Q ss_conf 99999999829853247
Q gi|254780485|r 311 NKDTILFNRLGLIPDLS 327 (328)
Q Consensus 311 ~~~~~~i~~~G~~P~~~ 327 (328)
-+|.+-|+++|| |+|+
T Consensus 326 vRDv~eIr~lgf-PVFa 341 (429)
T PRK07028 326 VRDVDEIRKLGF-PVFA 341 (429)
T ss_pred CCCHHHHHHCCC-CEEE
T ss_conf 669999984599-8698
No 132
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=94.40 E-value=0.34 Score=27.65 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=68.6
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCC------CCCCCHHHHHHHHHHHCCC--CC-----------CEEEEC----
Q ss_conf 068579999999999649838997303688------8744289999988762136--88-----------324102----
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWRE------PKERDLSIIVDMIKGVKSL--GL-----------ETCMTL---- 143 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~------~~~~~~~~~~e~i~~i~~~--~~-----------~i~~~~---- 143 (328)
-.|.|++.+.++...+.|+++++--=|..+ +...++.|-.|+|+-||+. .. .-++.+
T Consensus 84 ~~t~~e~~~~L~~y~~~Gi~~ilALRGD~p~~~~~~~~~~~~~yA~eLV~~Ir~~~g~~GIy~~~E~V~~~F~I~VAaYP 163 (302)
T TIGR00676 84 GSTREEIEEILREYRELGIRNILALRGDPPDETDFEPAPGGFKYASELVEFIRSEHGFGGIYLDGEDVTEDFEIGVAAYP 163 (302)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC
T ss_conf 68989999999999874886798743768888865658876677689999998368998556477645765505564258
Q ss_pred ----CCCCH----HHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCC--CCCCEEE
Q ss_conf ----56999----9999874157606975134377773205888898999999999998798--5577078
Q gi|254780485|r 144 ----GMLSF----EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGI--KVCCGGI 204 (328)
Q Consensus 144 ----g~~~~----~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~--~~~sg~l 204 (328)
-..+. ..+++=-+||+|...- .=+| +.++..+-.+...++|+ ++-.|+|
T Consensus 164 E~Hpea~~~~~D~~nLK~KVdAGAd~aIT-----QlFF-------dnd~y~rF~d~c~~aGI~~PI~PGIM 222 (302)
T TIGR00676 164 EKHPEAPNLEEDIENLKRKVDAGADYAIT-----QLFF-------DNDDYYRFVDRCRAAGIDVPIIPGIM 222 (302)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEE-----EEEC-------CHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 87888888899999999988627780331-----1111-------56678889999998789500016723
No 133
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=94.28 E-value=0.46 Score=26.81 Aligned_cols=220 Identities=17% Similarity=0.174 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC---CCCCHHHHHHHHCCCCCEE
Q ss_conf 0068579999999999649838997303688874428999998876213688324102---5699999998741576069
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL---GMLSFEQAQILSKAGLDYY 162 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~---g~~~~~~~~~Lk~aG~~~~ 162 (328)
..++.|+-++.++.+.+.|...+-.+ ....+..+++..-.+.. ..+..++... -...+..+..+.++|++.+
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g--~p~~s~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i 93 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAG--FPVASPGDFEFVRAIAE---KAGLFICALIAALARAIKRDIEALLEAGVDRI 93 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 95788999999999997699879972--78688546999999987---46863220223317867755999975799989
Q ss_pred EEECCCCHHHHHCCCCCCCHHH----HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEE
Q ss_conf 7513437777320588889899----999999999879855770786689899999999999974088886020541120
Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFED----RLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIP 238 (328)
Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~----~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p 238 (328)
++...|++-....... .+.++ -.++.+.|++.|+++.....-...-.++..++....+.+.+.. .+-
T Consensus 94 ~if~~tSd~h~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~~~~~~Ed~~rt~~e~l~~~~~~~~~~ga~--------~i~ 164 (409)
T COG0119 94 HIFIATSDLHLRYKLK-KTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGAD--------RIN 164 (409)
T ss_pred EEEECCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCC--------EEE
T ss_conf 9997478899998848-9999999999999999997397589875313367999999999999971994--------999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEHHHHHCH--HHHHHHHHHCCC---EEEECCEEECCCCCCHHH
Q ss_conf 487412445687989999999999996868-72142311565165--689999980998---899778665158889899
Q gi|254780485|r 239 IPGSKFEENKKVDPIEHVRIISVARILMPK-SRLRLAAGRAMMSD--ELQALCFFSGAN---SIFVGDTLLTAKNPSYNK 312 (328)
Q Consensus 239 ~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~-~~i~i~~~~~~~~~--~~~~~~L~~GaN---~~~~g~~~~t~~g~~~~~ 312 (328)
.++| ....+|.++..++.-.+=-+|+ +.+.+-+ -...|- -....++.+||+ +++-|-- -.+++.+.++
T Consensus 165 l~DT----vG~~~P~~~~~~i~~l~~~v~~~~~i~~H~-HND~G~AvANslaAv~aGa~~v~~TvnGiG-ERaGna~l~~ 238 (409)
T COG0119 165 LPDT----VGVATPNEVADIIEALKANVPNKVILSVHC-HNDLGMAVANSLAAVEAGADQVEGTVNGIG-ERAGNAALEE 238 (409)
T ss_pred ECCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEECCCCE-ECCCCCCHHH
T ss_conf 7787----686587999999999998378887388983-698565999999999848838999645614-3366654799
Q ss_pred HHH---HHHHCCCCCC
Q ss_conf 999---9998298532
Q gi|254780485|r 313 DTI---LFNRLGLIPD 325 (328)
Q Consensus 313 ~~~---~i~~~G~~P~ 325 (328)
... +....|..|.
T Consensus 239 v~~~l~~~~~~~~~~~ 254 (409)
T COG0119 239 VVLALALRKDYGVDTG 254 (409)
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999765187568
No 134
>KOG3111 consensus
Probab=94.26 E-value=0.46 Score=26.77 Aligned_cols=195 Identities=15% Similarity=0.179 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCH-HHHHHHHHHHCCCC--CCEEEECCCCCHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999999649838997-303688874428-99999887621368--8324102569999999874157606975134
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCM-GAAWREPKERDL-SIIVDMIKGVKSLG--LETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~-~~~~e~i~~i~~~~--~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328)
..-+++....+.|+.-+++ +..++--+.-.+ .-+++.+|...... ..+|+-+ .-.++....+.++|++.+..-.|
T Consensus 18 nL~~E~~~~~~~GadwlHlDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV-~~Peq~v~~~a~agas~~tfH~E 96 (224)
T KOG3111 18 NLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMV-ENPEQWVDQMAKAGASLFTFHYE 96 (224)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEE-CCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 89999999997498758786014710477433618899998525888523678764-69888767998647756999864
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC
Q ss_conf 37777320588889899999999999879855770786689899999999999974088886020541120487412445
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN 247 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~ 247 (328)
.. ++|.++.+.+++.|++++. -+-.|-..++...++. +-+++-+.-.-|--| +.
T Consensus 97 ~~-------------q~~~~lv~~ir~~gmk~G~--alkPgT~Ve~~~~~~~-------~~D~vLvMtVePGFG----GQ 150 (224)
T KOG3111 97 AT-------------QKPAELVEKIREKGMKVGL--ALKPGTPVEDLEPLAE-------HVDMVLVMTVEPGFG----GQ 150 (224)
T ss_pred EC-------------CCHHHHHHHHHHCCCEEEE--EECCCCCHHHHHHHHH-------HCCEEEEEEECCCCC----HH
T ss_conf 32-------------5789999999974975668--7489995899997641-------025799998548975----04
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHC
Q ss_conf 6879899999999999968687214231156516568999998099889977866515888989999999982
Q gi|254780485|r 248 KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRL 320 (328)
Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~ 320 (328)
. --++.+.-+--.|-=.|+..|-+-+| ++++....+-.+|||-|..|.-+..++ .+.+.+..||..
T Consensus 151 k--Fme~mm~KV~~lR~kyp~l~ieVDGG---v~p~ti~~~a~AGAN~iVaGsavf~a~--d~~~vi~~lr~~ 216 (224)
T KOG3111 151 K--FMEDMMPKVEWLREKYPNLDIEVDGG---VGPSTIDKAAEAGANMIVAGSAVFGAA--DPSDVISLLRNS 216 (224)
T ss_pred H--HHHHHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHCCCCEEEECCEEECCC--CHHHHHHHHHHH
T ss_conf 5--78999899999998689843885488---682137799875888798633345279--989999999999
No 135
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=94.14 E-value=0.35 Score=27.63 Aligned_cols=108 Identities=22% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEE
Q ss_conf 0685799999999996498389973036888744289999988762136883241025-699999998741576069751
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHN 165 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~ 165 (328)
.-+-|.-.+.|.++.+.|+-=++|=+++.+ =.+.++.||.+|+..+++-+=.| ..|.++.+-|-+||+|.+-+.
T Consensus 234 vg~r~~D~~R~~~L~~AGvDv~viDsshGh-----s~~vl~~ik~~k~~Yp~~~iiaGNVaT~~~a~~LI~AgADg~rVG 308 (476)
T TIGR01302 234 VGTREDDLERAEALVEAGVDVIVIDSSHGH-----SIYVLDSIKKIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 308 (476)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEEEECCCCC-----CHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 468986189999999659658998166545-----378999999998638805799434411788988985288878983
Q ss_pred CCC-C----HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 343-7----77732058888989999999999987985577
Q gi|254780485|r 166 IDT-S----ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCC 201 (328)
Q Consensus 166 let-~----~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~s 201 (328)
+.. | +....--.|-.|. --++.+.|++.|+++-|
T Consensus 309 iGpGSICTTr~V~gVGvPQ~TA--v~~Va~~A~~~Gi~VIA 347 (476)
T TIGR01302 309 IGPGSICTTRIVAGVGVPQITA--VYDVAEYAAQSGIPVIA 347 (476)
T ss_pred CCCCCCCEEEEEEECCCHHHHH--HHHHHHHHHHCCCEEEE
T ss_conf 6889811001565127626889--99999999727990998
No 136
>PRK04281 consensus
Probab=94.00 E-value=0.52 Score=26.44 Aligned_cols=201 Identities=12% Similarity=0.111 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 999999999964983899730368887442899999887621-36883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--...... -....+.++.+. +.++.+.+.-|..+.++.+++.++|++.+.++--.
T Consensus 31 dP~~~ak~~~~~GadelhivDld~a~~~--~~~~~~~I~~i~~~~~vpi~vGGGIrs~e~~~~ll~~GadkViigs~a~~ 108 (254)
T PRK04281 31 DPVEAAKRYNGEGADELTFLDITASSDN--RDTILHIIEEVAGQVFIPLTVGGGVRTVADIRRLLNAGADKVSINTAAVT 108 (254)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCCEEEECCEEECHHHHHHHHCCCCEEEECHHHHH
T ss_conf 9999999999869999999968898777--53089999999850796289977754518899999769988997776764
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-C-------------CCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 777732058888989999999999987985-5-------------770786689---89999999999997408888602
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-V-------------CCGGILGLG---EMIDDRIDMLLTLANLSTPPESI 231 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~-------------~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v 231 (328)
.|.+..++ +.+.|-+ + .-+-++-+| .|.-+..+.+..+.+++. ..+
T Consensus 109 np~~l~~~---------------~~~fG~q~Iv~siD~k~~~~~~~~~~i~~~g~~~~t~~~~~~~~~~~~~~g~--gei 171 (254)
T PRK04281 109 RPDLIDEA---------------AGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEWAVEMQKRGA--GEI 171 (254)
T ss_pred CCHHHHHH---------------HHHCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCC--CEE
T ss_conf 92676767---------------8755982179999888502468845999758864775449999999875299--899
Q ss_pred ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHC-CCEEEECCEEECCCCCCH
Q ss_conf 0541120487412445687989999999999996868721423115651656899999809-988997786651588898
Q gi|254780485|r 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSG-ANSIFVGDTLLTAKNPSY 310 (328)
Q Consensus 232 ~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~G-aN~~~~g~~~~t~~g~~~ 310 (328)
-+ --+-..|| +. ....+.++-++ +. .+..+.+++|--+ ..++.+ ++..| ++++.+|. +..-+.-++
T Consensus 172 l~-tdI~rDGt-~~----G~d~~l~~~i~--~~--~~iPvIasGGv~~-~~di~~-~~~~~~~~~v~~g~-~~~~~~~sl 238 (254)
T PRK04281 172 LL-TGMDRDGT-KQ----GFNLPLTRAVA--EA--VDIPVIASGGVGN-VRHLIE-GITEGKADAVLAAG-IFHFGEIAI 238 (254)
T ss_pred EE-EEECCCCC-CC----CCCHHHHHHHH--HH--CCCCEEEECCCCC-HHHHHH-HHHHCCCCEEEEHH-HHHCCCCCH
T ss_conf 99-88857887-68----76869999998--61--6998999789899-999999-99808988897643-777799899
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999999829853
Q gi|254780485|r 311 NKDTILFNRLGLIP 324 (328)
Q Consensus 311 ~~~~~~i~~~G~~P 324 (328)
.+..+.+++.|+.-
T Consensus 239 ~eak~~l~~~~i~v 252 (254)
T PRK04281 239 REAKRAMREAGIEV 252 (254)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999867970
No 137
>PRK02747 consensus
Probab=93.82 E-value=0.56 Score=26.23 Aligned_cols=203 Identities=13% Similarity=0.127 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 999999999964983899730368887442899999887621-36883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--...... -....+.++.+. +.++.+.+.-|..+.++.+++.++|++.+.++--.
T Consensus 31 dP~~~ak~~~~~Gadelh~vDl~~a~~~--~~~~~~lI~~i~~~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~ 108 (257)
T PRK02747 31 DPVEAARAYDAAGADELCFLDITASHEN--RGTMLDVVARTAEQCFMPLTVGGGVRTVDDIRKLLLAGADKVSINSAAVA 108 (257)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 9999999999869998999947677567--55289999999986699889848820738878998769968983444654
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCE---------------EEECC---CCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 777732058888989999999999987985-5770---------------78668---9899999999999974088886
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCG---------------GILGL---GEMIDDRIDMLLTLANLSTPPE 229 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg---------------~l~G~---gEt~eeri~~l~~lr~l~~~~~ 229 (328)
.|.+..++ +.+.|=+ +... -++=+ -.|.-+..+++..+.+++. .
T Consensus 109 np~l~~~~---------------~~~fG~q~Iv~siD~k~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~~~~~~G~--g 171 (257)
T PRK02747 109 RPEFVAEA---------------ADKFGSQCIVVAIDAKRVSPAGENDRWEIFTHGGRKPTGIDAVEFAQKVVSLGA--G 171 (257)
T ss_pred CCHHHHHH---------------HHHCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHCCC--C
T ss_conf 83477778---------------875596579999987751576778738999889846343039999999997099--8
Q ss_pred EEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC
Q ss_conf 02054112048741244568798999999999999686872142311565165689999980998899778665158889
Q gi|254780485|r 230 SIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS 309 (328)
Q Consensus 230 ~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~ 309 (328)
.+-+ .-+-..|| +. .++ .+.++-++- ..+ ..+.+++|- .-..++.++.-..+++++++|.- ..-+.-+
T Consensus 172 eil~-tdI~rDG~-~~---G~d-l~l~~~i~~---~~~-~pvIasGGv-~~~~di~~~~~~~~~~av~~g~~-~~~~~~~ 239 (257)
T PRK02747 172 EILL-TSMDRDGT-KA---GFD-LPLTRAIAD---AVR-VPVIASGGV-GTLDHLVEGVRDGHATAVLAASI-FHFGTYT 239 (257)
T ss_pred EEEE-EEECCCCC-CC---CCC-HHHHHHHHH---CCC-CCEEEECCC-CCHHHHHHHHHHCCCCEEEEHHH-HHCCCCC
T ss_conf 8999-98835573-26---788-699999986---079-989997799-99999999998389849988326-7769989
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 8999999998298532
Q gi|254780485|r 310 YNKDTILFNRLGLIPD 325 (328)
Q Consensus 310 ~~~~~~~i~~~G~~P~ 325 (328)
+.+..+.+++.|+.-.
T Consensus 240 l~~ak~~L~~~~i~vR 255 (257)
T PRK02747 240 IGEAKAHMAAAGIPMR 255 (257)
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999998789654
No 138
>TIGR02660 nifV_homocitr homocitrate synthase; InterPro: IPR013477 Most NifV-type homocitrate synthases are encoded within operons for nitrogen fixation. They are homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by these enzymes becomes a part of the iron-molybdenum cofactor of nitrogenase.; GO: 0004410 homocitrate synthase activity, 0051188 cofactor biosynthetic process.
Probab=93.76 E-value=0.57 Score=26.16 Aligned_cols=208 Identities=16% Similarity=0.240 Sum_probs=122.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEE
Q ss_conf 10006857999999999964983899730368887442899999887621368832410256-99999998741576069
Q gi|254780485|r 84 ASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYY 162 (328)
Q Consensus 84 ~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~ 162 (328)
.-.-++.+|=+++|+.+.+.|+.++-.+ ..-.-..+ .+.|+.|...++...+-... +...++..-.+.|++.+
T Consensus 16 pGVAF~~~EK~aIA~aLd~aGV~ElEvG--iPAMG~~E----~~~iraI~~~~l~a~l~~WcR~~~~Di~aa~~~G~~~V 89 (369)
T TIGR02660 16 PGVAFTAAEKLAIARALDEAGVDELEVG--IPAMGEEE----RAVIRAIVALGLKARLMAWCRARDADIEAAARCGVDAV 89 (369)
T ss_pred CHHCCCHHHHHHHHHHHHHHCCCEEEEC--CCCCCHHH----HHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHEE
T ss_conf 2003487899999999998096247615--77687889----99999999628993031100104799999987205203
Q ss_pred EEECCCCHH-HHHCCCCC-CCH-HHHH-HHHHHHHHCCCCCCCEEEECCCC-CHHH---HHHHHHHHHHCCCCCCEEECC
Q ss_conf 751343777-73205888-898-9999-99999998798557707866898-9999---999999997408888602054
Q gi|254780485|r 163 NHNIDTSER-FYPHVTTT-HTF-EDRL-QTLENVRKSGIKVCCGGILGLGE-MIDD---RIDMLLTLANLSTPPESIPIN 234 (328)
Q Consensus 163 ~~~let~~~-~~~~~~~~-~~~-~~~l-~~~~~a~~~G~~~~sg~l~G~gE-t~ee---ri~~l~~lr~l~~~~~~v~~~ 234 (328)
++.+-+|.. +..|...+ ..| .+.+ +++..|++.|+.|| +|-.+ |+.| .++.+...++.+. .
T Consensus 90 ~iS~PvSd~~~~~KL~~~Cr~w~~~~~~~~V~~A~~~Gl~Vs----VG~EDASRAd~~FL~~~~~~A~~aGA-------~ 158 (369)
T TIGR02660 90 DISIPVSDLQIEAKLRKDCRAWVLERLARLVSFARDRGLEVS----VGGEDASRADPEFLVELAEVAQEAGA-------D 158 (369)
T ss_pred ECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE----ECCCCCCCCCHHHHHHHHHHHHHCCC-------C
T ss_conf 100277799999974885789999999999999876442031----05625545888899999999987063-------1
Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHH-CHHHHH------HHHHHCCC---EEE--ECCEE
Q ss_conf 1120487412445687989999999999996868721423115651-656899------99980998---899--77866
Q gi|254780485|r 235 LLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMM-SDELQA------LCFFSGAN---SIF--VGDTL 302 (328)
Q Consensus 235 ~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~-~~~~~~------~~L~~GaN---~~~--~g~~~ 302 (328)
+|++ -+| ..-++|.-....++..|=-+|= .+|-. ..|++. -++++||. .|. .||
T Consensus 159 RfRf-ADT----vG~LDPF~~~~~~~~Lr~~~~l-------~lE~HaHnDlGmATANtLAAv~AGA~~vntTV~GLGE-- 224 (369)
T TIGR02660 159 RFRF-ADT----VGILDPFSTYELVRALRQAVDL-------PLEFHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE-- 224 (369)
T ss_pred CCCH-HHH----CCCCCHHHHHHHHHHHHHCCCC-------CEEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCHHH--
T ss_conf 1014-312----0225727899999998721799-------6258504763479999999886085776335433011--
Q ss_pred ECCCCCCHHHHHHHHHH-CCCC
Q ss_conf 51588898999999998-2985
Q gi|254780485|r 303 LTAKNPSYNKDTILFNR-LGLI 323 (328)
Q Consensus 303 ~t~~g~~~~~~~~~i~~-~G~~ 323 (328)
-++|...||..--++. .|+.
T Consensus 225 -RAGNAaLEEV~~AL~~~~G~d 245 (369)
T TIGR02660 225 -RAGNAALEEVAMALKRLLGRD 245 (369)
T ss_pred -HHCCCHHHHHHHHHHHHCCCC
T ss_conf -001222489999999857988
No 139
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.65 E-value=0.6 Score=26.03 Aligned_cols=178 Identities=19% Similarity=0.224 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEECC-CCCHHHHHHHHCCCCCEEEE
Q ss_conf 068579999999999649838997303688874428999998876213688-3241025-69999999874157606975
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL-ETCMTLG-MLSFEQAQILSKAGLDYYNH 164 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~-~i~~~~g-~~~~~~~~~Lk~aG~~~~~~ 164 (328)
..+.|+.+..++.+.+.|++-+-+.. +.|. ..+.|+.+++..+ .+.+-+| .++.++.++..++|++.+.
T Consensus 18 ~~~~~~a~~~~~al~~~Gi~~iEVTl--~tp~------a~~~I~~l~~~~~~~~~iGAGTVlt~e~~~~ai~aGA~FiV- 88 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPL--NSPD------PFDSIAALVKALGDDALIGAGTVLSPEQVDRLADAGGRLIV- 88 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--CCCC------HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEE-
T ss_conf 89999999999999986998899917--9976------99999999996798659986204679999999985999999-
Q ss_pred ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCC
Q ss_conf 13437777320588889899999999999879855770786689899999999999974088886020541120487412
Q gi|254780485|r 165 NIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKF 244 (328)
Q Consensus 165 ~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l 244 (328)
+| ..+ -++++.+++.|++.-.|.+ |+-|...-+ +.+. ..+- ++|-
T Consensus 89 ----SP--------~~~----~~vi~~a~~~~i~~iPG~~-----TPsEi~~A~----~~Ga--~~vK---lFPA----- 133 (206)
T PRK09140 89 ----TP--------NID----PEVIRRAVAYGMTVMPGVA-----TPTEAFAAL----RAGA--DALK---LFPA----- 133 (206)
T ss_pred ----CC--------CCC----HHHHHHHHHCCCCCCCCCC-----CHHHHHHHH----HCCC--CEEE---ECCH-----
T ss_conf ----99--------998----9999999982996527859-----999999999----8598--7156---5751-----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 44568798999999999999686-8721423115651656899999809988997786651588898999999998
Q gi|254780485|r 245 EENKKVDPIEHVRIISVARILMP-KSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 245 ~~~~~~~~~e~lr~iAi~RL~lP-~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
....+ .++|.+ |=.+| +..+ +.+|= +..+.....|.+||...-+|.++ +.+|.+.++..+.-++
T Consensus 134 ---~~~Gp-~~ikal---~~p~P~~~~~-~ptGG--V~~~N~~~~l~aGa~avG~Gs~L-~~~~~~~~~i~~~a~~ 198 (206)
T PRK09140 134 ---SQLGP-AGIKAL---RAVLPPDVPV-FAVGG--VTPENLAPYLAAGAAGFGLGSAL-YRPGQSAEEVAERARA 198 (206)
T ss_pred ---HCCCH-HHHHHH---HCCCCCCCEE-EECCC--CCHHHHHHHHHCCCCEEEECHHC-CCCCCCHHHHHHHHHH
T ss_conf ---10599-999998---6438999989-95379--88888999998699199960651-5999999999999999
No 140
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.63 E-value=0.6 Score=26.01 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHCC-CCCCEEEECCCCCHHH----HHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 28999998876213-6883241025699999----998741576069751343777732058888989999999999987
Q gi|254780485|r 121 DLSIIVDMIKGVKS-LGLETCMTLGMLSFEQ----AQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS 195 (328)
Q Consensus 121 ~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~----~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~ 195 (328)
.++.+++.++..++ .+..+.+|+.-.+.++ .+++.++|+|.+.+|+-. +...+........++-.++++..++.
T Consensus 83 g~e~~l~~i~~~~~~~~~pvI~Si~g~s~ee~~~~a~~~~~~gad~lElNls~-~~~~~~~~~~~~~~~~~~iv~~Vk~~ 161 (325)
T cd04739 83 GPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYA-LPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 89999999999875359875987168998999999999976499879996566-78885544210688999999999860
Q ss_pred -CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-CCCE----------EECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -9855770786689899999999999974088886020-5411----------204874124456879899999999999
Q gi|254780485|r 196 -GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-INLL----------IPIPGSKFEENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 196 -G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~~~~----------~p~~gt~l~~~~~~~~~e~lr~iAi~R 263 (328)
.+++ ++=+.-...+..+....+.+-+. +++. +|.+ .|.++..+.. +... --.||+++..|
T Consensus 162 ~~~Pv----~vKLsP~~~di~~ia~aa~~~GA--dgi~liNT~~~~~id~~~~~~~~~~~lSg-~~~~-~~alr~v~~~~ 233 (325)
T cd04739 162 VTIPV----AVKLSPFFSALAHMAKQLDAAGA--DGLVLFNRFYQPDIDLETLEVVPNLLLSS-PAEI-RLPLRWIAILS 233 (325)
T ss_pred CCCCE----EEECCCCCCHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCEEECCCCCCC-CCCC-HHHHHHHHHHH
T ss_conf 78866----99539983009999999997599--88997357665642167641536877457-5300-68899999996
Q ss_pred HHCCCCCCEEE-EHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC-----HHHHHHHHHHCCCC
Q ss_conf 96868721423-11565165689999980998899778665158889-----89999999982985
Q gi|254780485|r 264 ILMPKSRLRLA-AGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS-----YNKDTILFNRLGLI 323 (328)
Q Consensus 264 L~lP~~~i~i~-~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~-----~~~~~~~i~~~G~~ 323 (328)
-..+ ++|. .|=..-+.|. -.-+.+||+.+-++--+ -..|+. .++..+.+++-||.
T Consensus 234 ~~~~---ipIiG~GGI~s~~Da-~e~ilAGAsaVQv~TA~-~~~G~~i~~~i~~eL~~~m~~~G~~ 294 (325)
T cd04739 234 GRVK---ASLAASGGVHDAEDV-VKYLLAGADVVMTTSAL-LRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred CCCC---CCEEEECCCCCHHHH-HHHHHCCCCHHHEEHHH-HHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 4689---898888895989999-99998098876143234-6418379999999999999983999
No 141
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=93.23 E-value=0.7 Score=25.59 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEC-C---C
Q ss_conf 243354777564100068579999999999649-838997303688874428999998876213688-324102-5---6
Q gi|254780485|r 72 CNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL-ETCMTL-G---M 145 (328)
Q Consensus 72 Caf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~-~i~~~~-g---~ 145 (328)
|=+.+... ...| --+.|+|.+.++.++..- .-...+|..|++|.. -+.+.++++..++.+. +|.++. | .
T Consensus 78 CFa~A~~a--g~vY-Ept~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv--r~DL~eiv~~a~e~g~~hVqinTnGirlA 152 (475)
T COG1964 78 CFAYAEEA--GYIY-EPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL--RDDLIEIIKIAREEGYDHVQLNTNGIRLA 152 (475)
T ss_pred CCCCHHHC--CCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--HHHHHHHHHHHHHCCCCEEEECCCCEEEC
T ss_conf 75764326--8614-7779999999999985389998326722898664--35589999977656861899825750201
Q ss_pred CCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC---CCEEEECCCC-CHHHHHHHH
Q ss_conf 99999998741576069751343-7777320588889899999999999879855---7707866898-999999999
Q gi|254780485|r 146 LSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKV---CCGGILGLGE-MIDDRIDML 218 (328)
Q Consensus 146 ~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~---~sg~l~G~gE-t~eeri~~l 218 (328)
.+.+..++|++||+..+.+..+. .+..+.+. -|+=.. +++..+++|+.+ -.|.+=|..+ ...+++++.
T Consensus 153 ~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~----~~eIk~-alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa 225 (475)
T COG1964 153 FDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN----HWEIKQ-ALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFA 225 (475)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCCCHHHH----HHHHHH-HHHHHHHCCCCCEEEEEHHHCCCCHHHHHHHHHHH
T ss_conf 37789988986588579994278998621767----755689-99987754887289971052156747777899998
No 142
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.10 E-value=0.73 Score=25.46 Aligned_cols=203 Identities=17% Similarity=0.151 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC
Q ss_conf 799999999996498389973036--888744289999988762136883241025699999998741576069751343
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAW--REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT 168 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~--~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let 168 (328)
+..++.|+...+.|+.+++++--. ........+.+.++.+ ..++.+.+--|..+.+..+++.++|++.+.++-.+
T Consensus 31 ~dP~~~a~~~~~~Ga~~lhivDLd~a~~g~~~n~~~I~~i~~---~~~~pi~vGGGIrs~~~i~~~l~~Ga~kvvigs~~ 107 (240)
T PRK13585 31 GDPVEVAKRWVDAGAKTLHLVDLDGAFEGSRKNADIIEKIVE---ATDVSIQLGGGIRSVEDAASLLDLGVDRVILGTAA 107 (240)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 899999999998799979999897721189444999999997---37977899788587999999997699899939811
Q ss_pred --CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf --7777320588889899999999999879855770786689---89999999999997408888602054112048741
Q gi|254780485|r 169 --SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLG---EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 169 --~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
.|++..++......+... +++..--+-++=+| .+..+..+.+..+.+++. ..+-+ --+-..||
T Consensus 108 ~~~~~~~~~i~~~~G~~~iv--------vsiD~k~~~v~~~gw~~~~~~~~~e~~~~~~~~g~--~eii~-tdI~~dGt- 175 (240)
T PRK13585 108 IENPELVRELSDEFGSERVM--------VSLDAKDGEVVIEGWTESTGKDPVEWAQRFEELGA--GSILF-TNVDVEGL- 175 (240)
T ss_pred HHCCHHHHHHHHHHCCCEEE--------EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC--CEEEE-EEECCHHH-
T ss_conf 31842889999873972179--------99993065023247656788635577788886387--35898-64233223-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 2445687989999999999996868721423115651656899999809988997786651588898999999998
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
+ .....+.++-++- . .+..+.+++|- +-..+...+ -..|+++.++|--+ -.+.-+.+|.++..++
T Consensus 176 ~----~G~d~~~~~~i~~--~--~~~pviasGGv-~s~~di~~l-~~~g~~gvivG~Al-~~g~i~l~e~~~~~~~ 240 (240)
T PRK13585 176 L----QGVNPEPVRELVD--S--VDIPVIASGGV-TSLDDVKAL-KEAGAAGVVVGSAL-YKGKFTLEEALEAAED 240 (240)
T ss_pred H----CCCCHHHHHHHHH--H--CCCCEEEECCC-CCHHHHHHH-HHCCCCEEEEEHHH-HCCCCCHHHHHHHHHC
T ss_conf 2----5789899999998--6--89999998899-999999999-97899789987687-6799789999999649
No 143
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=93.05 E-value=0.74 Score=25.41 Aligned_cols=197 Identities=19% Similarity=0.211 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCC-CHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 8579999999999649838997-3036888744-2899999887621368832410256999999987415760697513
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCM-GAAWREPKER-DLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~-~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
+.-.+.++++...+.|+..+++ +.-|+.-+.. .-...++.++...+....+|+-+-. .+..+..+.++|++.+..-.
T Consensus 14 d~~~l~~~i~~l~~~g~~~lHiDImDG~FVpn~t~g~~~v~~i~~~t~~~~DvHLMv~~-P~~~i~~~~~~g~d~I~~H~ 92 (220)
T PRK05581 14 DFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVEN-PDRYVPDFAKAGADIITFHV 92 (220)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEC-HHHHHHHHHHCCCCEEEECC
T ss_conf 99999999999997699989995757844775563999999998418996478999718-88879999973998899816
Q ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC
Q ss_conf 43777732058888989999999999987985577078668989999999999997408888602054112048741244
Q gi|254780485|r 167 DTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328)
Q Consensus 167 et~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328)
|+... ..++++..++.|+++ |+-+.. +|.-+.++-+. ..++ .|-+.- -.||- .+
T Consensus 93 Ea~~~-------------~~~~i~~ik~~g~k~--Glalnp-~T~~~~l~~~l--~~iD----~VlvMt--V~PGf--~G 146 (220)
T PRK05581 93 EASEH-------------IHRLLQLIKEAGIKA--GLVLNP-ATPLEYLEYVL--PLLD----LVLLMS--VNPGF--GG 146 (220)
T ss_pred CCCCC-------------HHHHHHHHHHCCCCE--EEEECC-CCCHHHHHHHH--HHHC----EEEEEE--ECCCC--CC
T ss_conf 75027-------------999999999749970--467669-99989999998--7415----258998--65887--87
Q ss_pred CCCCCHHHHHHHHHHHHHHC----CCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 56879899999999999968----68721423115651656899999809988997786651588898999999998
Q gi|254780485|r 247 NKKVDPIEHVRIISVARILM----PKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 247 ~~~~~~~e~lr~iAi~RL~l----P~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
.+- -.+.+.-+.-+|=+. ++..|.+-+| +..+.......+|||.++.|.++-.+. .+.+.++.+|+
T Consensus 147 Q~f--~~~~l~ki~~l~~~~~~~~~~~~I~VDGG---In~~~i~~l~~~Gad~~V~GS~iF~~~--d~~~~i~~lk~ 216 (220)
T PRK05581 147 QKF--IPEVLEKIREVRKLIDERGLDILIEVDGG---VNAENIKECAEAGADVFVAGSAVFGAP--DYKEAIDELRA 216 (220)
T ss_pred CCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECC---CCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHHH
T ss_conf 645--56699999999999984599755999789---898999999977999999794885799--99999999999
No 144
>KOG2550 consensus
Probab=92.85 E-value=0.79 Score=25.23 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 799999999996498389973036888744289999988762136883241025-6999999987415760697513437
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNIDTS 169 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~let~ 169 (328)
|+-....+...+.|..-+++-++.. .-.|.+++|+-||+..|++.+-.| ..+.++.+.|-++|+|.+.+...+-
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqG-----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsG 324 (503)
T KOG2550 250 DDDKERLDLLVQAGVDVVILDSSQG-----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSG 324 (503)
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCC-----CCHHHHHHHHHHHHHCCCCEEECCCEEEHHHHHHHHHCCCCEEEECCCCC
T ss_conf 3016778886634886899966888-----50457999999986688863431655338889999873676057525567
Q ss_pred -----HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCE----------EECC
Q ss_conf -----7773205888898999999999998798557707866898999999999999740888860----------2054
Q gi|254780485|r 170 -----ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPES----------IPIN 234 (328)
Q Consensus 170 -----~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~----------v~~~ 234 (328)
.+.-.-.+|..+ .-.++.+.|+..|+++-+- |-..+..+++..| .|+..+.+ .| .
T Consensus 325 SiCiTqevma~GrpQ~T--AVy~va~~A~q~gvpviAD---GGi~~~Ghi~KAl----~lGAstVMmG~lLAgtTEap-G 394 (503)
T KOG2550 325 SICITQKVMACGRPQGT--AVYKVAEFANQFGVPCIAD---GGIQNVGHVVKAL----GLGASTVMMGGLLAGTTEAP-G 394 (503)
T ss_pred CEEEECEEEECCCCCCC--CHHHHHHHHHHCCCCEECC---CCCCCCHHHHHHH----HCCCHHHHCCCHHCCCCCCC-C
T ss_conf 50545301232677620--0326999997649965506---8758731778887----53850631041101023588-6
Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 1120487412445687989999999999996868721423
Q gi|254780485|r 235 LLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLA 274 (328)
Q Consensus 235 ~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~ 274 (328)
-+....|-.++....+...+...--.-.|.+-....+.++
T Consensus 395 eyf~~~g~r~KkyrGMGSl~AM~~~s~~rY~~e~dkvkiA 434 (503)
T KOG2550 395 EYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKIA 434 (503)
T ss_pred CEEEECCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 1474247343201176558877512011003665447641
No 145
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=92.75 E-value=0.81 Score=25.13 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 99999999996498389973036888744289999988762136883241025-69999999874157606975134377
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNIDTSE 170 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~let~~ 170 (328)
+..+.++.+.+.|+--+++=+.+. .-.+.+++++.+|+.++.+.+-+| ..+.+..+.|.++|+|.+.+.+..-
T Consensus 227 d~~eR~~aLv~AGvDvlvIDtAHG-----hS~~vi~~vk~iK~~~p~~~viaGNvaT~~~a~~Li~aGad~ikvGiG~G- 300 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVIDTAHG-----HQEKMLEAIRAVRALDPGVPLVAGNVVTAEGTRDLVEAGADIVKVGVGPG- 300 (479)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCEEECCCCCC-
T ss_conf 589999999976998999754576-----64899999999984089885787432029999999973999763155578-
Q ss_pred HHHHCCCCCC--------CHHHHHHHHHHHHHCCCCC
Q ss_conf 7732058888--------9899999999999879855
Q gi|254780485|r 171 RFYPHVTTTH--------TFEDRLQTLENVRKSGIKV 199 (328)
Q Consensus 171 ~~~~~~~~~~--------~~~~~l~~~~~a~~~G~~~ 199 (328)
.+|++. ....-.++-+.|++.|+++
T Consensus 301 ----SiCtTr~v~gvG~pq~tAi~~~a~~a~~~gvpi 333 (479)
T PRK07807 301 ----AMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479)
T ss_pred ----CCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf ----324346323778860999999999987569978
No 146
>PRK01659 consensus
Probab=92.62 E-value=0.85 Score=25.02 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--....... ....++++.+ ++.++.+.+.-|..+.++.+.+.++|++.+.++-..
T Consensus 31 DP~~~ak~~~~~Gad~ihivDld~a~~g~--~~n~~~I~~i~~~~~ipi~vGGGIrs~e~~~~~l~~GadkViigs~a~~ 108 (252)
T PRK01659 31 DPVEIAAAYNEAGADELVFLDITATHEGR--KTMVDVVEKVAAKVFIPLTVGGGISSVKDMKRLLRAGADKVSINSAAVL 108 (252)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCCEEEECCEECHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 99999999998799999999467665688--6489999999975697479963320068888987448855983177752
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-C------------CCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 777732058888989999999999987985-5------------770786689---899999999999974088886020
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-V------------CCGGILGLG---EMIDDRIDMLLTLANLSTPPESIP 232 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~------------~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v~ 232 (328)
.|.+..+. +.+.|=+ + +.+.++-+| .+.-+..+++..+.+++. ..+-
T Consensus 109 n~~~i~~~---------------~~~~G~q~IvvsiD~k~~~~~~~~~i~~~g~~~~~~~~~~~~i~~~~~~g~--geil 171 (252)
T PRK01659 109 RPELITEG---------------ADHFGSQCIVVAIDAKYDAEAGKWNVYTHGGRVDTGLDAIAWAKEAVRLGA--GEIL 171 (252)
T ss_pred CHHHHHHH---------------HHHCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCC--CEEE
T ss_conf 91532146---------------764686326999998970568868999689957677779999999997699--7799
Q ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHH
Q ss_conf 54112048741244568798999999999999686872142311565165689999980998899778665158889899
Q gi|254780485|r 233 INLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNK 312 (328)
Q Consensus 233 ~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~ 312 (328)
+ --+-..|| +. .++ .+.++-++- .. +..+.+++|- +-..++..+.-..+++++++|.-+ --+.-++.+
T Consensus 172 ~-tdI~rDG~-~~---G~d-l~l~~~i~~---~~-~~PiIasGGi-~~~~di~~l~~~~~v~gv~~g~~~-~~~~~sl~e 239 (252)
T PRK01659 172 L-TSMDADGT-KN---GFD-LRLTKAISE---AV-SVPVIASGGA-GNADHMVEVFQKTTADAALAASIF-HYGETSIKE 239 (252)
T ss_pred E-EEECCCCC-CC---CCC-HHHHHHHHH---HC-CCCEEEEECC-CCHHHHHHHHHHCCCCEEEEHHHH-HCCCCCHHH
T ss_conf 9-98814585-47---689-899999998---68-9999999179-999999999974898265575477-779999999
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999982985
Q gi|254780485|r 313 DTILFNRLGLI 323 (328)
Q Consensus 313 ~~~~i~~~G~~ 323 (328)
..+.+++.|+.
T Consensus 240 ~k~~L~~~~~~ 250 (252)
T PRK01659 240 VKAKLREAGVN 250 (252)
T ss_pred HHHHHHHCCCC
T ss_conf 99999987498
No 147
>KOG4039 consensus
Probab=92.48 E-value=0.16 Score=29.89 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH
Q ss_conf 7868342321243354-77756410006857999999999964983899730368887442899
Q gi|254780485|r 62 TGGCPENCGYCNQSVH-NKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~-~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328)
||.-..+-.||+.... -+++.+..+..+.|.++..|+.+++.|++++.++++-.-++.+.+-|
T Consensus 79 ~~~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY 142 (238)
T KOG4039 79 TNEQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLY 142 (238)
T ss_pred HHHCCCCEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEE
T ss_conf 6502885689961135555566753761538888899998858970899974267886434202
No 148
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.29 E-value=0.93 Score=24.75 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=12.8
Q ss_pred EEEHHHHHCHHHHHHHHHHCCCEEEECCE
Q ss_conf 23115651656899999809988997786
Q gi|254780485|r 273 LAAGRAMMSDELQALCFFSGANSIFVGDT 301 (328)
Q Consensus 273 i~~~~~~~~~~~~~~~L~~GaN~~~~g~~ 301 (328)
|+-|=.+...+. -+||-+||+.+|+|..
T Consensus 345 IADGGIr~sGDi-~KAlAaGAd~VMlGsl 372 (499)
T PTZ00314 345 IADGGIRSSGDI-VKALALGASCVMLGSM 372 (499)
T ss_pred EECCCCCCHHHH-HHHHHCCCCEEEECCC
T ss_conf 914784643189-9998728987860841
No 149
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=92.10 E-value=0.98 Score=24.61 Aligned_cols=118 Identities=26% Similarity=0.298 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHCCCCCCEEEECCC-------CCHHHHHHHHCCCCC
Q ss_conf 8579999999999649838997303688-87442899999887621368832410256-------999999987415760
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWRE-PKERDLSIIVDMIKGVKSLGLETCMTLGM-------LSFEQAQILSKAGLD 160 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~-~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-------~~~~~~~~Lk~aG~~ 160 (328)
+.|+..+..+.+.+.|++++........ +.....+.+-++++..++.++.+.+-+.+ .+.+.+..|++.|++
T Consensus 11 ~~e~~~~yi~~a~~~Gf~~iFTSL~i~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~lGi~ 90 (357)
T pfam05913 11 TFEEDKAYIKLAAKLGFTRIFTSLHIPEDDKEEYLERLKELIKYAKELGMEVIADISPSVLKQLGISYDDLSFLKELGVT 90 (357)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 87999999999998699899604775788879999999999999998799999987989998819997889999977998
Q ss_pred EEEEEC---------------------CC---------------------CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 697513---------------------43---------------------777732058888989999999999987985
Q gi|254780485|r 161 YYNHNI---------------------DT---------------------SERFYPHVTTTHTFEDRLQTLENVRKSGIK 198 (328)
Q Consensus 161 ~~~~~l---------------------et---------------------~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~ 198 (328)
.+-+.. -| .=.+|++--++-+++.-.+.-+..|+.|++
T Consensus 91 glRlD~Gf~~~eia~ls~n~l~I~LNASti~~~~l~~l~~~~~n~~~l~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~ 170 (357)
T pfam05913 91 GLRLDYGFTGEEIAELSKNPLKIELNASTITTEYLDNLLSYGANFENLEACHNFYPRPYTGLSYEFFLEKNRWFKKYGIK 170 (357)
T ss_pred EEEECCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99977999989999972799679997864999999999980998789799744479988788999999999999977996
Q ss_pred CCCEEEECC
Q ss_conf 577078668
Q gi|254780485|r 199 VCCGGILGL 207 (328)
Q Consensus 199 ~~sg~l~G~ 207 (328)
+. .++-|.
T Consensus 171 ~~-AFI~g~ 178 (357)
T pfam05913 171 TA-AFIPGD 178 (357)
T ss_pred EE-EEEECC
T ss_conf 89-997279
No 150
>PRK02621 consensus
Probab=91.64 E-value=1.1 Score=24.27 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 999999999964983899730368887442899999887621-36883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--......+ ....++++.+. +.++.+.+--|..+.++.+++.++|++.+.++=-.
T Consensus 31 dP~~~ak~~~~~gad~lhivDld~a~~~~--~~~~~~I~~i~~~~~ipi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~ 108 (254)
T PRK02621 31 DPVELACRYSQAGADELVFLDITATHEGR--ATLIDVVYRTAEQVFIPLTVGGGISSLEGIKELLRAGADKVSLNSAAVR 108 (254)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCCEEEECCEEEHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 99999999998599999998266765675--4289999999986798589963353579999999749998999886764
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCE-------------EEEC---CCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 777732058888989999999999987985-5770-------------7866---8989999999999997408888602
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCG-------------GILG---LGEMIDDRIDMLLTLANLSTPPESI 231 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg-------------~l~G---~gEt~eeri~~l~~lr~l~~~~~~v 231 (328)
.|++..++ +...|-+ +..+ -+|- .-.|.-+..+++..+.+++. ..+
T Consensus 109 np~~~~~~---------------~~~fG~q~Iv~siD~k~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~g~--gei 171 (254)
T PRK02621 109 DPDLVRQA---------------SDRFGSQCIVVAIDARRRKPDNPGWDVYVRGGRENTGLDAVEWAEEVAERGA--GEI 171 (254)
T ss_pred CCCHHHHH---------------HHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC--CEE
T ss_conf 73544556---------------8756984339999955353478862899668845577679999988776288--969
Q ss_pred ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHH
Q ss_conf 05411204874124456879899999999999968687214231156516568999998099889977866515888989
Q gi|254780485|r 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYN 311 (328)
Q Consensus 232 ~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~ 311 (328)
-+ .-+-..|| + .....+.++-++- . . +..+.+++|- +-..++.+..-..|+.++++|.-+ -.+--+++
T Consensus 172 l~-tdI~~DGt-~----~G~d~~l~~~i~~--~-~-~iPvi~sGGi-~s~edi~~~l~~~~v~gvivG~al-~~~~~~l~ 239 (254)
T PRK02621 172 LL-TSMDGDGT-Q----AGYDLELTRAIAE--A-V-EIPVIASGGA-GCCDHIAEALTEGKAEAALLASLL-HYGQLTIA 239 (254)
T ss_pred EE-EEECCCCC-C----CCCCHHHHHHHHH--H-C-CCCEEEECCC-CCHHHHHHHHHHCCCEEEEEHHHH-HCCCCCHH
T ss_conf 99-88804797-5----7688699999997--1-7-9979997799-999999999985898198775787-88999999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999982985
Q gi|254780485|r 312 KDTILFNRLGLI 323 (328)
Q Consensus 312 ~~~~~i~~~G~~ 323 (328)
+..+.++..|+.
T Consensus 240 e~K~~l~~~~i~ 251 (254)
T PRK02621 240 EIKADLLARGLP 251 (254)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999977799
No 151
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=91.54 E-value=1.1 Score=24.20 Aligned_cols=185 Identities=19% Similarity=0.225 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE-ECCCCC-CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 8579999999999649838997-303688-87442899999887621368832410256999999987415760697513
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCM-GAAWRE-PKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l-~~~~~~-~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
+.-.+.++.+...+.|+..+++ +.-|+- |....-...++.++...+....+|+-+-. .+..+..+.++|++.+..-.
T Consensus 10 d~~~l~~~i~~~~~~g~d~lHiDimDG~Fvpn~t~g~~~v~~i~~~t~~~~DvHLMv~~-P~~~i~~~~~~g~d~I~~H~ 88 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVEN-PERYIEAFAKAGADIITFHA 88 (211)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHCCCEEEECC
T ss_conf 99999999999997699989995757972786675989999998757997058998718-87769999970998899864
Q ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC
Q ss_conf 43777732058888989999999999987985577078668989999999999997408888602054112048741244
Q gi|254780485|r 167 DTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328)
Q Consensus 167 et~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328)
|+.+ +..++++..++.|+++ |+-+... |.-+.+..+.. .++ .|-+. .-.||. .+
T Consensus 89 E~~~-------------~~~~~i~~ik~~g~~~--Glal~p~-T~~~~l~~~l~--~~D----~vliM--tV~PGf--~G 142 (211)
T cd00429 89 EATD-------------HLHRTIQLIKELGMKA--GVALNPG-TPVEVLEPYLD--EVD----LVLVM--SVNPGF--GG 142 (211)
T ss_pred CCCC-------------CHHHHHHHHHHCCCCC--EEEECCC-CCHHHHHHHHH--HHC----EEEEE--EECCCC--CC
T ss_conf 3220-------------8999999999739872--3575489-99899999997--515----22798--746887--88
Q ss_pred CCCCCHHHHHHHHHHHHHHCC----CCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECC
Q ss_conf 568798999999999999686----87214231156516568999998099889977866515
Q gi|254780485|r 247 NKKVDPIEHVRIISVARILMP----KSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTA 305 (328)
Q Consensus 247 ~~~~~~~e~lr~iAi~RL~lP----~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~ 305 (328)
.+ -..+.+.-+.-+|-+.| +..|.+-+| +..+.-.....+|||.++.|.++-..
T Consensus 143 Q~--f~~~~~~ki~~l~~~~~~~~~~~~I~vDGG---I~~~~i~~l~~~Gad~~V~GS~iF~~ 200 (211)
T cd00429 143 QK--FIPEVLEKIRKLRELIPENNLNLLIEVDGG---INLETIPLLAEAGADVLVAGSALFGS 200 (211)
T ss_pred CC--CCHHHHHHHHHHHHHHHHCCCCEEEEEECC---CCHHHHHHHHHCCCCEEEECHHHHCC
T ss_conf 75--456799999999999986499859999678---59899999998599999979377589
No 152
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.51 E-value=1.1 Score=24.18 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHCCC-CCCEEEECCCCCHHH----HHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 289999988762136-883241025699999----998741576069751343777732058888989999999999987
Q gi|254780485|r 121 DLSIIVDMIKGVKSL-GLETCMTLGMLSFEQ----AQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS 195 (328)
Q Consensus 121 ~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~~----~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~ 195 (328)
.++++++.++..++. +..+.+|+.-.+.++ .+++.++|+|.+.+|+-. +..-+........+.-.++++..++.
T Consensus 85 g~e~~l~~i~~~k~~~~~pvIaSi~g~s~ee~~~~a~~~e~~gadaiElNis~-~~~~~~~~~~~~~~~~~~iv~~V~~~ 163 (333)
T PRK07565 85 GPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEEAGADALELNIYY-LPTDPDISGAEVEQRYLDILRAVKSA 163 (333)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89999999998775059845987477998999999999976499889997667-79886544465078899999999864
Q ss_pred -CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-CCCE----------EECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf -9855770786689899999999999974088886020-5411----------204874124456879899999999999
Q gi|254780485|r 196 -GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-INLL----------IPIPGSKFEENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 196 -G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~~~~----------~p~~gt~l~~~~~~~~~e~lr~iAi~R 263 (328)
.+++ ++=+.-...+..+....+.+-+. +++. +|.+ .+.++..+.. +... --.||+++..+
T Consensus 164 ~~~Pv----~vKLsPn~tdi~~iA~aa~~~Ga--dgv~~iNT~~~~~Id~e~~~~~~~~~lSg-p~~~-~~alr~v~~v~ 235 (333)
T PRK07565 164 VSIPV----AVKLSPYFSNLANMAKRLDAAGA--DGLVLFNRFYQPDIDLETLEVVPGLVLST-PAEL-RLPLRWIAILS 235 (333)
T ss_pred CCCCE----EEECCCCCCHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCEEECCCCCCC-CCCC-CHHHHHHHHHH
T ss_conf 68856----87359982109999999997499--88998436665633155443736866677-4312-07889999996
Q ss_pred HHCCCCCCEEEE-HHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC-----HHHHHHHHHHCCCC
Q ss_conf 968687214231-1565165689999980998899778665158889-----89999999982985
Q gi|254780485|r 264 ILMPKSRLRLAA-GRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS-----YNKDTILFNRLGLI 323 (328)
Q Consensus 264 L~lP~~~i~i~~-~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~-----~~~~~~~i~~~G~~ 323 (328)
=..+ |+|.+ |=..-+.+. -.-+.+||+.+-+|--+ -..|+. .+++.+.+++-||.
T Consensus 236 ~~~~---ipIiG~GGI~sg~Da-iE~ilAGAsaVQv~Ta~-~~~G~~v~~~i~~eL~~~m~~~G~~ 296 (333)
T PRK07565 236 GRVG---ADLAATTGVHDAEDV-IKMLLAGADVVMIASAL-LRHGPDYIGTILAGLEDWMERHGYE 296 (333)
T ss_pred CCCC---CCEEEECCCCCHHHH-HHHHHCCCCHHEEEHHH-HHHCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 0469---898888895989999-99998098863362236-6537279999999999999983999
No 153
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=91.42 E-value=1.2 Score=24.12 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=107.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC--H----HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 6857999999999964983899730368887442--8----99999887621-368832410256999999987415760
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERD--L----SIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~--~----~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
-|.|++++.|+..++.|++-+ -+|-..|..++ | +.=+++++.++ +.++.+... .++..++....+. +|
T Consensus 129 ES~eQi~~~A~~vk~~G~~~l--RgGa~KPRTsPysFqGlG~eGL~~L~~a~~e~gl~vvTE--V~~~~~ve~~~~y-vD 203 (360)
T PRK12595 129 ESYEQVAAVAQALKAKGLKLL--RGGAFKPRTSPYDFQGLGVEGLKILKQVADEYDLAVISE--IVNPNDVEVALDY-VD 203 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCEE--ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHH-CC
T ss_conf 789999999999997597557--255568999997657684579999999999859972798--5788899999974-86
Q ss_pred EEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCHHHHHHHHHHHHHCCCCCCEEECC--CE
Q ss_conf 697513437777320588889899999999999879855770786--68989999999999997408888602054--11
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GLGEMIDDRIDMLLTLANLSTPPESIPIN--LL 236 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~gEt~eeri~~l~~lr~l~~~~~~v~~~--~~ 236 (328)
.+-++--+ ... ...++.+.+.+.++ |+ |+.-|.++.+.-..++-.-+- ++-+-+- +.
T Consensus 204 ilqIGARn----------mqN----f~LLk~vg~~~kPV----LlKrg~~ati~ewl~AaEyi~~~Gn-~~vilceRGir 264 (360)
T PRK12595 204 VIQIGARN----------MQN----FELLKAAGRVNKPV----LLKRGLSATIEEFIYAAEYIMSQGN-DQIILCERGIR 264 (360)
T ss_pred EEEECCHH----------CCC----HHHHHHHHCCCCCE----EEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCC
T ss_conf 89888410----------359----99999986139937----9607999999999999999986799-87899917756
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC----CEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE----CCCC-
Q ss_conf 2048741244568798999999999999686872----142311565165689999980998899778665----1588-
Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARILMPKSR----LRLAAGRAMMSDELQALCFFSGANSIFVGDTLL----TAKN- 307 (328)
Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~----i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~----t~~g- 307 (328)
+....| .-+ -.+..+++.+- ++... +.=++||-.+-..+.+.++.+||||+|++-..- -+++
T Consensus 265 T~e~~t------Rnt--ldl~avp~~k~-~thLPVivDPSH~~G~r~lv~~~a~aa~a~GaDGlmIEvHp~P~~AlSD~~ 335 (360)
T PRK12595 265 TYEKAT------RNT--LDISAVPILKQ-ETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSA 335 (360)
T ss_pred CCCCCC------CCC--CCHHHHHHHHC-CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCC
T ss_conf 778766------889--88678899864-999998989965215575899999999974999799986688232158710
Q ss_pred --CCHHHHHHHHHHC
Q ss_conf --8989999999982
Q gi|254780485|r 308 --PSYNKDTILFNRL 320 (328)
Q Consensus 308 --~~~~~~~~~i~~~ 320 (328)
-++++..+|++++
T Consensus 336 Qql~~~~f~~l~~~l 350 (360)
T PRK12595 336 QQMDIPEFDRFYDEL 350 (360)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 048999999999999
No 154
>KOG2535 consensus
Probab=91.37 E-value=1.2 Score=24.09 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHCCCE----EEEEECCC-CCCCCCCHHHHHH----HHHHHCCC-----------CCC--EEEEC--
Q ss_conf 6857999999999964983----89973036-8887442899999----88762136-----------883--24102--
Q gi|254780485|r 88 INVDQVLKEAKNAKENGAT----RYCMGAAW-REPKERDLSIIVD----MIKGVKSL-----------GLE--TCMTL-- 143 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~----~~~l~~~~-~~~~~~~~~~~~e----~i~~i~~~-----------~~~--i~~~~-- 143 (328)
-..++....+++.+..|.. ++.+.+|. ...+..+-++++. +++..... ... +.+.+
T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIET 229 (554)
T KOG2535 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIET 229 (554)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 98888888999999837764206899845622058088899999988877427875478999874031234035689612
Q ss_pred --CCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC--HHHHHHHH
Q ss_conf --5699999998741576069751343-777732058888989999999999987985577078668989--99999999
Q gi|254780485|r 144 --GMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEM--IDDRIDML 218 (328)
Q Consensus 144 --g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt--~eeri~~l 218 (328)
..-...++..|-.-|..+..++..+ .++....--.+|+....-++...|+.+|+++.++||=-+..- ..|.....
T Consensus 230 RPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~ 309 (554)
T KOG2535 230 RPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFK 309 (554)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCHHHHHHHHH
T ss_conf 77422126699998608713785100357776521668846899987766300368245023278999985041299999
Q ss_pred HHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHH
Q ss_conf 99974088886020541120487412445------6879899999999
Q gi|254780485|r 219 LTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIIS 260 (328)
Q Consensus 219 ~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iA 260 (328)
.....-...+++.-+-+..-+.||-+... ..-++.+..-.+|
T Consensus 310 E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvA 357 (554)
T KOG2535 310 EYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVA 357 (554)
T ss_pred HHHCCCCCCCCCCEECCEEEEECCCHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 983196768787412226999344279887528866689899999999
No 155
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=91.36 E-value=1.2 Score=24.08 Aligned_cols=195 Identities=13% Similarity=0.157 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCH-HHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECC
Q ss_conf 79999999999649838997-303688874428-9999988762-13688324102569999999874157606975134
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCM-GAAWREPKERDL-SIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~-~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328)
-.+.++++.+.+.|+..+++ +.-|+.-+...+ -..++.+|.. ....+.+|+-+ .-.+..+..+.++|++.+..-.|
T Consensus 16 ~~L~~ei~~l~~~g~d~iHiDImDG~FVpN~t~g~~~i~~ir~~~~~~plDvHLMv-~~P~~~i~~~~~aGad~i~~H~E 94 (223)
T PRK08745 16 ARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMV-EPVDRIVPDFADAGATTISFHPE 94 (223)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE-CCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999999769998998276797077557095999999961899753778983-39899999999739978999606
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC
Q ss_conf 37777320588889899999999999879855770786689899999999999974088886020541120487412445
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN 247 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~ 247 (328)
+.+. . -++++..++.|++. |+-+... |.-+.++-+ |.++ +.|-+.-. .||- .+.
T Consensus 95 a~~~----------~---~~~i~~ik~~g~k~--GlalnP~-T~~~~l~~~--l~~~----D~VliMtV--~PGf--~GQ 148 (223)
T PRK08745 95 ASRH----------V---HRTIQLIKSHGCQA--GLVLNPA-TPVDILDWV--LPEL----DLVLVMSV--NPGF--GGQ 148 (223)
T ss_pred CCCC----------H---HHHHHHHHHCCCCE--EEEECCC-CCHHHHHHH--HHHC----CEEEEEEE--CCCC--CCC
T ss_conf 4429----------9---99999999839844--6774699-987999998--8647----98999875--6998--875
Q ss_pred CCCCHHHHHHHHHHHHHHCC----CCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 68798999999999999686----8721423115651656899999809988997786651588898999999998
Q gi|254780485|r 248 KKVDPIEHVRIISVARILMP----KSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP----~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
+- -.+.+.-|.-.|-+.+ +..|-+-+ .+..+.-.....+|||.++.|.++-... .+.+.++-+|+
T Consensus 149 ~f--~~~~l~KI~~l~~~~~~~~~~~~I~VDG---GI~~~ti~~l~~aGad~~V~GSaiF~~~--d~~~~i~~lr~ 217 (223)
T PRK08745 149 AF--IPSALDKLRAIRKKIDALGKPIRLEIDG---GVKADNIGAIAAAGADTFVAGSAIFNAP--DYAQVIAQMRA 217 (223)
T ss_pred CC--CHHHHHHHHHHHHHHHHCCCCCEEEEEC---CCCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHHH
T ss_conf 45--6889999999999998649994599978---8798999999986999999741775799--99999999999
No 156
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=91.21 E-value=1.2 Score=23.98 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECC-CCCC-----CCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCE
Q ss_conf 68579999999999649838997303-6888-----74428999998876213688324102569999999874157606
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAA-WREP-----KERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY 161 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~-~~~~-----~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~ 161 (328)
.+.++.++.+++..+.|+.-+-+++- .++. ...+.+.+...++.+++.. .+.+|+.+...+..+.--++|++.
T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~i~~~~-~v~iSIDT~~~~Va~~ale~Ga~i 113 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCCE
T ss_conf 8999999999999988996999798258998986898999999999999999735-972999799889999999639788
Q ss_pred EEE--ECCCCHHHHHC-------C---C----CC-----CCHHH-------HH-HHHHHHHHCCCCCCCEEE---ECCCC
Q ss_conf 975--13437777320-------5---8----88-----89899-------99-999999987985577078---66898
Q gi|254780485|r 162 YNH--NIDTSERFYPH-------V---T----TT-----HTFED-------RL-QTLENVRKSGIKVCCGGI---LGLGE 209 (328)
Q Consensus 162 ~~~--~let~~~~~~~-------~---~----~~-----~~~~~-------~l-~~~~~a~~~G~~~~sg~l---~G~gE 209 (328)
+|- .+. .|+.+.. + | |+ ..|++ |+ +.++.+.+.|++-.--++ +|.|-
T Consensus 114 INDIsg~~-d~~~~~~va~~~~~~vlmH~~g~p~~m~~~~~y~dvi~~v~~~f~~~i~~~~~~Gi~~~~IilDPGiGFgK 192 (282)
T PRK11613 114 INDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGK 192 (282)
T ss_pred EECCCCCC-CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 86632124-86599999972998899806899855332676352799999999999999998799947499806877678
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 9999999999997408
Q gi|254780485|r 210 MIDDRIDMLLTLANLS 225 (328)
Q Consensus 210 t~eeri~~l~~lr~l~ 225 (328)
+.++=++.|.+|..+.
T Consensus 193 ~~~~n~~ll~~l~~~~ 208 (282)
T PRK11613 193 NLSHNYQLLARLAEFH 208 (282)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 8788999998389985
No 157
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=91.19 E-value=1.2 Score=23.97 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHCCCEEEEE-ECCCCCCCC-CCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9999999999649838997-303688874-42899999887621368832410256999999987415760697513437
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCM-GAAWREPKE-RDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS 169 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l-~~~~~~~~~-~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~ 169 (328)
.+.++++.+.+.|+..+++ +.-|+--+. ..-...++.+|........+|.-+- -.+..+..+.++|++.+..-.|+.
T Consensus 14 ~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~ir~~t~~p~DvHLMv~-~P~~~i~~~~~~g~d~it~H~Ea~ 92 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHPLSFHLMVS-SPQRWLPWLAAIRPGWIFIHAESV 92 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999999999779998998288898277456298999999861899807999868-889999999972998599935677
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf 77732058888989999999999987985577078668989999999999997408888602054112048741244568
Q gi|254780485|r 170 ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328)
+. . .++++..++.|.+. |+-+-. .|.-+.+..+ +-++ +.|-++-- .||. .+.+-
T Consensus 93 ~~----------~---~~~i~~Ik~~g~k~--GlAlnP-~T~i~~~~~~--l~~v----D~VLvMtV--~PGf--~GQ~F 146 (210)
T PRK08005 93 QN----------P---SEILADIRAIGAKA--GLALNP-ATPLLPYRYL--ALQL----DALMIMTS--EPDG--RGQQF 146 (210)
T ss_pred CC----------H---HHHHHHHHHCCCEE--EEEECC-CCCHHHHHHH--HHCC----CEEEEEEE--CCCC--CCCCC
T ss_conf 69----------9---99999999749807--888379-9987998730--4007----98999877--8999--87211
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 7989999999999996868721423115651656899999809988997786651588898999999998
Q gi|254780485|r 250 VDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 250 ~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
-.+.+.-|.-.|-..|+..|.+=+| +..+.......+|||.++.|.++-.+. ...+-+.-+|+
T Consensus 147 --i~~~~~KI~~~r~~~~~~~I~vDGG---In~~t~~~~~~aGad~~V~GSaiF~~~--d~~~~i~~lr~ 209 (210)
T PRK08005 147 --IAAMCEKVSQSREHFPAAECWADGG---ITLRAARLLAAAGAQHLVIGRALFTTA--NYDVTLSQFTA 209 (210)
T ss_pred --CHHHHHHHHHHHHHCCCCCEEEECC---CCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHHC
T ss_conf --7889999999996287788899788---788999999986999999790653699--99999999863
No 158
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=90.76 E-value=1.3 Score=23.71 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEEEECC
Q ss_conf 857999999999964983899730368887442899999887621368832410256-9999999874157606975134
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~~~le 167 (328)
+.|-.++.++++.+.|+..+++--..+-..+.....++..+|..-...+++|.|... +....+..-.+||+|.+...+.
T Consensus 152 t~~yyv~~a~~l~~~Gad~I~ikD~aGll~P~~~~eLV~aLk~~~~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~~ 231 (463)
T PRK12331 152 TIDYFVKLAKEMQEIGADSICIKDMAGILTPYVAYELVKCIKENVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAIS 231 (463)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 69999999999996499889986786776889999999999974498569983688757999999999849999962353
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCC-------CCCEE-ECCCEEE
Q ss_conf 3777732058888989999999999987985577078668-9899999999999974088-------88602-0541120
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLST-------PPESI-PINLLIP 238 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~-------~~~~v-~~~~~~p 238 (328)
..-. . +.+.. -..+...++..|+.+ |+ -+...+..+++..+|+... ...++ +-....+
T Consensus 232 ~~s~----g-tsqP~--~~s~v~~l~~~~~~~------~ld~~~l~~i~~y~~~vr~~y~~~~~~~~~~~~~d~~v~~hq 298 (463)
T PRK12331 232 PFAG----G-TSQPA--TESMVIALQDLGYDT------GLDLEELSEIAEYFNPIRDHYREEGILNPKVKDVEPKTLIYQ 298 (463)
T ss_pred CCCC----C-CCCCC--HHHHHHHHHCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEC
T ss_conf 5467----9-78987--999999985389999------989999999999999999999874478875766774351236
Q ss_pred CCCCCCCCC-------CCC-CHHHHHHHHHHHHHHCCCCCCEEEEH
Q ss_conf 487412445-------687-98999999999999686872142311
Q gi|254780485|r 239 IPGSKFEEN-------KKV-DPIEHVRIISVARILMPKSRLRLAAG 276 (328)
Q Consensus 239 ~~gt~l~~~-------~~~-~~~e~lr~iAi~RL~lP~~~i~i~~~ 276 (328)
.||.-+.+. ... .-.|.++.++-.|-.+-+. +.++-+
T Consensus 299 ~PGGm~snl~~Ql~~~g~~dr~~eV~~e~~~Vr~~lG~~-~~VTP~ 343 (463)
T PRK12331 299 VPGGMLSNLLSQLKEQGLADKYEEVLAEVPKVRADLGYP-PLVTPL 343 (463)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-CEECCH
T ss_conf 873066789999997784767999999999999974999-835928
No 159
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=90.47 E-value=1.4 Score=23.54 Aligned_cols=196 Identities=14% Similarity=0.167 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCC-HHHHHHHHHH-HCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECC
Q ss_conf 79999999999649838997-30368887442-8999998876-213688324102569999999874157606975134
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCM-GAAWREPKERD-LSIIVDMIKG-VKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~-~~~~~e~i~~-i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328)
++-++++++....|+..+++ +.-|+.-+... -...++.+|. .+.....+|+-+-. .+..+..+.++|++.+..-.|
T Consensus 17 ~~ei~~~~~~~~~g~d~lHiDImDG~FVpN~t~g~~~v~~ir~~~~~~~lDvHLMv~~-P~~~i~~~~~~gad~I~~H~E 95 (224)
T PTZ00170 17 LDESQDVLSPEGGGADWLHVDVMDGHFVPNLSFGPPVVSSLRKHLPNTFLDVHLMVSD-PERWVDSFAKAGASQFTFHIE 95 (224)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECC-HHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999863405997899944058507765749789999997179986468998638-888799998628967998500
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC
Q ss_conf 37777320588889899999999999879855770786689899999999999974088886020541120487412445
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN 247 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~ 247 (328)
+... -.++++..++.|++.+ +-+- ..|.-+.++.+. .+. ..+.|-++-. .|| +.+.
T Consensus 96 ~~~~-------------~~~~i~~ik~~g~k~G--lAln-P~T~i~~l~~~l--~~~--~iD~VLlMsV--~PG--f~GQ 151 (224)
T PTZ00170 96 ATED-------------PKAVARKIRAAGMQVG--VALK-PKTPAEELFPLI--DAG--LVDMVLVMTV--EPG--FGGQ 151 (224)
T ss_pred CCCC-------------HHHHHHHHHHHCCCEE--EEEC-CCCCHHHHHHHH--HHC--CCCEEEEEEE--CCC--CCCC
T ss_conf 1339-------------9999999997147645--5607-999879999997--114--4578999855--699--8762
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHH
Q ss_conf 68798999999999999686872142311565165689999980998899778665158889899999999
Q gi|254780485|r 248 KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318 (328)
Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~ 318 (328)
+- ..+.+.-+.-.|-..|+..|.+-+| +..+.......+|||.++.|.++-.+.. +.+-++-+|
T Consensus 152 ~F--i~~~l~KI~~lr~~~~~~~I~VDGG---In~~ti~~l~~aGad~~V~GSaiF~~~d--~~~~i~~lr 215 (224)
T PTZ00170 152 SF--MHDMMPKVRQLRQRYPHLNIQVDGG---INPDTIDLAAEAGANVIVAGTSIFKAND--RKESIETLR 215 (224)
T ss_pred CC--CHHHHHHHHHHHHCCCCCEEEEECC---CCHHHHHHHHHCCCCEEEECHHHHCCCC--HHHHHHHHH
T ss_conf 14--5889999999985489975999589---9989999999869999997858867999--999999999
No 160
>TIGR00559 pdxJ pyridoxal phosphate biosynthetic protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm.
Probab=90.20 E-value=1.5 Score=23.39 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEE--------CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCC
Q ss_conf 685799999999996498389973--------036888744289999988762136883241025699999998741576
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMG--------AAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGL 159 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~--------~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~ 159 (328)
...||+.+.+.+.+... ..++|| +-++-+..+.-+.+.+.++.+++.|+.+++=+ ...++++.-=.+.|+
T Consensus 71 ~~~ee~~~~~~~~knkP-~~vTlVPe~r~evTtegGLDva~~~dkL~~~~~~~~~~GI~vSlFI-d~~~d~i~~A~e~g~ 148 (265)
T TIGR00559 71 APTEEMIEIAVEIKNKP-EKVTLVPEKRDEVTTEGGLDVARLKDKLKELVKRLHEAGIEVSLFI-DADKDQISAAAEVGA 148 (265)
T ss_pred CCHHHHHHHHHHHCCCC-CEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHCCC
T ss_conf 85189999999855899-7387416988603026440001104679999999986798587742-544688899997089
Q ss_pred CEEEEECCCCHHHHHC-------------CCCCCCHHH-----------HHHHHHHHHHCCCCCCCEEEECCCCCHH---
Q ss_conf 0697513437777320-------------588889899-----------9999999998798557707866898999---
Q gi|254780485|r 160 DYYNHNIDTSERFYPH-------------VTTTHTFED-----------RLQTLENVRKSGIKVCCGGILGLGEMID--- 212 (328)
Q Consensus 160 ~~~~~~let~~~~~~~-------------~~~~~~~~~-----------~l~~~~~a~~~G~~~~sg~l~G~gEt~e--- 212 (328)
+.+.+.=+.+..+|.+ +...+|+++ ..+.-..|+.+|+++ --|||=|+.
T Consensus 149 ~~iE~hTg~YA~~~~~~~~nannqihaisvlkdksP~e~~~el~~aflq~~~as~~A~~~GL~v----~AGHgL~y~Nvk 224 (265)
T TIGR00559 149 DRIEIHTGVYANLYNKLYSNANNQIHAISVLKDKSPKELKEELQRAFLQIKKASVYAKSLGLKV----NAGHGLNYHNVK 224 (265)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE----EECCCCCHHHHH
T ss_conf 8488502246898887741001321223111158868999999899999999999998749868----614888778999
Q ss_pred HHHHHHH-HHHHCCCCCCEE
Q ss_conf 9999999-997408888602
Q gi|254780485|r 213 DRIDMLL-TLANLSTPPESI 231 (328)
Q Consensus 213 eri~~l~-~lr~l~~~~~~v 231 (328)
+.++-+. .|++|.. .|++
T Consensus 225 ~~~~~l~GYl~ElnI-GHa~ 243 (265)
T TIGR00559 225 EFAKILEGYLDELNI-GHAI 243 (265)
T ss_pred HHHHCCCCHHHHHHH-HHHH
T ss_conf 998617401102411-3899
No 161
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=90.08 E-value=1.5 Score=23.33 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-------CC-CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 85799999999996498389973-------03-68887442899999887621368832410256999999987415760
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMG-------AA-WREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~-------~~-~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
..||++..+... .-..+|+| ++ +.-+.....+++.+.++.++..++.++.-+ ..+.+++..-++.|++
T Consensus 72 ~teEml~ia~~~---kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFi-D~d~~qi~aa~~~gA~ 147 (243)
T COG0854 72 PTEEMLAIALKT---KPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFI-DPDPEQIEAAAEVGAP 147 (243)
T ss_pred CHHHHHHHHHHC---CCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHHCCC
T ss_conf 448999999855---987478578964641455563355002469999999985797699972-7998999999984998
Q ss_pred EEEEECCCCHHHHHCCCCCCCHH------HHH-HHHHHHHHCCCCCCCEEEECCCCCH
Q ss_conf 69751343777732058888989------999-9999999879855770786689899
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFE------DRL-QTLENVRKSGIKVCCGGILGLGEMI 211 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~------~~l-~~~~~a~~~G~~~~sg~l~G~gEt~ 211 (328)
.+.+.- ..|...+.....+ +++ .+.+.|+++|+.+++ |||=|.
T Consensus 148 ~IELhT----G~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~VnA----GHgLty 197 (243)
T COG0854 148 RIELHT----GPYADAHDAAEQARADAELERLAKAAKLAAELGLKVNA----GHGLTY 197 (243)
T ss_pred EEEEEC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCC
T ss_conf 799843----66566478677887999999999999999973945745----888650
No 162
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.99 E-value=1.5 Score=23.28 Aligned_cols=182 Identities=12% Similarity=0.139 Sum_probs=112.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
.+..+.|+.+..++.+.+.|++-+-+... .+. -.+.|+.+++..+.+.+-+|. ++.++++...++|++.+.
T Consensus 19 lr~~~~~~a~~~~~al~~gGi~~iEiTl~--t~~------a~~~I~~l~~~~p~~~iGaGTV~~~e~~~~a~~aGA~FiV 90 (210)
T PRK07455 19 IRAPDLELGLQMAEAVAAGGMRLIEITWN--SDQ------PAELISQLREKLPECIIGTGTLLTLEDLEEAIAAGAQFCF 90 (210)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECC--CCC------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 97599999999999999879988999689--988------9999999998789968988818789999999986999998
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+|. .+ .++++.+++.|++.-.|.+ |+-|...-+ +++. ..+- ++|.. .
T Consensus 91 -----SP~--------~~----~~vi~~a~~~~i~~iPGv~-----TpsEi~~A~----~~G~--~~vK---lFPA~--~ 137 (210)
T PRK07455 91 -----TPH--------VD----LELIQAAVAADIPIIPGAL-----TPTEIVTAW----QAGA--SCVK---VFPVQ--A 137 (210)
T ss_pred -----CCC--------CC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECCCH--H
T ss_conf -----688--------88----9999999982997658869-----999999999----8699--8477---50513--2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCC---CCCHHHHHHHHHH
Q ss_conf 244568798999999999999686872142311565165689999980998899778665158---8898999999998
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAK---NPSYNKDTILFNR 319 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~---g~~~~~~~~~i~~ 319 (328)
...-.|+|- .|=-+|+..+.-++| +..+....-|.+|+...-.|..+.... ....+++.+..++
T Consensus 138 ------~GG~~ylka---l~~p~p~i~~~ptGG---V~~~n~~~yl~ag~~~vg~Gs~l~~~~~i~~~d~~~I~~~A~~ 204 (210)
T PRK07455 138 ------VGGADYIKS---LQGPLGHIPLIPTGG---VTLENAQAFIQAGAIAVGLSSQLFPKTLLAAQNWPAITQRAEL 204 (210)
T ss_pred ------CCCHHHHHH---HHCCCCCCCEEECCC---CCHHHHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf ------067999999---865489993887899---8988899999689979998846189888861899999999999
No 163
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=89.95 E-value=1.5 Score=23.26 Aligned_cols=165 Identities=14% Similarity=0.115 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC---CCCEEEECCC---CCHHHHHHHHCCCCCEE
Q ss_conf 85799999999996498389973036888744289999988762136---8832410256---99999998741576069
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL---GLETCMTLGM---LSFEQAQILSKAGLDYY 162 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~---~~~i~~~~g~---~~~~~~~~Lk~aG~~~~ 162 (328)
+.|.-++.|+++.+.|+..+||--...-.. .....++++.+|+. ++.|+++... +....|.+-.+||+|.+
T Consensus 153 t~~yy~~~ak~l~~~G~d~i~IKDmAGll~---P~~a~~LV~~lk~~~g~d~pI~~HtH~T~G~~~~~~l~AieAGvDiv 229 (499)
T PRK12330 153 TTEGFVEQAKRLLDMGCDSICIKDMAALLK---PQPAYDLVKGIKEACGPDTRVHVHAHATTGVTLVSLMKAIEAGVDVV 229 (499)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCC---HHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 899999999999975999899847534678---89999999999986389983798517887469999999998499887
Q ss_pred EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC----CCEE-ECCCEE
Q ss_conf 75134377773205888898999999999998798557707866898999999999999740888----8602-054112
Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP----PESI-PINLLI 237 (328)
Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~----~~~v-~~~~~~ 237 (328)
-..+... .. .+.+..- .-+...++..|+.++-- .+-.++..+++..+|..... ..++ +-....
T Consensus 230 D~A~~~~----s~-gtsqp~~--~s~va~L~~t~~d~~ld-----~~~l~~i~~y~~~vr~~Y~~fe~~~~~~d~~v~~~ 297 (499)
T PRK12330 230 DTAISSM----SL-GPGHNPT--ESLVEMLEGTGYTTKLD-----MDRLLKIKDHFAKVRPRYKEFLSKITGVETEIFKS 297 (499)
T ss_pred CCCCCCC----CC-CCCCCCH--HHHHHHHHCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
T ss_conf 2445432----37-9889979--99999985789889979-----99999999999999999975046676788635038
Q ss_pred ECCCCCCCC-------CCCCC-HHHHHHHHHHHHHHCCC
Q ss_conf 048741244-------56879-89999999999996868
Q gi|254780485|r 238 PIPGSKFEE-------NKKVD-PIEHVRIISVARILMPK 268 (328)
Q Consensus 238 p~~gt~l~~-------~~~~~-~~e~lr~iAi~RL~lP~ 268 (328)
+.||.-+.+ ..... -+|.++-++--|-.|-+
T Consensus 298 q~PGGm~sNl~~Ql~~~g~~dr~~eVl~e~~~Vr~~lG~ 336 (499)
T PRK12330 298 QIPGGMLSNMESQLKQQGAGDRMKEVLEEVPRVRKDAGY 336 (499)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 895668999999999778476799999999999996699
No 164
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.91 E-value=1.6 Score=23.24 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--......+ ..-.+.++.+ ++.++.+++.-|..+.++.+++-++|++.+.++=-.
T Consensus 31 dP~~~a~~~~~~gadel~ivDld~s~~~~--~~~~~~I~~i~~~~~~pi~vGGGIrs~e~~~~ll~~GadkVvigs~a~~ 108 (253)
T PRK02083 31 DPVELAKRYDEEGADELVFLDITASSEGR--DTMKDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 99999999998799989999562664577--4179999999986398778517621389876898779878999984653
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCE------------EEECC---CCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 777732058888989999999999987985-5770------------78668---9899999999999974088886020
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCG------------GILGL---GEMIDDRIDMLLTLANLSTPPESIP 232 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg------------~l~G~---gEt~eeri~~l~~lr~l~~~~~~v~ 232 (328)
.|.+.. +.++..|=+ +... .++=+ -.|..+..+++..+.+++. ..+-
T Consensus 109 ~p~~i~---------------~~~~~~G~q~Iv~siD~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~--geil 171 (253)
T PRK02083 109 DPELIT---------------ELADRFGSQCIVVAIDAKRDGEPGRWEVFTHGGRKPTGIDAVEWAKEVQELGA--GEIL 171 (253)
T ss_pred CCCHHH---------------HHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCC--CEEE
T ss_conf 853557---------------88974698359999998873768718999807841255239999999875698--7899
Q ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHH
Q ss_conf 54112048741244568798999999999999686872142311565165689999980998899778665158889899
Q gi|254780485|r 233 INLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNK 312 (328)
Q Consensus 233 ~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~ 312 (328)
+ .-+-..|| +.+ + ..+.++-++ . .. +..+.+++|-- -..++.+..-..|++++.+|.-+ --+..++.+
T Consensus 172 ~-tdI~rDG~-~~G---~-d~~l~~~i~--~-~~-~iPiI~sGGv~-s~~di~~~l~~~~i~gv~~G~~~-~~~~~sl~~ 239 (253)
T PRK02083 172 L-TSMDQDGT-KNG---Y-DLELTRAVR--D-AV-SVPVIASGGAG-NLEHFAEAFTEGGADAALAASVF-HFGEITIGE 239 (253)
T ss_pred E-EEECCCCC-CCC---C-CHHHHHHHH--H-HC-CCCEEEECCCC-CHHHHHHHHHHCCCEEEEEHHHH-HCCCCCHHH
T ss_conf 9-98855586-678---8-999999999--7-57-99999988999-99999999986798099871277-769999999
Q ss_pred HHHHHHHCCCCC
Q ss_conf 999999829853
Q gi|254780485|r 313 DTILFNRLGLIP 324 (328)
Q Consensus 313 ~~~~i~~~G~~P 324 (328)
..+.+.+.|+.-
T Consensus 240 ~k~~L~~~~i~v 251 (253)
T PRK02083 240 LKAYLAEQGIEV 251 (253)
T ss_pred HHHHHHHCCCCC
T ss_conf 999999878961
No 165
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=89.64 E-value=1.6 Score=23.10 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=75.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEE
Q ss_conf 10006857999999999964983899730368887442899999887621368832410256-99999998741576069
Q gi|254780485|r 84 ASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYY 162 (328)
Q Consensus 84 ~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~ 162 (328)
.-+..+.|+.+..++...+.|++-+-+.. +.|. -.+.|+.+++..+++.+-+|+ ++.+++....++|.+-+
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~IEITl--~sp~------a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fi 89 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAIEITL--RTPA------ALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFI 89 (211)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEEEC--CCCC------HHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCCEE
T ss_conf 99708999999999999976987699964--7987------899999999867465882455669999999998599789
Q ss_pred EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 75134377773205888898999999999998798557707866898999999999
Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDML 218 (328)
Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l 218 (328)
- +|. .+ -++++.+++.|+++.-|.+ |.-|...-+
T Consensus 90 V-----sP~--------~~----~ev~~~a~~~~ip~~PG~~-----TptEi~~Al 123 (211)
T COG0800 90 V-----SPG--------LN----PEVAKAANRYGIPYIPGVA-----TPTEIMAAL 123 (211)
T ss_pred E-----CCC--------CC----HHHHHHHHHCCCCCCCCCC-----CHHHHHHHH
T ss_conf 8-----999--------99----9999999867996368879-----989999999
No 166
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=88.89 E-value=1.8 Score=22.75 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 79999999999649838997303688874428999998876213688324102569999999874157606975134377
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSE 170 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~ 170 (328)
-...+.|+...+.|+.-+.+.+- ...+...++++..+-+. ..+.+...-+..++.+...-+.+|+|.+.+-...
T Consensus 31 ~d~~~~A~~Y~~~GA~aiSVLTe-~~~F~Gs~~~L~~v~~~---~~~PiLrKDFIid~~QI~ea~~~GAdaiLLI~~~-- 104 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTE-PKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA-- 104 (217)
T ss_pred CCHHHHHHHHHHCCCCEEEEECC-CCCCCCCHHHHHHHHHH---CCCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHH--
T ss_conf 99999999999779818999557-77779889999999984---7998674232176999999998199878798885--
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC
Q ss_conf 77320588889899999999999879855770786689899999999999974088886020541120487412445687
Q gi|254780485|r 171 RFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV 250 (328)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~ 250 (328)
-+.++--+.++.|+++|+.+ ++-. .+.+| +.+..+++. ..+.+|... +.. -..
T Consensus 105 ---------L~~~~l~~l~~~a~~lgl~~----LvEv-h~~~E----l~~a~~~~a--~iIGINnRd------L~t-~~v 157 (217)
T cd00331 105 ---------LDDEQLKELYELARELGMEV----LVEV-HDEEE----LERALALGA--KIIGINNRD------LKT-FEV 157 (217)
T ss_pred ---------CCHHHHHHHHHHHHHHCCEE----EEEE-CCHHH----HHHHHHCCC--CEEEECCCC------CHH-CEE
T ss_conf ---------49999999999999949827----9885-89999----999995799--878421677------123-034
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC
Q ss_conf 989999999999996868721423115651656899999809988997786651588
Q gi|254780485|r 251 DPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN 307 (328)
Q Consensus 251 ~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g 307 (328)
+. -++..++.. +|.-.+.|+-|=.+-..+. ......|+|+.++|+.++++..
T Consensus 158 d~---~~~~~L~~~-ip~~~~~IsESGI~~~~di-~~l~~~G~d~~LIG~sLm~~~~ 209 (217)
T cd00331 158 DL---NTTERLAPL-IPKDVILVSESGISTPEDV-KRLAEAGADAVLIGESLMRAPD 209 (217)
T ss_pred CH---HHHHHHHHH-CCCCCEEEECCCCCCHHHH-HHHHHCCCCEEEECHHHHCCCC
T ss_conf 78---999999964-8989889982799999999-9999879999998978867999
No 167
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=88.86 E-value=1.9 Score=22.74 Aligned_cols=178 Identities=17% Similarity=0.124 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 99999999996498389973036888744289999988762136883241025699999998741576069751343777
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSER 171 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~ 171 (328)
...+.|+...+.|+.-+.+.+- ...+....+++.. +|.. ..+.+...-+..++.+...-+.+|+|.+.+-...
T Consensus 69 dp~~iA~~Y~~~GA~aiSVLTd-~~~F~Gs~~~L~~-vr~~--v~lPiLrKDFIid~yQI~ear~~GADaiLLI~~~--- 141 (254)
T pfam00218 69 DPAEIARAYEAAGASAISVLTE-PKYFQGSLEYLRE-VREA--VSLPVLRKDFIIDEYQIYEARAYGADTVLLIVAV--- 141 (254)
T ss_pred CHHHHHHHHHHCCCCEEEEECC-CCCCCCCHHHHHH-HHHH--CCCCEECCHHEEEHHHHHHHHHCCCCEEEHHHHC---
T ss_conf 9999999999779837998426-7867987999999-9986--4885111410465999999998088863144711---
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCC
Q ss_conf 73205888898999999999998798557707866898999999999999740888860205411204874124456879
Q gi|254780485|r 172 FYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVD 251 (328)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~ 251 (328)
-+.++--+.++.|+++|+.+ ++-. .+.+| +.+.-+++. .-+.+|... |.. -..+
T Consensus 142 --------L~~~~l~~l~~~a~~lgl~~----LvEv-h~~~E----l~~al~~~a--~iIGINNRn------L~t-f~vd 195 (254)
T pfam00218 142 --------LSDELLEELYEYARSLGMEP----LVEV-HNEEE----LERALALGA--KLIGVNNRN------LKT-FEVD 195 (254)
T ss_pred --------CCHHHHHHHHHHHHHHCCEE----EEEE-CCHHH----HHHHHHCCC--CEEEECCCC------HHH-HHCC
T ss_conf --------99999999999999848867----9886-89999----999984899--789632788------465-1005
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC
Q ss_conf 89999999999996868721423115651656899999809988997786651588
Q gi|254780485|r 252 PIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN 307 (328)
Q Consensus 252 ~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g 307 (328)
.. ++..++. .+|...+.++-|=..-. +-......+|+|++++|+.+.++..
T Consensus 196 ~~---~t~~L~~-~ip~~~~~VsESGI~~~-~di~~l~~~G~~~~LIGe~lm~~~d 246 (254)
T pfam00218 196 LN---TTRRLAP-MVPEDVLLVAESGISTP-EDVEKLAKHGANAFLVGESLMRAPD 246 (254)
T ss_pred HH---HHHHHHH-HCCCCCEEEECCCCCCH-HHHHHHHHCCCCEEEECHHHHCCCC
T ss_conf 79---9999995-58989879983899999-9999999879999998968757999
No 168
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=88.80 E-value=1.9 Score=22.71 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEE-CCCCCHHHHHHHHCCCCCEEEE
Q ss_conf 0685799999999996498389973036888744289999988762136-8832410-2569999999874157606975
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL-GLETCMT-LGMLSFEQAQILSKAGLDYYNH 164 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~-~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~ 164 (328)
-||+|+=++.|+.+.+.|..-+ -.|-+- .+ +-=.+++|.|-+. ++..-+. +-=..+...-.--++|+|+++.
T Consensus 18 sLT~EqK~~IA~KLDeLGVDvI---EAGfpi-~S--~GE~~aiK~I~~~vGLnAEI~~l~RA~k~DID~AidcgvdsIh~ 91 (371)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVI---EAGFPI-AS--EGEFEAIKKIAEEVGLNAEICSLARALKKDIDKAIDCGVDSIHT 91 (371)
T ss_pred CCCHHHHHHHHHHHHHCCCCEE---ECCCCC-CC--HHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCEEEE
T ss_conf 6886568999999974698288---547631-45--14578999999862896355101026731001564369877899
Q ss_pred ECCCCHHHHHCCCCCCCHHHH----HHHHHHHHHCCCCC
Q ss_conf 134377773205888898999----99999999879855
Q gi|254780485|r 165 NIDTSERFYPHVTTTHTFEDR----LQTLENVRKSGIKV 199 (328)
Q Consensus 165 ~let~~~~~~~~~~~~~~~~~----l~~~~~a~~~G~~~ 199 (328)
..=|||-..+..-+..|-++- ++.++.|++.|+-+
T Consensus 92 fiaTSpiH~KYKl~~K~~devle~~veAvEYAKEHGLiV 130 (371)
T TIGR02090 92 FIATSPIHLKYKLKNKSRDEVLEKAVEAVEYAKEHGLIV 130 (371)
T ss_pred EECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 804885787234888789999999999898775257355
No 169
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=88.43 E-value=2 Score=22.55 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=78.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEECCC-CCHHHHHHHHCCCCCE
Q ss_conf 100068579999999999649838997303688874428999998876213688-32410256-9999999874157606
Q gi|254780485|r 84 ASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL-ETCMTLGM-LSFEQAQILSKAGLDY 161 (328)
Q Consensus 84 ~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~-~i~~~~g~-~~~~~~~~Lk~aG~~~ 161 (328)
.-..-+.|+.+..|+.+.+.|.+-+-+ ..+.+ .=.|+|+.+++..+ ++.+-+|+ ++.+++..-.++|++-
T Consensus 13 Vi~~~~~~~A~~lA~aL~egG~~~~Ev--TlRT~------~A~~aI~~l~~~~P~~~~iGAGTVL~~~Q~~~A~~AGA~F 84 (205)
T TIGR01182 13 VIRIDDVEDALPLAKALIEGGLRVLEV--TLRTP------VALEAIRALRKEVPKDALIGAGTVLNPEQLRQAVAAGAQF 84 (205)
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEE--EECCC------CHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCCCE
T ss_conf 887267877789999998679808988--51472------1689999999728233487167648989999999708957
Q ss_pred EEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 9751343777732058888989999999999987985577078668989999999999
Q gi|254780485|r 162 YNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLL 219 (328)
Q Consensus 162 ~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~ 219 (328)
+. +|. .+ -+..+.+++.|++.--|++ |.-|+..-|.
T Consensus 85 ~v-----SPG--------~~----p~l~~~~~~~~~P~iPGV~-----tpsEi~~Al~ 120 (205)
T TIGR01182 85 IV-----SPG--------LT----PELAKHAKDKGIPIIPGVA-----TPSEIMLALE 120 (205)
T ss_pred EE-----CCC--------CC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHHH
T ss_conf 87-----697--------88----8999998508881217776-----8789999987
No 170
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=88.36 E-value=2 Score=22.52 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 799999999996498389973036888744289999988762136883241025-6999999987415760697513437
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNIDTS 169 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~let~ 169 (328)
++..+.+..+.+.|+.-+++.+.+. .-.+.++.++.+|+..+.+.+-+| ..+.+....|.++|+|.+.+.+..-
T Consensus 152 ~d~~era~~Lv~AGvD~lvID~AhG-----hs~~~~e~ik~ik~~~p~v~VIaGNVaT~~~a~~Li~aGAD~VkVGiGpG 226 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHG-----HSTRIIELVKTIKNKYPNLDLIAGNIVTKEAALDLINVGADCLKVGIGPG 226 (404)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCEEEECCCCC
T ss_conf 5289999999976999999968875-----21789999999997679961663030579999999981989999565478
Q ss_pred HHHHHCCCCCC--------CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 77732058888--------98999999999998798557707866898999999999
Q gi|254780485|r 170 ERFYPHVTTTH--------TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDML 218 (328)
Q Consensus 170 ~~~~~~~~~~~--------~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l 218 (328)
.+|++. ...-..++.+.+++.+.++-+- |=..+.-|++.-|
T Consensus 227 -----siCTTr~v~GvGvPq~tAi~d~~~~a~~~~v~IIAD---GGI~~sGDi~KAl 275 (404)
T PRK06843 227 -----SICTTRIVAGVGVPQITAICDVYEVCKNTNICIIAD---GGIRFSGDVVKAI 275 (404)
T ss_pred -----CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEC---CCCCCCCHHHHHH
T ss_conf -----772566545868748999999999960579978836---8746532799999
No 171
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=88.05 E-value=2.1 Score=22.39 Aligned_cols=123 Identities=14% Similarity=0.106 Sum_probs=50.6
Q ss_pred CCHHHHHHHH----HHHHHCCCEEEEEEC-CCCCCCCCCHHHHHHHHHHHCCCCC---CEEEECCCCCHHHHHHHHCCCC
Q ss_conf 6857999999----999964983899730-3688874428999998876213688---3241025699999998741576
Q gi|254780485|r 88 INVDQVLKEA----KNAKENGATRYCMGA-AWREPKERDLSIIVDMIKGVKSLGL---ETCMTLGMLSFEQAQILSKAGL 159 (328)
Q Consensus 88 ~~~Eei~~~a----~~~~~~G~~~~~l~~-~~~~~~~~~~~~~~e~i~~i~~~~~---~i~~~~g~~~~~~~~~Lk~aG~ 159 (328)
++.|++++.+ +.+++.|.. +.... ...+....+.+|++++++...+.+. .++=++|.....++..+-..=.
T Consensus 119 ~t~~e~l~~i~~~v~~a~~~g~~-V~~~~E~f~Da~R~d~efl~ev~~aa~~aGa~~i~l~DTvG~~~P~~v~~~i~~l~ 197 (530)
T PRK12344 119 TTLEENLAMIRDSVAYLKAHGRE-VIYDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAAIVAEVR 197 (530)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCE-EEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999971987-99413213664337999999999999852996002378865558899999999999
Q ss_pred CEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCC-----CHHHHHHHH
Q ss_conf 06975134377773205888898999999999998798557707866898-----999999999
Q gi|254780485|r 160 DYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGE-----MIDDRIDML 218 (328)
Q Consensus 160 ~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gE-----t~eeri~~l 218 (328)
.. +...+ -.+|.+.+..==...-..|-.+|-.---+-++|+|| ..++.+-.|
T Consensus 198 ~~----~~~~~---isvH~HND~GlAvANal~Av~aGA~~ve~TvnGiGERaGNa~Leevv~~L 254 (530)
T PRK12344 198 AR----LPGAP---LGIHAHNDSGLAVANSLAAVRAGARQVQGTINGYGERCGNANLCSIIPNL 254 (530)
T ss_pred HH----CCCCE---EEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 74----89982---79984599688999999999838060431360325555777899999999
No 172
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=87.95 E-value=2.1 Score=22.35 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=35.2
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHH
Q ss_conf 3777732058888989999999999987985577078668-9899999999999974
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLAN 223 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~ 223 (328)
++|.-|+.++=+..--+|.+..+..|++++.. .+++-+ -|+.||-+.++...|+
T Consensus 220 ~~~GqFrdvpfGeG~Vdf~~~f~~lk~~ny~g--pfLIEMWse~~ee~~~~i~~A~~ 274 (287)
T COG3623 220 TSPGQFRDVPFGEGCVDFEECFKTLKQLNYRG--PFLIEMWSETAEEPVAEIIQARD 274 (287)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 58875015786776034999999999828887--66223222022536999999999
No 173
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=87.91 E-value=2.1 Score=22.34 Aligned_cols=166 Identities=14% Similarity=0.112 Sum_probs=104.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
.+..+.|+....++.+.+.|++.+-+.. +.+ .-.+.++.+++..+.+.+-+|. ++.++++...++|++.+.
T Consensus 14 ~r~~~~~~a~~~~~al~~~Gi~~iEiTl--~t~------~a~~~I~~l~~~~p~~~iGaGTV~~~e~~~~a~~aGA~Fiv 85 (196)
T pfam01081 14 IVIKDKEDALPLAEALAAGGIRVLEVTL--RTP------CALDAIRLLRKNRPDALVGAGTVLNAQQLAEAAEAGAQFVV 85 (196)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEC--CCH------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 9779999999999999987998899947--982------79999999996499967999837689999999974999999
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+|. . -.++++.+++.|++.-.|.+ |+-|...- .+.+. ..+-+ +| ...
T Consensus 86 -----SP~--------~----~~~v~~~a~~~~i~~iPGv~-----TpsEi~~A----~~~G~--~~vKl---FP--A~~ 132 (196)
T pfam01081 86 -----SPG--------L----TADLLKHAVDVKIPLIPGVS-----TPSEIMLG----LDLGL--TRFKF---FP--AEA 132 (196)
T ss_pred -----CCC--------C----HHHHHHHHHHCCCCEECCCC-----CHHHHHHH----HHCCC--CEEEE---CC--CHH
T ss_conf -----787--------6----39999999973996637859-----99999999----98799--98997---87--310
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
..+..++|. .|=-+|+....-++| +..+....-|.+|+.....|..+.
T Consensus 133 ------~Gg~~~lka---l~~p~p~~~f~ptGG---v~~~N~~~yl~~g~v~~~~GS~l~ 180 (196)
T pfam01081 133 ------SGGVPAIKA---LAGPFPQVRFCPTGG---IHPANVRDYLALPNILCVGGSWLV 180 (196)
T ss_pred ------CCCHHHHHH---HHCCCCCCEEEEECC---CCHHHHHHHHHCCCEEEEECHHHC
T ss_conf ------184999999---857799986998079---898889999968986999893648
No 174
>TIGR01496 DHPS dihydropteroate synthase; InterPro: IPR006390 This domain is present in sequences representing dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. Dihydropteroate synthase (2.5.1.15 from EC) (DHPS) catalyses the condensation of 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate to para-aminobenzoic acid to form 7,8-dihydropteroate. This is the second step in the three-step pathway leading from 6-hydroxymethyl-7,8-dihydropterin to 7,8-dihydrofolate. DHPS is the target of sulphonamides, which are substrate analogues that compete with para-aminobenzoic acid. Bacterial DHPS (gene sul or folP) is a protein of about 275 to 315 amino acid residues that is either chromosomally encoded or found on various antibiotic resistance plasmids. In the lower eukaryote Pneumocystis carinii, DHPS is the C-terminal domain of a multifunctional folate synthesis enzyme (gene fas) .; GO: 0004156 dihydropteroate synthase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=87.79 E-value=2.2 Score=22.29 Aligned_cols=141 Identities=21% Similarity=0.323 Sum_probs=93.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CCCC-----CCCCHHHHHHHHHHHCCCC--CC--EEEECCCCCHHHHH
Q ss_conf 4100068579999999999649838997303-6888-----7442899999887621368--83--24102569999999
Q gi|254780485|r 83 KASKLINVDQVLKEAKNAKENGATRYCMGAA-WREP-----KERDLSIIVDMIKGVKSLG--LE--TCMTLGMLSFEQAQ 152 (328)
Q Consensus 83 ~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~-~~~~-----~~~~~~~~~e~i~~i~~~~--~~--i~~~~g~~~~~~~~ 152 (328)
+....++.+..++.|++..+.|+.-+-+++- .++. +..+.+++++.|+.|++.. .. +-+|+-+.--+..+
T Consensus 15 DgG~~~~~~~A~~~a~~m~~~GA~IiDiGGeSTRPG~~~vs~~eE~~Rv~Pv~~~~~~~~~~~dQC~~iSvDT~~a~Va~ 94 (268)
T TIGR01496 15 DGGRFLSVDKALEHAERMLEEGADIIDIGGESTRPGADRVSPEEELNRVVPVIKALREQYLFSDQCVPISVDTYRAEVAR 94 (268)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHH
T ss_conf 88766677899999999997399889657705797698789799999889999999974489998414776188289999
Q ss_pred HHHCC-CCCEEEE--ECCCCHHHHHC-------C---C----CCC-----CHH-------HHH-HHHHHHHHCCCCCCCE
Q ss_conf 87415-7606975--13437777320-------5---8----888-----989-------999-9999999879855770
Q gi|254780485|r 153 ILSKA-GLDYYNH--NIDTSERFYPH-------V---T----TTH-----TFE-------DRL-QTLENVRKSGIKVCCG 202 (328)
Q Consensus 153 ~Lk~a-G~~~~~~--~let~~~~~~~-------~---~----~~~-----~~~-------~~l-~~~~~a~~~G~~~~sg 202 (328)
.--++ |++.+|= .+.-.|..++- + | |.. .|+ .++ +-++.+.++|+. .=
T Consensus 95 ~Al~~~Ga~iiNDv~G~~~dp~m~~vaae~~~~~vlMH~~g~P~~~q~~~~Y~dv~~e~~~fl~~~~~~~~~~Gv~-~~- 172 (268)
T TIGR01496 95 AALEAFGADIINDVSGGQFDPDMLEVAAEYGVPLVLMHMRGTPETMQENPRYEDVVEEVLRFLEARAEELLAAGVA-ER- 172 (268)
T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CC-
T ss_conf 9998679867860411466835899999848988987687638876667776566899999999999999975886-65-
Q ss_pred EE----ECCCC--CHHHHHHHHHHHHHCC
Q ss_conf 78----66898--9999999999997408
Q gi|254780485|r 203 GI----LGLGE--MIDDRIDMLLTLANLS 225 (328)
Q Consensus 203 ~l----~G~gE--t~eeri~~l~~lr~l~ 225 (328)
++ ||.+- |.+|=++.|.++.++.
T Consensus 173 I~LDPG~GF~K~~t~~~Nl~ll~~l~~f~ 201 (268)
T TIGR01496 173 IILDPGIGFGKSDTVEHNLELLKRLEEFK 201 (268)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 78717757788888767899998689999
No 175
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=87.76 E-value=2.2 Score=22.28 Aligned_cols=178 Identities=13% Similarity=0.082 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 99999999996498389973036888744289999988762136883241025699999998741576069751343777
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSER 171 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~ 171 (328)
+..+.|+...+.|+.-+...+- ...+....+++.. +|.. ..+.+...-+..++.++.+-+..|+|.+++-..
T Consensus 71 dp~~iA~~Ye~~GA~aISVLTe-~~~F~Gsl~dL~~-vr~~--v~lPvLRKDFIvD~yQI~EAr~~GADaILLIva---- 142 (695)
T PRK13802 71 DPAALAREYEKGGASAISVLTE-GRKFLGSLDDFDK-VRAA--VHIPVLRKDFIVTDYQIFEARAHGADLVLLIVA---- 142 (695)
T ss_pred CHHHHHHHHHHCCCEEEEEECC-CCCCCCCHHHHHH-HHHH--CCCCEEECCEECCHHHHHHHHHCCCCHHHHHHH----
T ss_conf 9999999999879849998258-6767989999999-9985--899857023306399999999828788999998----
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCC
Q ss_conf 73205888898999999999998798557707866898999999999999740888860205411204874124456879
Q gi|254780485|r 172 FYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVD 251 (328)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~ 251 (328)
--+.++--+.++.++++||.. |+-. .+.+|. .+.-+.+. .-|.+|... | -+
T Consensus 143 -------~L~~~~L~~l~~~a~~LGm~~----LVEV-H~~~El----~rAl~~ga--~iIGINnRn------L-----~T 193 (695)
T PRK13802 143 -------ALDDAQLKHLLDLAHELNMTV----LVET-HTREEI----ERARKAGA--KVIGINARN------L-----KN 193 (695)
T ss_pred -------HCCHHHHHHHHHHHHHCCCEE----EEEE-CCHHHH----HHHHHCCC--CEEEEECCC------C-----CC
T ss_conf -------669999999999999869917----9997-899999----99984799--989987898------8-----64
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC
Q ss_conf 89999999999996868721423115651656899999809988997786651588
Q gi|254780485|r 252 PIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN 307 (328)
Q Consensus 252 ~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g 307 (328)
.+-.+.+..-..=.+|...+.++-|=..--.+... .-.+|||.+++||.++|++.
T Consensus 194 f~vD~~~~~~Lap~iP~~~v~VAESGI~~~~Dv~~-~a~aGadAvLVGEalvta~d 248 (695)
T PRK13802 194 LKVDVNKYNELAADLPDDVIKVAESGVFGAVEVED-YARAGADAVLVGEGVATADN 248 (695)
T ss_pred CEECHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-HHHCCCCEEEECCHHHCCCC
T ss_conf 22877999999846899857995689999899999-99779999997803415898
No 176
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=87.73 E-value=2.2 Score=22.27 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCHHHHHHHHHHHCCC--CC
Q ss_conf 78683423212433547775641000685799999999996498--389973036888744289999988762136--88
Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGA--TRYCMGAAWREPKERDLSIIVDMIKGVKSL--GL 137 (328)
Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~--~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~--~~ 137 (328)
+..|+.+|+-|- +..... .......+.+.+.+.......... ..+-+ +||++......+.+++.++.+++. +.
T Consensus 23 ~qGC~~~C~GC~-Np~tw~-~~~G~~~~~~~~~~ii~~l~~~~~~~~GvTi-sGGEP~~q~~~~~l~~l~~~~k~~~~~~ 99 (154)
T PRK11121 23 VSGCVHQCPGCY-NKSTWR-LNSGHPFTKAMEDQIIADLNDTRIKRQGLSL-SGGDPLHPQNVPAILKLVKRVKAECPGK 99 (154)
T ss_pred ECCCCCCCCCCC-CHHHCC-CCCCEECHHHHHHHHHHHHHHCCCCCCCEEE-ECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 568877797999-977858-7589776199999999987642355475388-6888265147999999999999758998
Q ss_pred CEEEECCCCCH
Q ss_conf 32410256999
Q gi|254780485|r 138 ETCMTLGMLSF 148 (328)
Q Consensus 138 ~i~~~~g~~~~ 148 (328)
.|.+-.|..-+
T Consensus 100 ~I~~yTGyt~e 110 (154)
T PRK11121 100 DIWLWTGYKLD 110 (154)
T ss_pred CEEEEECCCHH
T ss_conf 49998186389
No 177
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=87.63 E-value=2.2 Score=22.23 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 999999996498389973036888744289999988762136883241025-6999999987415760697513
Q gi|254780485|r 94 LKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 94 ~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
.+.++.+.+.|+--+++-+.+. .-++.+++++.+|+..+.+.+-+| ..+.+..+.|.++|+|.+.+.+
T Consensus 230 ~eRa~~Lv~AGvDvivIDtAhG-----hs~~vi~~ik~ik~~~~~v~viaGNv~T~~~a~~L~~aGaD~vkVGi 298 (486)
T PRK05567 230 EERAEALVKAGVDVLVVDTAHG-----HSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999976998899504452-----15778999999974078773687512019999999972987699656
No 178
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=87.55 E-value=2.2 Score=22.20 Aligned_cols=177 Identities=13% Similarity=0.112 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 99999999996498389973036888744289999988762136883241025699999998741576069751343777
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSER 171 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~ 171 (328)
...+.|+...+.|+.-+.+.+- ...+....+++..+ +. ...+.+...-+..++.+...-+.+|+|.+++-...
T Consensus 62 dp~~iA~~Y~~~GA~aiSVLTe-~~~F~Gs~~~L~~v-~~--~v~lPiLrKDFIid~~QI~ea~~~GADaILLIaa~--- 134 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTD-QSYFGGSLEDLKSV-SS--ELKIPVLRKDFILDEIQIREARAFGASAILLIVRI--- 134 (247)
T ss_pred CHHHHHHHHHHCCCCEEEECCC-CCCCCCCHHHHHHH-HH--HCCCCEEEEEEECCHHHHHHHHHCCCCEEHHHHHC---
T ss_conf 9999999999779928998278-56679989999999-98--57998474112064999999997399851268850---
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCC
Q ss_conf 73205888898999999999998798557707866898999999999999740888860205411204874124456879
Q gi|254780485|r 172 FYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVD 251 (328)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~ 251 (328)
-+.++--+.++.|+++|+.+ ++-. .+.+|. .+.-+++. ..+.+|... +.. -..+
T Consensus 135 --------L~~~~l~~l~~~A~~lGle~----LvEv-H~~~El----~~al~~~~--~iIGINNRn------L~t-f~vd 188 (247)
T PRK13957 135 --------LTPSQIKSFLKHASSLGMDV----LVEV-HTEDEA----KLALDCGA--EIIGINTRD------LDT-FQIH 188 (247)
T ss_pred --------CCHHHHHHHHHHHHHHCCEE----EEEE-CCHHHH----HHHHHCCC--CEEEEECCC------CCC-CCCC
T ss_conf --------89999999999999838815----6255-899999----99984899--889874577------321-4639
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC
Q ss_conf 89999999999996868721423115651656899999809988997786651588
Q gi|254780485|r 252 PIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN 307 (328)
Q Consensus 252 ~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g 307 (328)
.. +..-.+=++|...+.++-|=..-..+.. .+..++|+.++|+.+..+..
T Consensus 189 ~~----~~~~l~~~ip~~~~~VsESGI~~~~di~--~l~~~~da~LIGeslMk~~d 238 (247)
T PRK13957 189 QN----LVEEVAAFLPPNIVKVGESGIESRSDLD--KFRKLVDAALIGTYFMEKKD 238 (247)
T ss_pred HH----HHHHHHHHCCCCCEEEECCCCCCHHHHH--HHHHHCCEEEECHHHHCCCC
T ss_conf 88----9999984389998799678999999999--99973999998867756999
No 179
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=87.16 E-value=2.3 Score=22.05 Aligned_cols=203 Identities=15% Similarity=0.190 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--......+ ..-.++++.+ ++.++.+.+.-|..+.+..+++.++|++.+.++-.+
T Consensus 30 dP~~~A~~~~~~Ga~~lhvvDLd~A~~g~--~~n~~~I~~i~~~~~~pi~vGGGIrs~e~~~~~l~~GadkVvigS~a~~ 107 (241)
T PRK00748 30 DPLAQAQAWQDQGAEWLHLVDLDGAFAGR--PVNLELIEAIVAAVDIPVQLGGGIRDLETVEAYLDAGVARVIIGTAAVK 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 99999999998799989999785420288--2079999999986799999827707499999999769775886471033
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCC
Q ss_conf 7777320588889899999999999879855770786689---8999999999999740888860205411204874124
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLG---EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFE 245 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~ 245 (328)
.|++..++..... + ++- +++.+--+.+.-+| .|.-+..+++..+.+++. ..+-+ .-+-..|| +.
T Consensus 108 n~~~i~~~~~~~g-~-~iv-------vsiD~k~~~v~~~gw~~~t~~~~~~~i~~~~~~G~--~eii~-tdI~~DGt-~~ 174 (241)
T PRK00748 108 NPELVKEACKKFP-G-RIV-------VGLDARDGKVATRGWQEVSGVDLEDLAKRFEDAGV--AAIIY-TDISRDGT-LS 174 (241)
T ss_pred CHHHHHHHHHHCC-C-CEE-------EEEEECCCEEECCCCCCCCCCCHHHHHHHHHHCCC--CEEEE-EEEECCCC-CC
T ss_conf 9689999986235-5-579-------99982166540157554679748999999985587--56999-88705685-47
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHH-H-HHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 4568798999999999999686872142311565165689999-9-809988997786651588898999999998
Q gi|254780485|r 246 ENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALC-F-FSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 246 ~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~-L-~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
.++ .+.++-++ -..+ ..+.+++| .+-..+..++. + ..|++++++|--+ -.+.-+.+|.++-++.
T Consensus 175 ---G~d-~~l~~~i~---~~~~-ipviasGG-v~s~~Di~~L~~~~~~gv~gviiG~Al-y~g~i~l~eal~~~~~ 240 (241)
T PRK00748 175 ---GPN-VELTRELA---AATP-IPVIASGG-VSSLDDIRALKALGPEGVEGVIVGKAL-YEGKFDLAEALACWQN 240 (241)
T ss_pred ---CCC-HHHHHHHH---HHCC-CCEEEECC-CCCHHHHHHHHHCCCCCCCEEEEEHHH-HCCCCCHHHHHHHHHC
T ss_conf ---689-99999999---8689-98999889-999999999986031792489987898-7799899999998652
No 180
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=87.03 E-value=2.4 Score=22.00 Aligned_cols=187 Identities=14% Similarity=0.192 Sum_probs=102.5
Q ss_pred HCCCEEEEE-ECCCCCCCC-CCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCC
Q ss_conf 649838997-303688874-428999998876213688324102569999999874157606975134377773205888
Q gi|254780485|r 102 ENGATRYCM-GAAWREPKE-RDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTT 179 (328)
Q Consensus 102 ~~G~~~~~l-~~~~~~~~~-~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~ 179 (328)
+.|+..+++ +.-|+--+. ..-..+++.+|........+|+-+-. .+..+..+.++|++.+..-.|+...
T Consensus 23 ~~~~d~iHiDIMDG~FVPN~tfgp~~v~~ir~~t~~p~DvHLMv~~-P~~~i~~~~~~gad~It~H~Ea~~~-------- 93 (227)
T PRK09722 23 DSKADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDCHLMVTR-PQDYIAQLADAGADFITLHPETING-------- 93 (227)
T ss_pred HCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECC-HHHHHHHHHHCCCCEEEECHHHCCC--------
T ss_conf 7489889995616860785451865999997448996478999658-8888999985499899956565056--------
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 89899999999999879855770786689899999999999974088886020541120487412445687989999999
Q gi|254780485|r 180 HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRII 259 (328)
Q Consensus 180 ~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~i 259 (328)
.-.++++..++.|++.+ +-+-. +|.-+.++.+. .++ +.|-++-. .|| +.+.+-. .+.+.-|
T Consensus 94 ----~~~~~i~~Ik~~g~k~G--lAlnP-~Tpi~~i~~~l--~~v----D~VLvMsV--~PG--f~GQ~Fi--~~~l~KI 154 (227)
T PRK09722 94 ----QAFRLIDEIRRAGMKVG--LVLNP-ETPVEAIKYYI--HLA----DKVTVMTV--DPG--FAGQPFI--PEMLDKI 154 (227)
T ss_pred ----CHHHHHHHHHHCCCCEE--EEECC-CCCHHHHHHHH--HHC----CEEEEEEE--CCC--CCCCCCC--HHHHHHH
T ss_conf ----59999999998699722--33389-99866887667--437----98999988--899--9876566--8899999
Q ss_pred HHHHHHCCC----CCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 999996868----721423115651656899999809988997786651588898999999998
Q gi|254780485|r 260 SVARILMPK----SRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 260 Ai~RL~lP~----~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
.-.|-+.+. ..|.+-+ .+..+....+..+|||.++.|..-+=..+-+.++-++.+++
T Consensus 155 ~~lr~~~~~~~~~~~I~VDG---GI~~~~i~~~~~aGAd~~V~GssaiF~~~~~i~~~~~~l~~ 215 (227)
T PRK09722 155 AELKAWREREGLEYEIEVDG---SCNQKTYEKLMAAGADVFIVGTSGLFNHAENIDEAWDIMTA 215 (227)
T ss_pred HHHHHHHHHCCCCCEEEEEC---CCCHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHH
T ss_conf 99999998259982699989---88899999999869999997748974899999999999999
No 181
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=86.97 E-value=0.75 Score=25.37 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 68579999999999649838997
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCM 110 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l 110 (328)
.+.++|.+-+.++.+.|+.-+|+
T Consensus 14 ~T~~~i~~l~~~A~~~~~aaVcV 36 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCV 36 (203)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 99999999999998759839998
No 182
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=86.78 E-value=2.5 Score=21.92 Aligned_cols=138 Identities=20% Similarity=0.289 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCC-CC-----CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 0685799999999996498389973036-88-----87442899999887621368832410256999999987415760
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAW-RE-----PKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~-~~-----~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
..+.+.+++.|+...+.|+.-+-+++.- ++ +...+++++...++.+++. ..+.+|+-+...+.++.--++|++
T Consensus 20 ~~~~~~a~~~a~~~i~~GAdiIDIG~eSTrPg~~~i~~~eE~~Rl~pvl~~i~~~-~~v~iSIDT~~~~Va~~al~~G~~ 98 (258)
T cd00423 20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGE-PDVPISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECCCHHHHHHHHHCCCC
T ss_conf 7899999999999998799999979877899997477788888850056887427-996099979888999999985998
Q ss_pred EEE-E-ECCCCHHHHHC-------C---C----CC-----CC----HH---HHH-HHHHHHHHCCCCCCCEE---EECCC
Q ss_conf 697-5-13437777320-------5---8----88-----89----89---999-99999998798557707---86689
Q gi|254780485|r 161 YYN-H-NIDTSERFYPH-------V---T----TT-----HT----FE---DRL-QTLENVRKSGIKVCCGG---ILGLG 208 (328)
Q Consensus 161 ~~~-~-~let~~~~~~~-------~---~----~~-----~~----~~---~~l-~~~~~a~~~G~~~~sg~---l~G~g 208 (328)
.+| + .....++..+. + | |. .. .+ +|+ +.++.+.+.|++..-=+ -+|.|
T Consensus 99 iINDVsg~~~d~~m~~~va~~~~~~ilmH~~~~p~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~Gi~~~~IiiDPGiGFg 178 (258)
T cd00423 99 IINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFG 178 (258)
T ss_pred EEECCHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCC
T ss_conf 68240031065579999997499889830578865566689866489999999999999999869993008874776778
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 89999999999997408
Q gi|254780485|r 209 EMIDDRIDMLLTLANLS 225 (328)
Q Consensus 209 Et~eeri~~l~~lr~l~ 225 (328)
-+.++-.+.|..+..+.
T Consensus 179 K~~~~n~~ll~~l~~~~ 195 (258)
T cd00423 179 KTEEHNLELLRRLDAFR 195 (258)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 88788999999799997
No 183
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=86.72 E-value=2.5 Score=21.90 Aligned_cols=181 Identities=16% Similarity=0.223 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCH-HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECC
Q ss_conf 579999999999649838997-303688874428-999998876213688324102569999999874157606975134
Q gi|254780485|r 90 VDQVLKEAKNAKENGATRYCM-GAAWREPKERDL-SIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 90 ~Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~-~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328)
.-.+.++.+.+.+.|+..+++ +.-|+--+...+ -..++.+|........+|+-+-. .+..+..+.++|++.+..-.|
T Consensus 11 ~~~l~~~i~~l~~~g~d~iHiDimDG~FVpn~t~g~~~i~~ir~~t~~~~DvHLMv~~-P~~~i~~~~~~g~d~i~~H~E 89 (201)
T pfam00834 11 FAHLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTELPLDVHLMVEE-PDRIIPDFAEAGADIISFHAE 89 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEC-HHHHHHHHHHCCCCEEEECHH
T ss_conf 9999999999997699989982767972775555877999998638996389999837-766399998739988997544
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC
Q ss_conf 37777320588889899999999999879855770786689899999999999974088886020541120487412445
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN 247 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~ 247 (328)
+.+ +..++++..++.|+++ |+-+-.. |.-+.++.+ |..+ +.|-++-. .|| +.+.
T Consensus 90 ~~~-------------~~~~~i~~ik~~g~k~--GlAlnP~-T~~~~l~~~--l~~i----D~VLvMtV--~PG--f~GQ 143 (201)
T pfam00834 90 ASD-------------HPHRTIQLIKEAGAKA--GLVLNPA-TPLDAIEYL--LDDL----DLVLLMSV--NPG--FGGQ 143 (201)
T ss_pred HHH-------------CHHHHHHHHHHCCCEE--EEEECCC-CCCHHHHHH--HHHC----CEEEEEEE--CCC--CCCC
T ss_conf 413-------------7999999998649726--8885699-860288876--7427----98999886--689--8876
Q ss_pred CCCCHHHHHHHHHHHHHHCCC----CCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf 687989999999999996868----7214231156516568999998099889977866
Q gi|254780485|r 248 KKVDPIEHVRIISVARILMPK----SRLRLAAGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP~----~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
+- -...+.-|.-+|-+.|. ..|.+-+ .+..+.......+|||.++.|.++
T Consensus 144 ~f--~~~~l~KI~~lr~~~~~~~~~~~I~vDG---GIn~~ti~~l~~~Gad~~V~GSai 197 (201)
T pfam00834 144 SF--IPSVLPKIRKVRKMIDEGGLDTLIEVDG---GVNLDNIPQIAEAGADVLVAGSAV 197 (201)
T ss_pred CC--CHHHHHHHHHHHHHHHHCCCCEEEEEEC---CCCHHHHHHHHHCCCCEEEECCEE
T ss_conf 45--6779999999999998269980799989---888999999998799999978002
No 184
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=86.65 E-value=2.5 Score=21.87 Aligned_cols=208 Identities=14% Similarity=0.193 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 799999999996498389973036888744289999988762-136883241025699999998741576069751343-
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT- 168 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let- 168 (328)
=..++.|+...+.|+-++++.--.-.... -+-..+.++.. ...++.+++--|..+.+.++++..+|+|-+.+|--.
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~~g--r~~~~~vv~~~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv 107 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASSEG--RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAV 107 (256)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf 89499999997759976999862256566--6207999999973030324754775888999999976997465284675
Q ss_pred -CHHHHHCCCCCC-------CHHHHHHHHHHHHHCCCCCCCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEEECCCEE
Q ss_conf -777732058888-------9899999999999879855770786689---89999999999997408888602054112
Q gi|254780485|r 169 -SERFYPHVTTTH-------TFEDRLQTLENVRKSGIKVCCGGILGLG---EMIDDRIDMLLTLANLSTPPESIPINLLI 237 (328)
Q Consensus 169 -~~~~~~~~~~~~-------~~~~~l~~~~~a~~~G~~~~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v~~~~~~ 237 (328)
.|++-.+.-... +-+-|.+. -| ..+....+=+| .|--+.++-.....+++. ..+-++-.
T Consensus 108 ~~p~lI~~~a~~FGsQciVvaIDakr~~------~g-~~~~~~v~~~gGr~~t~~d~~eWa~~~e~~GA--GEIlLtsm- 177 (256)
T COG0107 108 KDPELITEAADRFGSQCIVVAIDAKRVP------DG-ENGWYEVFTHGGREDTGLDAVEWAKEVEELGA--GEILLTSM- 177 (256)
T ss_pred CCHHHHHHHHHHHCCCEEEEEEEEEECC------CC-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCC--CEEEEEEE-
T ss_conf 0959999999983881299998755426------89-98767999668975688579999999997388--54878635-
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE-E-EEHHHHHCHHHHHHHHHHC-CCEEEECCEEECCCCCCHHHHH
Q ss_conf 04874124456879899999999999968687214-2-3115651656899999809-9889977866515888989999
Q gi|254780485|r 238 PIPGSKFEENKKVDPIEHVRIISVARILMPKSRLR-L-AAGRAMMSDELQALCFFSG-ANSIFVGDTLLTAKNPSYNKDT 314 (328)
Q Consensus 238 p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~-i-~~~~~~~~~~~~~~~L~~G-aN~~~~g~~~~t~~g~~~~~~~ 314 (328)
-..|| ...-+.+.++.++ ..+.|+ | |+|-.++ .++.+ ++..| |+..+... +-.-+..++.+..
T Consensus 178 D~DGt-----k~GyDl~l~~~v~------~~v~iPvIASGGaG~~-ehf~e-af~~~~adAaLAAs-iFH~~~~~i~evK 243 (256)
T COG0107 178 DRDGT-----KAGYDLELTRAVR------EAVNIPVIASGGAGKP-EHFVE-AFTEGKADAALAAS-IFHFGEITIGEVK 243 (256)
T ss_pred CCCCC-----CCCCCHHHHHHHH------HHCCCCEEECCCCCCH-HHHHH-HHHHCCCHHHHHHH-HHHCCCCCHHHHH
T ss_conf 56565-----3675799999999------6488788911898968-89999-99815700887644-3314745499999
Q ss_pred HHHHHCCCCC
Q ss_conf 9999829853
Q gi|254780485|r 315 ILFNRLGLIP 324 (328)
Q Consensus 315 ~~i~~~G~~P 324 (328)
+-+++.|..-
T Consensus 244 ~yl~~~gi~V 253 (256)
T COG0107 244 EYLAEQGIEV 253 (256)
T ss_pred HHHHHCCCCC
T ss_conf 9999859862
No 185
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=85.93 E-value=2.7 Score=21.63 Aligned_cols=188 Identities=18% Similarity=0.133 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 99999999996498389973036888744289999988762136883241025699999998741576069751343777
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSER 171 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~ 171 (328)
...+.|+...+.|+.-+.+.+- ...+...++++.. ++.. ..+.+...-+..++.+...-+.+|+|.+.+-...
T Consensus 71 dp~~~A~~Y~~~GA~aiSVLTe-~~~F~Gs~~~L~~-vr~~--~~lPiLrKDFIid~~QI~ea~~~GADaiLLI~~~--- 143 (261)
T PRK00278 71 DPVEIAKAYEEGGAACLSVLTD-ERFFQGSFEYLRA-ARAA--VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAA--- 143 (261)
T ss_pred CHHHHHHHHHHCCCCEEEEEEC-CCCCCCCHHHHHH-HHHH--CCCCEEEEHEECCHHHHHHHHHCCCCCHHHHHHH---
T ss_conf 9999999999779968999513-0324887999999-9986--6998772010176999999998189857898875---
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCC
Q ss_conf 73205888898999999999998798557707866898999999999999740888860205411204874124456879
Q gi|254780485|r 172 FYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVD 251 (328)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~ 251 (328)
-+.++--+..+.|+++|+.+ ++-. .+.+| +.+..+++. .-+.+|... +.. -..+
T Consensus 144 --------L~~~~l~~l~~~a~~lgl~~----LvEv-h~~~E----l~~a~~~~a--~iIGINnRn------L~t-~~vd 197 (261)
T PRK00278 144 --------LDDEQLKELLDLAHELGLDV----LVEV-HDEEE----LERALKLGA--PLIGINNRN------LKT-FEVD 197 (261)
T ss_pred --------CCHHHHHHHHHHHHHHCCEE----EEEE-CCHHH----HHHHHHCCC--CEEEEECCC------CHH-CEEC
T ss_conf --------58999999999999829907----9776-89999----999984799--889874677------112-0037
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 89999999999996868721423115651656899999809988997786651588898999999998
Q gi|254780485|r 252 PIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 252 ~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
.. ++..++. ++|...+.++-|=.+- ++-......+|+|++++|+.++++.. +.+..+-+..
T Consensus 198 ~~---~~~~L~~-~ip~~~~~VsESGI~~-~~d~~~l~~~G~davLIGeslm~~~d--p~~~l~~L~~ 258 (261)
T PRK00278 198 LD---TTERLAP-LIPKDRLLVSESGIFT-PEDLKRLAKAGADAFLVGESLMRADD--PGAALRELFG 258 (261)
T ss_pred HH---HHHHHHH-HCCCCCEEEECCCCCC-HHHHHHHHHCCCCEEEECHHHHCCCC--HHHHHHHHHH
T ss_conf 89---9999996-4899988997999999-99999999779999998978767999--8999999970
No 186
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=85.57 E-value=2.8 Score=21.51 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
.+..+.++.+..++.+.+.|++-+-+... .+. -.+.++.+++..+.+.+-+|. ++.+++....++|++.+.
T Consensus 10 lr~~~~~~a~~~~~al~~~Gi~~iEitl~--t~~------a~~~i~~l~~~~~~~~iGaGTV~~~~~~~~a~~aGa~Fiv 81 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLR--TPG------ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIV 81 (190)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECC--CCH------HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 97799999999999999869988999678--802------9999999998689808965234779999999985998997
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+|. .+ -++++.+++.|++.-.|.+ |+-|...-+ +.+. ..+- |+|.. .
T Consensus 82 -----sP~--------~~----~~v~~~a~~~~~~~iPGv~-----TpsEi~~A~----~~G~--~~vK---~FPa~--~ 128 (190)
T cd00452 82 -----SPG--------LD----PEVVKAANRAGIPLLPGVA-----TPTEIMQAL----ELGA--DIVK---LFPAE--A 128 (190)
T ss_pred -----CCC--------CC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECCCC--C
T ss_conf -----377--------99----9999999982996657879-----999999999----8799--9899---89551--1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE
Q ss_conf 2445687989999999999996868721423115651656899999809988997786
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT 301 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~ 301 (328)
..+ .++|. .+=.+|+..+. .+|=. ..+....-|.+|+...-.|..
T Consensus 129 ------~G~-~~lka---l~~pfp~~~~~-ptGGI--~~~N~~~yl~~gv~avG~g~~ 173 (190)
T cd00452 129 ------VGP-AYIKA---LKGPFPQVRFM-PTGGV--SLDNAAEWLAAGVVAVGGGSL 173 (190)
T ss_pred ------CCH-HHHHH---HHCCCCCCCEE-EECCC--CHHHHHHHHHCCCEEEEECHH
T ss_conf ------499-99999---85548999389-96799--988899999689989995412
No 187
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=85.52 E-value=2.8 Score=21.50 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEEEECCCC-------CHHHHHHHHCCCCC
Q ss_conf 85799999999996498389973036888-74428999998876213688324102569-------99999987415760
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETCMTLGML-------SFEQAQILSKAGLD 160 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~~~~g~~-------~~~~~~~Lk~aG~~ 160 (328)
..|+.....+.+.+.|++++........+ ....+.++.++++..+..++.+.+-+.+. +...+..+++.|++
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~~ 93 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGVD 93 (360)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 61667999999987380113442666883277899999999999986596899974877775527986778999873113
Q ss_pred EEEEECCCC-----------------------------------------HHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 697513437-----------------------------------------777320588889899999999999879855
Q gi|254780485|r 161 YYNHNIDTS-----------------------------------------ERFYPHVTTTHTFEDRLQTLENVRKSGIKV 199 (328)
Q Consensus 161 ~~~~~let~-----------------------------------------~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~ 199 (328)
.+-+....+ -.+|+.--++-|++..++.-+..|+.|+++
T Consensus 94 glRlD~gfS~eei~~ms~~~lkieLN~S~it~~l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~t 173 (360)
T COG3589 94 GLRLDYGFSGEEIAEMSKNPLKIELNASTITELLDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIKT 173 (360)
T ss_pred HEEECCCCCHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 26523668888999972588089973425189999999735355542001045688666746999999889988559745
Q ss_pred CC
Q ss_conf 77
Q gi|254780485|r 200 CC 201 (328)
Q Consensus 200 ~s 201 (328)
.+
T Consensus 174 ~A 175 (360)
T COG3589 174 AA 175 (360)
T ss_pred EE
T ss_conf 89
No 188
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.50 E-value=2.8 Score=21.49 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=110.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEEE
Q ss_conf 006857999999999964983899730368887442899999887621368832410256-9999999874157606975
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYNH 164 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~~ 164 (328)
+..+.|+.+..++.+.+.|++-+-+.. +.+. ....++.++......+.+.+-+|. ++.++++...++|++.+.
T Consensus 20 r~~~~~~a~~~~~al~~gGi~~iEITl--~tp~---a~~~i~~l~~~~~~~p~~~iGaGTV~~~e~~~~a~~aGA~FiV- 93 (209)
T PRK06552 20 RGESKEEALKISLAVIKGGIKAIEVTY--TNPF---ASEVIKELVERYKDDPEVLIGAGTVLDAVTARQAILAGAQFIV- 93 (209)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEEC--CCCC---HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE-
T ss_conf 728999999999999987998899967--8975---9999999999817799818988727489999999985998897-
Q ss_pred ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCC
Q ss_conf 13437777320588889899999999999879855770786689899999999999974088886020541120487412
Q gi|254780485|r 165 NIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKF 244 (328)
Q Consensus 165 ~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l 244 (328)
+| ..+ .++++.+++.|++.-.|.+ |+-|...-+ +++. ..+- ++| ...
T Consensus 94 ----SP--------~~~----~~v~~~a~~~~i~~iPG~~-----TpsEi~~A~----~~Ga--~~vK---lFP--A~~- 140 (209)
T PRK06552 94 ----SP--------SFN----RETAKICNRYQIPYLPGCM-----TVTEIVTAL----EAGV--DIVK---LFP--GST- 140 (209)
T ss_pred ----CC--------CCC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECC--HHH-
T ss_conf ----69--------998----9999999985996417979-----999999999----8699--9588---583--332-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCC-CCCHHHHHHHHH
Q ss_conf 44568798999999999999686872142311565165689999980998899778665158-889899999999
Q gi|254780485|r 245 EENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAK-NPSYNKDTILFN 318 (328)
Q Consensus 245 ~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~-g~~~~~~~~~i~ 318 (328)
..+ .|+|-+ |=.+|+..+.-++| +..+....-|.+|++..-+|.+++.-. ....+++.+..+
T Consensus 141 -----~G~-~yikal---~~p~p~~~~~ptGG---V~~~N~~~~l~aG~~~vgvGs~l~~~~~~~d~~~I~~~A~ 203 (209)
T PRK06552 141 -----VGP-SFISAI---KGPLPQVNIMVTGG---VSLDNVKDWFAAGADAVGIGGELNKLASQGDYDLITEKAA 203 (209)
T ss_pred -----CCH-HHHHHH---HCCCCCCCEEECCC---CCHHHHHHHHHCCCCEEEECHHHCCCHHCCCHHHHHHHHH
T ss_conf -----489-999998---66489992886389---9988899999879988998657708254189999999999
No 189
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=85.47 E-value=2.9 Score=21.48 Aligned_cols=182 Identities=20% Similarity=0.207 Sum_probs=96.8
Q ss_pred CHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 85799999999996-4983899730368887442899999887621-368832410256999999987415760697513
Q gi|254780485|r 89 NVDQVLKEAKNAKE-NGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 89 ~~Eei~~~a~~~~~-~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
..+...+.|+.-.+ +|++.+|+| -...-... -..-.++|+.|. ....+|.+-=|..+.+..++|.++|++++.+.=
T Consensus 26 y~d~P~~~A~~~~~~~GA~~iHvV-DLDGA~~g-~~~N~~~i~~I~~~~~~~vQvGGGIRs~e~v~~ll~~Gv~RVI~GT 103 (241)
T TIGR00007 26 YSDDPVEAAKKWEEFQGAKRIHVV-DLDGALEG-GPVNLEVIKKIVEELGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGT 103 (241)
T ss_pred EECCHHHHHHHHHHCCCCCEEEEE-ECCHHHCC-CCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 308989999999841697159998-45100068-6200789999998618517981751688999999973985799733
Q ss_pred CC--CHHHHHCCCCCCCHHHHHHHHHHHHHC-------CCCCCCE-----E-EE-C-CCCCHHHHHHHHHHHHHCC-CCC
Q ss_conf 43--777732058888989999999999987-------9855770-----7-86-6-8989999999999997408-888
Q gi|254780485|r 167 DT--SERFYPHVTTTHTFEDRLQTLENVRKS-------GIKVCCG-----G-IL-G-LGEMIDDRIDMLLTLANLS-TPP 228 (328)
Q Consensus 167 et--~~~~~~~~~~~~~~~~~l~~~~~a~~~-------G~~~~sg-----~-l~-G-~gEt~eeri~~l~~lr~l~-~~~ 228 (328)
=. .|+++. +.+++. |+..--| . .+ | .-+|.-..++.+.++.+++ ..
T Consensus 104 ~A~~~~~~v~---------------~~~~~~g~~~i~V~lD~~~g~~G~~~V~v~GW~E~s~~~~~~~~~~~~~~G~~~- 167 (241)
T TIGR00007 104 AAVENPDLVK---------------ELLKEYGPERIVVSLDARDGEEGVKEVAVKGWKEKSEVSLEELAKRLEELGELE- 167 (241)
T ss_pred EEECCHHHHH---------------HHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCC-
T ss_conf 2210869999---------------999984899659998631488751788874041135627999999985158633-
Q ss_pred CEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHH--HCCCEEEECC
Q ss_conf 60205411204874124456879899999999999968687214231156516568999998--0998899778
Q gi|254780485|r 229 ESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFF--SGANSIFVGD 300 (328)
Q Consensus 229 ~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~--~GaN~~~~g~ 300 (328)
++- .-=+-..||-.-..-.++. +..+ -+++..+..|+| ++--.|.+.+ =. .|+.++++|-
T Consensus 168 -~ii-~TdI~~DGtl~G~n~~~~~-~~~~-------~~~~~~viaSGG-v~s~~D~~~L-~~~~~G~~GvIvGk 229 (241)
T TIGR00007 168 -GII-YTDISRDGTLSGPNFELTK-ELVK-------ALVNVPVIASGG-VSSIDDLRAL-KEIELGVYGVIVGK 229 (241)
T ss_pred -EEE-EEEEECCCCEECCCCCHHH-HHHH-------HHCCCEEEEECC-CCCHHHHHHH-HHCCCCCCEEEEEE
T ss_conf -689-9752006720078732889-9998-------735841899426-5788999999-97159832799862
No 190
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.76 E-value=3.1 Score=21.27 Aligned_cols=181 Identities=16% Similarity=0.172 Sum_probs=102.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
.+..+.|+....++.+.+.|++-+-+.. +.+. -.+.|+.+++..+.+.+-+|. ++.+++++..++|++.+.
T Consensus 21 lr~~~~~~a~~i~~al~~gGi~~iEiTl--~tp~------a~~~I~~l~~~~p~~~vGaGTV~~~e~~~~a~~aGA~FiV 92 (212)
T PRK05718 21 IVINKLEDAVPLAKALVAGGLPVLEVTL--RTPA------ALEAIRAIRKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV 92 (212)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEC--CCCH------HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCEEE
T ss_conf 9748999999999999987997899957--8961------9999999997589817965331348899999984998998
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+| ..+ .++++.+++.|++.-.|.+ |+-|...-+ +.+. +.+- |+|..
T Consensus 93 -----SP--------~~~----~~v~~~a~~~~i~~iPGv~-----TpsEi~~A~----~~G~--~~vK---~FPA~--- 138 (212)
T PRK05718 93 -----SP--------GLT----PPLLKACQDGPIPLIPGVN-----TPSELMLAM----ELGL--RTFK---FFPAE--- 138 (212)
T ss_pred -----CC--------CCC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECCCC---
T ss_conf -----48--------998----9999999981997657869-----999999999----8799--9899---78761---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCC----CCCHHHHHHHHHH
Q ss_conf 244568798999999999999686872142311565165689999980998899778665158----8898999999998
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAK----NPSYNKDTILFNR 319 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~----g~~~~~~~~~i~~ 319 (328)
....-.++|. .|=-+|+..+.-++| + ..+...--| ..+|..-.|+..+..+ ....+++.+..++
T Consensus 139 -----~~gG~~~lka---l~~p~p~i~~~ptGG-V--~~~N~~~yl-~~~~v~avgGS~l~~~~~v~~~d~~~I~~~a~~ 206 (212)
T PRK05718 139 -----ASGGVKMLKA---LAGPFSDVRFCPTGG-I--SPANYRDYL-ALPNVLCIGGSWMVPKDAIENGDWDRITRLARE 206 (212)
T ss_pred -----CCCCHHHHHH---HHCCCCCCEEEECCC-C--CHHHHHHHH-CCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf -----0179999999---856589982886599-8--987899998-178869998735289999864899999999999
No 191
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=84.19 E-value=3.2 Score=21.11 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCC-CC-----CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 0685799999999996498389973036-88-----87442899999887621368832410256999999987415760
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAW-RE-----PKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~-~~-----~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
..+.+++++.+++..+.|+.-+-+++-- ++ +...+++++...++.+++.. .+.+|+-+...+.+++--++|++
T Consensus 20 ~~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~Rl~pvi~~l~~~~-~~~iSIDT~~~~Va~~al~~Ga~ 98 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEECCCHHHHHHHHHCCCC
T ss_conf 88999999999999987998999798758999986998888988999999998607-98289979975999999984998
Q ss_pred EEE-E-ECCCCHHHHHC-------C---C----CC-----CCHH-------HHH-HHHHHHHHCCCCCCCEEE---ECCC
Q ss_conf 697-5-13437777320-------5---8----88-----8989-------999-999999987985577078---6689
Q gi|254780485|r 161 YYN-H-NIDTSERFYPH-------V---T----TT-----HTFE-------DRL-QTLENVRKSGIKVCCGGI---LGLG 208 (328)
Q Consensus 161 ~~~-~-~let~~~~~~~-------~---~----~~-----~~~~-------~~l-~~~~~a~~~G~~~~sg~l---~G~g 208 (328)
.++ + .+...++.+.. + | |. ..|+ +|+ +.++.+.+.|++..-=++ +|.|
T Consensus 99 iINDisg~~~d~~m~~~va~~~~~~ilmH~~g~p~~m~~~~~~~dv~~~i~~~f~~~i~~l~~~Gi~~~~IiiDPG~GFg 178 (257)
T cd00739 99 IINDVSGGSDDPAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFG 178 (257)
T ss_pred EEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
T ss_conf 99753424477789999998499999976899842223378633099999999999999999879982519970887878
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 89999999999997408
Q gi|254780485|r 209 EMIDDRIDMLLTLANLS 225 (328)
Q Consensus 209 Et~eeri~~l~~lr~l~ 225 (328)
-|.++=++.|..|..+.
T Consensus 179 Kt~~~n~~ll~~l~~f~ 195 (257)
T cd00739 179 KTPEHNLELLRRLDELK 195 (257)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 88799999999899995
No 192
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=83.98 E-value=3.3 Score=21.05 Aligned_cols=174 Identities=16% Similarity=0.153 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEEEECC
Q ss_conf 857999999999964983899730368887442899999887621368832410256-9999999874157606975134
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~~~le 167 (328)
+.|--++.|+++.+.|+..+|+--...-..+.....++..+|..-..++++|.|... +....+-.-.+||+|.+-..+.
T Consensus 161 t~~yy~~~ak~l~~~Gad~I~iKDmaGlL~P~~a~~LV~~lK~~~~iPI~~HtH~t~Gla~a~~laAieAGaDiVD~Ai~ 240 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALS 240 (468)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf 49999999999997399989984787776889999999999836798659982588754999999999819999974464
Q ss_pred CCHHHHHCCCCCCCHHHHHHHH-HHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCC--C---CCE--E-ECCCEE
Q ss_conf 3777732058888989999999-999987985577078668-9899999999999974088--8---860--2-054112
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTL-ENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLST--P---PES--I-PINLLI 237 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~-~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~--~---~~~--v-~~~~~~ 237 (328)
..-. .+.+.. ++++ ..++..|..+ |+ .+-.++..+++..+|+... . +.. . +-....
T Consensus 241 ~~s~-----gtSqP~---~~s~v~~l~~~~~~~------~ld~~~l~~~~~y~~~vr~~y~~~~~~~~~~~~~d~~v~~h 306 (468)
T PRK12581 241 PFSE-----GTSQPA---TESMYLALKEAGYDI------TLDETLLEQAANHLRQARQKYLADGILDPSLLFPDPRTLQY 306 (468)
T ss_pred CCCC-----CCCCCC---HHHHHHHHHCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCC
T ss_conf 5357-----988866---999999973389887------66889999999999999998742355786556788145316
Q ss_pred ECCCCCCCCC----CC--C--CHHHHHHHHHHHHHHCCCCCCEEEEHH
Q ss_conf 0487412445----68--7--989999999999996868721423115
Q gi|254780485|r 238 PIPGSKFEEN----KK--V--DPIEHVRIISVARILMPKSRLRLAAGR 277 (328)
Q Consensus 238 p~~gt~l~~~----~~--~--~~~e~lr~iAi~RL~lP~~~i~i~~~~ 277 (328)
+.||.-+.+. .. . .-.|.++.++-.|-.+-+. +.++-+.
T Consensus 307 qiPGGm~sNl~~Ql~~~g~~dr~~eV~~e~~~Vr~~lG~~-~~VTPsS 353 (468)
T PRK12581 307 QVPGGMLSNMLSQLKQANAESKLEEVLAEVPRVRKDLGYP-PLVTPLS 353 (468)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-CEECCHH
T ss_conf 6823478889999997783645999999999999966999-8369754
No 193
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=83.79 E-value=3.4 Score=21.00 Aligned_cols=198 Identities=9% Similarity=0.053 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHCCCCCEEEEECC
Q ss_conf 579999999999649838997-3036888744289999988762136-88324102569999999874157606975134
Q gi|254780485|r 90 VDQVLKEAKNAKENGATRYCM-GAAWREPKERDLSIIVDMIKGVKSL-GLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 90 ~Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328)
.-.+.++++.+.+.|+..+++ +.-|+--+.. ..-...++.++.. ...+|.-+- -.+..+..+.++|++.+..-.|
T Consensus 24 ~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNi--tfg~~~v~~l~~~~~~DvHLMV~-~P~~~i~~~~~aGad~it~H~E 100 (235)
T PRK08091 24 WLALHRYLQQLEALNQPLLHFDIMDGQFSPQF--TVGPWAVGQFPQTFIKDVHLMVA-DQWTVAKACVKAGAHCITLQAE 100 (235)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CCCHHHHHHHCCCCCCCEEEEEC-CHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999999977999999818588767843--22899999737499972664338-8899999999759989997545
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC---CCEEEECC---CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC
Q ss_conf 37777320588889899999999999879855---77078668---9899999999999974088886020541120487
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKV---CCGGILGL---GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPG 241 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~---~sg~l~G~---gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g 241 (328)
+.... .++++..++.+.+. ..++..|+ .+|+-+.++.++. ++ +.|-+.-. .||
T Consensus 101 a~~~~-------------~~~i~~i~~~~~~~~~~~~~~~~GlAlnP~Tpve~l~~~L~--~v----D~VLvMtV--~PG 159 (235)
T PRK08091 101 GDIHL-------------HHTLSWLGQQTVPVIGGEMPVLRGISLCPATPLDVLIPYLS--DV----DVIQLLTL--DPR 159 (235)
T ss_pred CCCCH-------------HHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCHHHHHHHHH--HC----CEEEEEEE--CCC
T ss_conf 55588-------------99999999834202222207501389799998899999870--53----99999876--689
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 4124456879899999999999968687----214231156516568999998099889977866515888989999999
Q gi|254780485|r 242 SKFEENKKVDPIEHVRIISVARILMPKS----RLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILF 317 (328)
Q Consensus 242 t~l~~~~~~~~~e~lr~iAi~RL~lP~~----~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i 317 (328)
+.+..-. + +.+.-|.-+|-++++. .|.+-+ .+..+....+..+|||.++.|.++-.+ ..+.+-++-+
T Consensus 160 --fgGQ~fi-~-~~l~KI~~l~~~~~~~~~~~~I~VDG---GI~~~ti~~~~~aGad~~V~GS~iF~~--~d~~e~i~~l 230 (235)
T PRK08091 160 --YGSKMRS-S-DLHERVAQLLCLLGDKREGKLIVIDG---SMTQDQLPSLIAQGIDWVVSGSALFSD--DRLVENLRSW 230 (235)
T ss_pred --CCCCCCC-H-HHHHHHHHHHHHHHHCCCCCEEEEEC---CCCHHHHHHHHHCCCCEEEECHHHCCC--CCHHHHHHHH
T ss_conf --8888678-7-89999999999999649991599848---989888999998399999978243379--9999999999
Q ss_pred HHC
Q ss_conf 982
Q gi|254780485|r 318 NRL 320 (328)
Q Consensus 318 ~~~ 320 (328)
|++
T Consensus 231 k~l 233 (235)
T PRK08091 231 KAM 233 (235)
T ss_pred HHH
T ss_conf 985
No 194
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=83.34 E-value=3.5 Score=20.88 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=49.6
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCC--CHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 999999649838997303688874428999998876213688324102569--999999874157606975134377773
Q gi|254780485|r 96 EAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGML--SFEQAQILSKAGLDYYNHNIDTSERFY 173 (328)
Q Consensus 96 ~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~--~~~~~~~Lk~aG~~~~~~~let~~~~~ 173 (328)
-|....+.|.-.+. + ....++.+.+.++.++.. ..+.+++|.. ..+.+..|.++|++.+. ++++.
T Consensus 50 mA~~la~~Gglgvl----h---r~~~~e~~~~~v~~vk~~-~~v~aaig~~~~~~~r~~~l~~ag~d~i~--IDvAh--- 116 (325)
T cd00381 50 MAIAMARLGGIGVI----H---RNMSIEEQAEEVRKVKGR-LLVGAAVGTREDDKERAEALVEAGVDVIV--IDSAH--- 116 (325)
T ss_pred HHHHHHHCCCEEEE----E---CCCCHHHHHHHHHHHHCC-EEEEEEECCCHHHHHHHHHHHHCCCCEEE--EECHH---
T ss_conf 99999977996899----4---358889999999975047-69999976686289999999976998999--87000---
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHH
Q ss_conf 205888898999999999998798557707866898999999
Q gi|254780485|r 174 PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRI 215 (328)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri 215 (328)
.|+ +.-++.++..++.-- ...+|.|=.-|.+-..
T Consensus 117 -----G~~-~~~~~~ik~ir~~~p--~~~IiaGNV~T~e~a~ 150 (325)
T cd00381 117 -----GHS-VYVIEMIKFIKKKYP--NVDVIAGNVVTAEAAR 150 (325)
T ss_pred -----CCC-HHHHHHHHHHHHHCC--CCCEEECCCCCHHHHH
T ss_conf -----345-889999999997689--9756864566899999
No 195
>pfam00809 Pterin_bind Pterin binding enzyme. This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyses a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin.
Probab=83.10 E-value=3.6 Score=20.82 Aligned_cols=75 Identities=24% Similarity=0.380 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCC-CC-----CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 0685799999999996498389973036-88-----87442899999887621368832410256999999987415760
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAW-RE-----PKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~-~~-----~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
..+.+..++.|+...+.|+.-+-+++-. ++ +...+++++...++.++... +.+|+-+...+.+++--++|++
T Consensus 15 ~~~~~~a~~~a~~~i~~GAdiIDIG~eSTrPga~~v~~~eE~~Rl~pvl~~l~~~~--~~iSIDT~~~~v~~~al~~G~~ 92 (208)
T pfam00809 15 FLSPDKALEQAREMVEEGADIIDIGGESTRPGAGMVSGEEELERLVPVLEALRDQD--VPISIDTFNAEVAEAALKAGAD 92 (208)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCEEEECCCHHHHHHHHHCCCC
T ss_conf 78999999999999987998998689768999864688999999999999863579--8289979849999999981993
Q ss_pred EEE
Q ss_conf 697
Q gi|254780485|r 161 YYN 163 (328)
Q Consensus 161 ~~~ 163 (328)
.++
T Consensus 93 iIN 95 (208)
T pfam00809 93 IIN 95 (208)
T ss_pred EEE
T ss_conf 898
No 196
>PRK09776 putative sensor protein; Provisional
Probab=82.86 E-value=3.7 Score=20.76 Aligned_cols=14 Identities=7% Similarity=-0.116 Sum_probs=7.7
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 89999999982985
Q gi|254780485|r 310 YNKDTILFNRLGLI 323 (328)
Q Consensus 310 ~~~~~~~i~~~G~~ 323 (328)
..+..+.++++|..
T Consensus 1000 ~~~~l~~Lr~lGi~ 1013 (1116)
T PRK09776 1000 ASRLVQKLRLAGCR 1013 (1116)
T ss_pred HHHHHHHHHHCCCE
T ss_conf 99999999978999
No 197
>PRK09358 adenosine deaminase; Provisional
Probab=82.83 E-value=3.7 Score=20.75 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 9899999999999879855770
Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKVCCG 202 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~G~~~~sg 202 (328)
++.+.....+.|++.|++++.+
T Consensus 175 ~~~~f~~~f~~ar~~gl~~t~H 196 (333)
T PRK09358 175 PPSKFARAFDIARDAGLRLTAH 196 (333)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8687999999999859923330
No 198
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=3.8 Score=20.66 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH-------------------HHCCCC--CCEEEEC--
Q ss_conf 06857999999999964983899730368887442899999887-------------------621368--8324102--
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIK-------------------GVKSLG--LETCMTL-- 143 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~-------------------~i~~~~--~~i~~~~-- 143 (328)
-.+.+++.+.++.+++.|.+-++.+...- .....+.+.+.++ .+++.+ +.+|+|.
T Consensus 45 nfs~~~l~e~i~~ah~~gkk~~V~~N~~~--~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~ 122 (347)
T COG0826 45 NFSVEDLAEAVELAHSAGKKVYVAVNTLL--HNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPDLPIHVSTQA 122 (347)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCC--CCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 48989999999999986994999965541--6410568999999999759878997188999999975899868996567
Q ss_pred CCCCHHHHHHHHCCCCCEEEEE
Q ss_conf 5699999998741576069751
Q gi|254780485|r 144 GMLSFEQAQILSKAGLDYYNHN 165 (328)
Q Consensus 144 g~~~~~~~~~Lk~aG~~~~~~~ 165 (328)
...+.+.++-+++.|+.++.+-
T Consensus 123 ~v~N~~~~~f~~~~G~~rvVl~ 144 (347)
T COG0826 123 NVTNAETAKFWKELGAKRVVLP 144 (347)
T ss_pred ECCCHHHHHHHHHCCCEEEEEC
T ss_conf 2178999999997698799817
No 199
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=82.37 E-value=3.8 Score=20.64 Aligned_cols=14 Identities=7% Similarity=-0.036 Sum_probs=6.4
Q ss_pred EECCCEEECCCCCC
Q ss_conf 20541120487412
Q gi|254780485|r 231 IPINLLIPIPGSKF 244 (328)
Q Consensus 231 v~~~~~~p~~gt~l 244 (328)
|.+|.|......|+
T Consensus 455 VGVN~y~~~~e~~l 468 (715)
T PRK09426 455 VGVNKYRLEKEDPI 468 (715)
T ss_pred EECCCCCCCCCCCC
T ss_conf 83589998666766
No 200
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=81.98 E-value=3.9 Score=20.54 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 799999999996498389973036888744289999988762-136883241025699999998741576069751343-
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT- 168 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let- 168 (328)
...++.|+...+.|+.+++++--...... -..-.++++.+ ++.++.+.+.-|..+.++.+++-+.|++.+.++-..
T Consensus 30 gdP~~~ak~~~~~g~d~lhivDld~a~~~--~~~n~~~I~~i~~~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~ 107 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRG--REPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAAL 107 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCHHHHHHHHHHHCCCCEEEEECEEEHHHHHHHHHCCCCEEEECHHHH
T ss_conf 89999999999869999999968764348--8217999999999729858997133038999999976996899345452
Q ss_pred -CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCE------------EEECC---CCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf -777732058888989999999999987985-5770------------78668---989999999999997408888602
Q gi|254780485|r 169 -SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCG------------GILGL---GEMIDDRIDMLLTLANLSTPPESI 231 (328)
Q Consensus 169 -~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg------------~l~G~---gEt~eeri~~l~~lr~l~~~~~~v 231 (328)
.|.+.. +.+.+.|-+ +... -++-. ..+..+..+++..+.+++. ..+
T Consensus 108 ~~p~~~~---------------~~~~~~G~q~ivvsiD~k~~~~~~~~~v~~~g~~~~~~~~~~~~i~~~~~~g~--gei 170 (232)
T TIGR03572 108 ENPDLIE---------------EAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGA--GEI 170 (232)
T ss_pred HCCHHHH---------------HHHHHCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCC--CEE
T ss_conf 1935778---------------99998699458999998416778727999667763579879999999873599--899
Q ss_pred ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECC
Q ss_conf 054112048741244568798999999999999686872142311565165689999980998899778
Q gi|254780485|r 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD 300 (328)
Q Consensus 232 ~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~ 300 (328)
-+ .-+-..|| +.+ + ..+.++-++ -.. +..+.+++| .+-..++.++.-..|++++.+|.
T Consensus 171 i~-tdI~~DG~-~~G---~-d~~l~~~i~---~~~-~~piiasGG-i~~~~di~~l~~~~~~~gv~~gs 228 (232)
T TIGR03572 171 LL-NSIDRDGT-MKG---Y-DLELIKTVS---DAV-SIPVIALGG-AGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred EE-EEECCCCC-CCC---C-CHHHHHHHH---HHC-CCCEEEECC-CCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 99-88857685-676---8-999999999---868-999999889-89999999999858981999721
No 201
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=81.94 E-value=4 Score=20.53 Aligned_cols=177 Identities=16% Similarity=0.143 Sum_probs=100.3
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99999999649838997303688874428999998876213688324102569999999874157606975134377773
Q gi|254780485|r 94 LKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFY 173 (328)
Q Consensus 94 ~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~ 173 (328)
.+.|+.....|+.-+.+.+ ....+...++++.. ++. ...+.+...-+..++.+...-+.+|+|.+.+=+..-
T Consensus 69 ~~ia~~Ye~~GAa~iSVLT-d~~~F~Gs~e~L~~-v~~--~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L---- 140 (254)
T COG0134 69 VEIAKAYEEGGAAAISVLT-DPKYFQGSFEDLRA-VRA--AVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL---- 140 (254)
T ss_pred HHHHHHHHHHCCEEEEEEC-CCCCCCCCHHHHHH-HHH--HCCCCEEECCCCCCHHHHHHHHHCCCCCHHHHHHHC----
T ss_conf 9999999973984899963-76646987899999-998--558982644677889999999980856199999963----
Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHH
Q ss_conf 20588889899999999999879855770786689899999999999974088886020541120487412445687989
Q gi|254780485|r 174 PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPI 253 (328)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~ 253 (328)
+.++--+..+.|+++||.+ ++-. .+.+ .+.+.-+++. .-|++|. ..+.. ..
T Consensus 141 -------~~~~l~el~~~A~~LGm~~----LVEV-h~~e----El~rAl~~ga--~iIGINn------RdL~t-----f~ 191 (254)
T COG0134 141 -------DDEQLEELVDRAHELGMEV----LVEV-HNEE----ELERALKLGA--KIIGINN------RDLTT-----LE 191 (254)
T ss_pred -------CHHHHHHHHHHHHHCCCCE----EEEE-CCHH----HHHHHHHCCC--CEEEEEC------CCCCH-----HE
T ss_conf -------9999999999999769923----8997-8999----9999996799--8899837------88402-----10
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCC
Q ss_conf 9999999999968687214231156516568999998099889977866515888
Q gi|254780485|r 254 EHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNP 308 (328)
Q Consensus 254 e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~ 308 (328)
-.+.+..-..=++|.-.+.|+-|=.. .++--.....+|||+.++|+.+..+.+.
T Consensus 192 vdl~~t~~la~~~p~~~~~IsESGI~-~~~dv~~l~~~ga~a~LVG~slM~~~~~ 245 (254)
T COG0134 192 VDLETTEKLAPLIPKDVILISESGIS-TPEDVRRLAKAGADAFLVGEALMRADDP 245 (254)
T ss_pred ECHHHHHHHHHHCCCCCEEEECCCCC-CHHHHHHHHHCCCCEEEECHHHHCCCCH
T ss_conf 06889999884487775899617989-9999999997489989963888569998
No 202
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=81.69 E-value=4 Score=20.47 Aligned_cols=188 Identities=16% Similarity=0.180 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCHHHHHHHHHHHCCC-CCCEEEECC------CCC-HHH---HHHH
Q ss_conf 68579999999999649838997303688874--4289999988762136-883241025------699-999---9987
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKE--RDLSIIVDMIKGVKSL-GLETCMTLG------MLS-FEQ---AQIL 154 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~--~~~~~~~e~i~~i~~~-~~~i~~~~g------~~~-~~~---~~~L 154 (328)
.+.+++.+.+......|++.++-..|. .|.. ....|-.++++.|++. +..|.+... ..+ +.+ +++-
T Consensus 94 ~t~~~i~~~L~~~~~~GI~nILALRGD-~P~g~~~~~~yA~dLV~~Ir~~~~f~I~VAaYPE~HPea~~~~~Di~~Lk~K 172 (296)
T PRK09432 94 ATPEELRTIAKDYWNNGIRHIVALRGD-LPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHPEAKSAQADLINLKRK 172 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999999999999997597548654898-9999998874689999999983698268742888786510067899999999
Q ss_pred HCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCC--CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 4157606975134377773205888898999999999998798--55770786689899999999999974088886020
Q gi|254780485|r 155 SKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGI--KVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP 232 (328)
Q Consensus 155 k~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~--~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~ 232 (328)
-++|++.... .=+ .+.+..++.++.++++|+ ++-.|+|- .-+.. -+.++.++ .++.
T Consensus 173 vdaGAdf~IT-----Q~F-------FD~e~f~~f~d~~~~~GI~vPIiPGImP--i~~~~----~~~r~~~~----~g~~ 230 (296)
T PRK09432 173 VDAGANRAIT-----QFF-------FDVESYLRFRDRCVSAGIDVEIVPGILP--VSNFK----QLKKFADM----TNVR 230 (296)
T ss_pred HHCCCCEEEE-----EHE-------ECHHHHHHHHHHHHHCCCCCCCCCCEEE--CCCHH----HHHHHHHH----HCCC
T ss_conf 9746664630-----020-------0499999999999985999740123010--25789----99999998----1998
Q ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHH
Q ss_conf 54112048741244568798999999999999686872142311565165689999980998899778665158889899
Q gi|254780485|r 233 INLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNK 312 (328)
Q Consensus 233 ~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~ 312 (328)
+|...- ..++... +..+..+.+. |.+ .-++.+..+..|++++=. + |- | ..+-
T Consensus 231 iP~~l~---~~le~~~--~d~e~~~~~G----------i~~-------a~~q~~~L~~~Gv~glHf---Y-Tl-N-~~~~ 282 (296)
T PRK09432 231 IPSWMA---KMFDGLD--DDAETRKLVG----------ASI-------AMDMVKILSREGVKDFHF---Y-TL-N-RAEL 282 (296)
T ss_pred CHHHHH---HHHHCCC--CCHHHHHHHH----------HHH-------HHHHHHHHHHCCCCEEEE---E-CC-C-CHHH
T ss_conf 869999---9986018--9999999999----------999-------999999999779995599---3-28-9-8399
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 99999982985324
Q gi|254780485|r 313 DTILFNRLGLIPDL 326 (328)
Q Consensus 313 ~~~~i~~~G~~P~~ 326 (328)
..+.++.+|+.|-+
T Consensus 283 t~~I~~~LGl~p~~ 296 (296)
T PRK09432 283 TYAICHTLGVRPGL 296 (296)
T ss_pred HHHHHHHHCCCCCC
T ss_conf 99999995899999
No 203
>PRK13129 consensus
Probab=81.43 E-value=4.1 Score=20.42 Aligned_cols=185 Identities=14% Similarity=0.106 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-----------------CHHHHHHHHHHHCCC-CCC-EEE---ECC--
Q ss_conf 85799999999996498389973036888744-----------------289999988762136-883-241---025--
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKER-----------------DLSIIVDMIKGVKSL-GLE-TCM---TLG-- 144 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~-----------------~~~~~~e~i~~i~~~-~~~-i~~---~~g-- 144 (328)
+.|.-++.++.+.+.|+.-+-++ -...++.- .++.++++++.+++. ... +.+ |+-
T Consensus 31 ~~e~s~~~~~~l~~~GaDiiEiG-iPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~PivlM~Y~N~i~~ 109 (267)
T PRK13129 31 DLETTAEALLILQENGADLIELG-IPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGKLTIPIILFTYYNPLLN 109 (267)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHHHH
T ss_conf 98999999999997799999979-98888776589999999999976987899999999854347888899861078988
Q ss_pred CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 69999999874157606975134377773205888898999999999998798557707866898999999999999740
Q gi|254780485|r 145 MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 145 ~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
.-.+.-+++.+++|++.+++ |.-.+++--+..+.+++.|+..- .++- --|.++|+..+....
T Consensus 110 ~G~e~F~~~~~~~GvdGvIi-------------pDLP~eE~~~~~~~~~~~gl~~I--~lva-Ptt~~~Ri~~i~~~~-- 171 (267)
T PRK13129 110 RGMERFCEQAAAAGVAGLVV-------------PDLPLEEAEKLSPIAAERGIDLI--LLVA-PTTPAERMKRIAQQS-- 171 (267)
T ss_pred HHHHHHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHCCCEEE--EEEC-CCCCHHHHHHHHHCC--
T ss_conf 55999999998669875767-------------89998999999999985398168--9948-999689999998168--
Q ss_pred CCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 8888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 225 STPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 225 ~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
..++ ..+...|+.-.. ..-+.+....+.-.|-.- .+++..|-.--.++.......+|||++++|..++
T Consensus 172 ---~gFi---Y~vs~~GvTG~~--~~~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e~v~~~~~~~ADGvIVGSaiV 239 (267)
T PRK13129 172 ---RGFT---YLVSVTGVTGER--SQMENRVESLLQQLRQVT---SKPIAVGFGISGPEQARQVREWGADGAIVGSAFV 239 (267)
T ss_pred ---CCEE---EEEECCCCCCCC--CCCCHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf ---9808---987346656765--445088999999999834---8981788447999999999854999999878999
No 204
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=81.43 E-value=4.1 Score=20.41 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--........ .-.++++.+ ++.++.+.+.-|..+.++.+++.++|++.+.++=-.
T Consensus 31 dP~~~ak~f~~~GadelhivDld~a~~g~~--~n~~~I~~I~~~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~ 108 (253)
T PRK01033 31 DPINAVRIFNEKEADELIVLDIDASRKGRE--PNYELIENLASECFMPLCYGGGIKTVEQAKRIFSLGVEKVSISTAALE 108 (253)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCC--CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 999999999987999899994745424880--169999999987699889868812168889998679866999987863
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEE-------------EEC-CCCCHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 777732058888989999999999987985-57707-------------866-898999999999999740888860205
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGG-------------ILG-LGEMIDDRIDMLLTLANLSTPPESIPI 233 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~-------------l~G-~gEt~eeri~~l~~lr~l~~~~~~v~~ 233 (328)
.|.+..+ .+.+.|-+ +...+ +-| --.+.-+..+++..+.+++. ..+-+
T Consensus 109 ~p~~i~~---------------~~~~fG~q~IvvsiD~k~~~~~~~~v~~~g~~~~t~~~~~~~~~~~~~~g~--geil~ 171 (253)
T PRK01033 109 DPKLITE---------------AAEIYGSQSVVVSIDVKKRLFGRYDVYTHNGTKKTGLDPVEFAKQAEELGA--GEIVL 171 (253)
T ss_pred CCHHHHH---------------HHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCC--CEEEE
T ss_conf 7416578---------------998779976999999824877834789867953678558999999874697--79999
Q ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf 411204874124456879899999999999968687214231156516568999998099889977866
Q gi|254780485|r 234 NLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 234 ~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
.-+-..|| +. .++ .+.++-++ .. . +..+.+++| .+-..++..+--..|++++++|.-+
T Consensus 172 -TdI~rDGt-~~---G~d-~~l~~~i~--~~-~-~ipiIasGG-i~s~~di~~l~~~~~v~gv~~gs~F 229 (253)
T PRK01033 172 -NSIDRDGV-MK---GYD-LELIKKIS--SA-V-KIPVTALGG-AGSLDDIADLIQEAGASAAAAGSLF 229 (253)
T ss_pred -EEECCCCC-CC---CCC-HHHHHHHH--HH-C-CCCEEEECC-CCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf -87848897-66---879-99999999--87-8-999999789-8999999999986797399783168
No 205
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=81.18 E-value=4.2 Score=20.36 Aligned_cols=180 Identities=14% Similarity=0.066 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCC--C---------CCCCCCCCC------CCHHHH
Q ss_conf 91899999999988862898569998645307868342321243354--7---------775641000------685799
Q gi|254780485|r 31 PFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVH--N---------KSKLKASKL------INVDQV 93 (328)
Q Consensus 31 ~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~--~---------~~~~~~~~~------~~~Eei 93 (328)
.+.+++.+++-.-.+++.-+.+.+.+.+.+- .=..+|.+ .|... + ......... -....+
T Consensus 35 ~d~~~~~e~~~~~~~~~~~D~~~i~~Di~~~--~ea~G~~~-~~~~~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (330)
T cd03465 35 TDPELGAEAQIALYKKFGPDAIKVFSDLFVE--AEAFGAEI-RYPEDDTPSVEGPLIEDEEEDDDLLPPDPGDSPRLPEL 111 (330)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCHHH--HHHCCCEE-EECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHH
T ss_conf 6999999999999998098889705640267--99849737-76799898778888887888863379962255569999
Q ss_pred HHHHHHHHHC-CCEEEEEECCCCCCCCCCHHHHH---HHHHHHCCCCCCEEE---ECCCCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 9999999964-98389973036888744289999---988762136883241---0256999999987415760697513
Q gi|254780485|r 94 LKEAKNAKEN-GATRYCMGAAWREPKERDLSIIV---DMIKGVKSLGLETCM---TLGMLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 94 ~~~a~~~~~~-G~~~~~l~~~~~~~~~~~~~~~~---e~i~~i~~~~~~i~~---~~g~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
++.++...+. |-....++..+ .|.. -..|+. +.++.+++..-.++. -+.....+.++...++|++.+.+..
T Consensus 112 ~eai~~l~~~~~~~~plig~~g-gP~T-la~~l~g~~~~~~~l~~~p~~~~~ll~~~t~~~~~~~~~qi~aGad~i~i~d 189 (330)
T cd03465 112 LEAIRLLKEELGDRVPVIGAVG-GPFT-LASLLMGASKFLMLLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYISD 189 (330)
T ss_pred HHHHHHHHHHCCCCCCEEEECC-CHHH-HHHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999999997289874797556-5799-9887318489999999799999999999999999999999963998899835
Q ss_pred CC------CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 43------7777320588889899999999999879855770786689899999999999974088
Q gi|254780485|r 167 DT------SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 167 et------~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~ 226 (328)
.. +++.|.+.. +..-.++++.+++.+.++ +++=-|.+. .++..+++++.
T Consensus 190 ~~a~~~~ls~~~f~~f~----~p~~k~i~~~~~~~~~~~---ilh~~g~~~----~~l~~~~~~~~ 244 (330)
T cd03465 190 PWASSSILSPEDFKEFS----LPYLKKVFDAIKALGGPV---IHHNCGDTA----PILELMADLGA 244 (330)
T ss_pred CCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHCCCCE---EEECCCCHH----HHHHHHHHCCC
T ss_conf 66665569999999998----999999999977549983---674078628----79999986588
No 206
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=81.13 E-value=4.2 Score=20.35 Aligned_cols=202 Identities=16% Similarity=0.211 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH------HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 68579999999999649838997303688874428------99999887621-368832410256999999987415760
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDL------SIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~------~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
-+.|++.+.|+..++.|++-+ =+|-+.|..+++ +.=+..++..+ +.++.+-.. .++.+++....+. +|
T Consensus 36 Es~eq~~~~A~~vk~~Ga~~L--RGGAfKPRTSPYsFQGlg~~gl~~l~~A~~~~GL~~vTE--vmd~~d~e~~~~y-~D 110 (262)
T TIGR01361 36 ESEEQIVETARFVKEAGAKIL--RGGAFKPRTSPYSFQGLGEEGLKLLRRAADETGLPVVTE--VMDPRDVEIVAEY-AD 110 (262)
T ss_pred CCHHHHHHHHHHHHHCCCCEE--ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE--EECHHHHHHHHHH-HH
T ss_conf 887999999999986674043--066348888884124741899999999998609948988--6362567778765-11
Q ss_pred EEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCHHHHHHHHHHHHHCCCCCCEEEC--CCE
Q ss_conf 697513437777320588889899999999999879855770786--6898999999999999740888860205--411
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GLGEMIDDRIDMLLTLANLSTPPESIPI--NLL 236 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~gEt~eeri~~l~~lr~l~~~~~~v~~--~~~ 236 (328)
.+ . =+-.-.+=.+-++.+.+.+-|+ |. |++-|.+|++.-.++|-.-+..++-|-+ ...
T Consensus 111 ~l----Q----------iGARNmQNF~LL~~vG~~~KPV----LLKRG~~aTi~EwL~AAEYIl~~GsN~~ViLCERGIR 172 (262)
T TIGR01361 111 IL----Q----------IGARNMQNFELLKEVGKQGKPV----LLKRGMGATIEEWLEAAEYILSEGSNGNVILCERGIR 172 (262)
T ss_pred HH----H----------HCCCCCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 34----2----------2254122569999972237975----5307721589999999999984688995489975856
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHH--CCC-CCCEEEEHHHHHCHHHHHHHHHHCCCEEEECC-----EEECCCC-
Q ss_conf 20487412445687989999999999996--868-72142311565165689999980998899778-----6651588-
Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARIL--MPK-SRLRLAAGRAMMSDELQALCFFSGANSIFVGD-----TLLTAKN- 307 (328)
Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~--lP~-~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~-----~~~t~~g- 307 (328)
++-+-|+ -.-++-.|+++|-+ ||= +.+.=++||=.+-..+..-|+-+|||++|+|= +=+ +++
T Consensus 173 TfE~~TR--------~TLD~saV~~~K~~tHLPi~VDPSH~~GrRdLV~plA~AA~A~GADgl~iEVHp~Pe~AL-SD~~ 243 (262)
T TIGR01361 173 TFEKSTR--------NTLDLSAVPLLKKETHLPIIVDPSHAAGRRDLVLPLAKAAIAAGADGLMIEVHPDPEKAL-SDSK 243 (262)
T ss_pred CCCCHHH--------HHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHC-CCCC
T ss_conf 7630024--------533378999998605898787187987624578899999897574736898667833320-7871
Q ss_pred --CCH-HHHHHHHHHCC
Q ss_conf --898-99999999829
Q gi|254780485|r 308 --PSY-NKDTILFNRLG 321 (328)
Q Consensus 308 --~~~-~~~~~~i~~~G 321 (328)
-++ ++...+++++.
T Consensus 244 Qql~~c~~f~~~~~~~~ 260 (262)
T TIGR01361 244 QQLTPCEEFKRLVKELR 260 (262)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 14466788999999850
No 207
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=80.96 E-value=4.3 Score=20.31 Aligned_cols=100 Identities=18% Similarity=0.095 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCCCC-HHHHHHHHHHHCCCC---CCEEE--ECCCC-C----HHH--
Q ss_conf 0068579999999999649838997303688--87442-899999887621368---83241--02569-9----999--
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWRE--PKERD-LSIIVDMIKGVKSLG---LETCM--TLGML-S----FEQ-- 150 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~--~~~~~-~~~~~e~i~~i~~~~---~~i~~--~~g~~-~----~~~-- 150 (328)
...+.+++.+.++.+.+.|+++++..+|..+ +.... +.|-.++++.+|... ..+.+ ++..- . ..+
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~ 166 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIK 166 (291)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 68898999999999998188559994589877788786546899999999985689735899867887844100578999
Q ss_pred -HHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf -99874157606975134377773205888898999999999998798
Q gi|254780485|r 151 -AQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGI 197 (328)
Q Consensus 151 -~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~ 197 (328)
+++=.++|++.+..- - -.+.+.+....+..+.+|+
T Consensus 167 ~lkrKv~aGAd~~iTQ-----~-------~fd~e~~~~~~~~~~~~g~ 202 (291)
T COG0685 167 RLKRKVDAGADFFITQ-----F-------FFDVEAFERFAERVRAAGI 202 (291)
T ss_pred HHHHHHHCCCCEEEEE-----E-------CCCHHHHHHHHHHHHHCCC
T ss_conf 9999986588657642-----0-------1689999999999986389
No 208
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=80.14 E-value=4.5 Score=20.13 Aligned_cols=201 Identities=14% Similarity=0.181 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH------HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 68579999999999649838997303688874428------99999887621-368832410256999999987415760
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDL------SIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~------~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
-+.|++...|+..+..|+.-+. +|-..|..+++ +.-+...+..+ +.++.+... .++..++....+. +|
T Consensus 56 Es~E~i~~~A~~vk~~Ga~~lR--GgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtE--vm~~~~~e~~~~y-~D 130 (286)
T COG2876 56 ESEEQVRETAESVKAAGAKALR--GGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTE--VMDVRDVEAAAEY-AD 130 (286)
T ss_pred CCHHHHHHHHHHHHHCCHHHCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE--ECCHHHHHHHHHH-HH
T ss_conf 7799999999999873622313--77678889953336657788999999888729905889--5489899999866-16
Q ss_pred EEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCHHHHHHHHHHHHHCCCCCCEEEC--CCE
Q ss_conf 697513437777320588889899999999999879855770786--6898999999999999740888860205--411
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GLGEMIDDRIDMLLTLANLSTPPESIPI--NLL 236 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~gEt~eeri~~l~~lr~l~~~~~~v~~--~~~ 236 (328)
.+-+ +...-+-++.++.+.+.+.++ ++ |++-|.||.+.-...+-.-+ .++-|-+ ...
T Consensus 131 ilqv--------------GARNMQNF~LLke~G~~~kPv----LLKRg~~aTieEwL~AAEYI~s~G-N~~vILCERGIR 191 (286)
T COG2876 131 ILQV--------------GARNMQNFALLKEVGRQNKPV----LLKRGLSATIEEWLNAAEYILSHG-NGNVILCERGIR 191 (286)
T ss_pred HHHH--------------CCCCHHHHHHHHHHCCCCCCE----EEECCCCCCHHHHHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 9886--------------332005169999823559976----972474124999999999999679-995799714433
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHH--CCC-CCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE-----EECCC--
Q ss_conf 20487412445687989999999999996--868-721423115651656899999809988997786-----65158--
Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARIL--MPK-SRLRLAAGRAMMSDELQALCFFSGANSIFVGDT-----LLTAK-- 306 (328)
Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~--lP~-~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~-----~~t~~-- 306 (328)
+.-..|++ .-++-.|++.|-. ||= +.+.=++||-.+-..+...++-+|||++|++-. -+.-+
T Consensus 192 tfe~~TRn--------tLDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Q 263 (286)
T COG2876 192 TFEKATRN--------TLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQ 263 (286)
T ss_pred CCCCCCCC--------EECHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 45556664--------2236888888761578779878776553135788899998616773699964795434576000
Q ss_pred CCCHHHHHHHHHHC
Q ss_conf 88989999999982
Q gi|254780485|r 307 NPSYNKDTILFNRL 320 (328)
Q Consensus 307 g~~~~~~~~~i~~~ 320 (328)
-.++++..++.+++
T Consensus 264 ql~~~~f~~l~~~~ 277 (286)
T COG2876 264 QLTPEEFEELVKEL 277 (286)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 17999999999999
No 209
>PRK13119 consensus
Probab=79.82 E-value=4.6 Score=20.06 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCC-C---------------CCHHHHHHHHHHHCCCCC---CEEEE---C-CC
Q ss_conf 857999999999964983899730368887-4---------------428999998876213688---32410---2-56
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPK-E---------------RDLSIIVDMIKGVKSLGL---ETCMT---L-GM 145 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~---------------~~~~~~~e~i~~i~~~~~---~i~~~---~-g~ 145 (328)
+.|.-++.++.+.+.|+.-+-++.-.-+|. + -.++.++++++.+++.+. .+.++ + ..
T Consensus 27 ~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlMtY~N~i~~ 106 (261)
T PRK13119 27 DIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRETDTQTPVVLMGYLNPVHK 106 (261)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHH
T ss_conf 98999999999996699999978988886665899999999999779978899999998651489989899840378988
Q ss_pred C-CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 9-999999874157606975134377773205888898999999999998798557707866898999999999999740
Q gi|254780485|r 146 L-SFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 146 ~-~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
. -+.-++.++++|++.+.+ |.-.+++.-+..+.+++.|+.. +.+=---|.++|+..+.....
T Consensus 107 yG~e~F~~~~~~~GvdGvIi-------------pDLP~ee~~~~~~~~~~~gl~~---I~lvaPtt~~~Ri~~i~~~a~- 169 (261)
T PRK13119 107 MGYREFAQEAAKAGVDGVLT-------------VDSPVETIDPLYRELKDNGVDC---IFLIAPTTTEDRIKTIAELAG- 169 (261)
T ss_pred HHHHHHHHHHHHCCCCEEEE-------------CCCCHHHHHHHHHHHHHCCCCE---EEEECCCCCHHHHHHHHHHCC-
T ss_conf 62999999999759857983-------------6899788799999999759976---443079998999999997289-
Q ss_pred CCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE-
Q ss_conf 8888602054112048741244568798999999999999686872142311565165689999980998899778665-
Q gi|254780485|r 225 STPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL- 303 (328)
Q Consensus 225 ~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~- 303 (328)
.++- .+...|+.- .......+..+.+.-.|=.. .+++..|-.--.++ +-..+..+||++++|..++
T Consensus 170 ----gFiY---~vs~~GvTG--~~~~~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e-~v~~~~~~aDGvIVGSaiV~ 236 (261)
T PRK13119 170 ----GFVY---YVSLKGVTG--AASLDTDEVSRKIEYLHQYI---DIPIGVGFGISNAE-SARKIGRVADAVIVGSRIVK 236 (261)
T ss_pred ----CEEE---EEECCCCCC--CCCCCHHHHHHHHHHHHHCC---CCCEEEEECCCCHH-HHHHHHCCCCEEEECHHHHH
T ss_conf ----8199---973666668--77555488999999998636---99879983659999-99998734999998289999
Q ss_pred ---CCCCCCHHHHHHHHHH
Q ss_conf ---1588898999999998
Q gi|254780485|r 304 ---TAKNPSYNKDTILFNR 319 (328)
Q Consensus 304 ---t~~g~~~~~~~~~i~~ 319 (328)
..++.......+++++
T Consensus 237 ~i~~~~~~~~~~v~~~vk~ 255 (261)
T PRK13119 237 EIENNAGNEAAAVGALVKE 255 (261)
T ss_pred HHHHCCCCHHHHHHHHHHH
T ss_conf 9986688768999999999
No 210
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=79.46 E-value=4.8 Score=19.99 Aligned_cols=200 Identities=15% Similarity=0.230 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC--H----HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 6857999999999964983899730368887442--8----99999887621-368832410256999999987415760
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERD--L----SIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~--~----~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
-|.|++++.|+..++.|++-+ -+|-..|..++ | +.=+++++.++ +.++.+... ..+.+++....+. +|
T Consensus 112 Es~eq~~~~A~~vk~~Ga~~l--RgGa~KPRTsPysFqGlGeeGL~~L~~ak~e~GLpvvTE--V~~~~~ve~v~~~-~D 186 (352)
T PRK13396 112 ENEEMIVETAKRVKAAGAKFL--RGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITE--VMDAADLDKIAEV-AD 186 (352)
T ss_pred CCHHHHHHHHHHHHHCCCCEE--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHH-CC
T ss_conf 899999999999998399878--265024789985435870879999999999869972688--6799999999865-88
Q ss_pred EEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEE
Q ss_conf 697513437777320588889899999999999879855770786--689899999999999974088886020541120
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GLGEMIDDRIDMLLTLANLSTPPESIPINLLIP 238 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p 238 (328)
.+-+.--+. .. .+.++.+.+.+.++ ++ |+.-|.+|.+.-..++..-+- .+-+-+
T Consensus 187 ilQIGARn~----------qN----f~LL~~~g~t~kPV----llKrg~~~ti~ewl~AaEyi~~~Gn-~~viLc----- 242 (352)
T PRK13396 187 VIQVGARNM----------QN----FSLLKKVGAQDKPV----LLKRGMSATIDEWLMAAEYILAAGN-PNVILC----- 242 (352)
T ss_pred EEEECCHHH----------CC----HHHHHHHHCCCCEE----EECCCCCCCHHHHHHHHHHHHHCCC-CCEEEE-----
T ss_conf 899892540----------59----99999985469807----9737888999999869999997699-858999-----
Q ss_pred CCCC-CCCCC-CCCCHHHHHHHHHHHHHH--CCCCC-C-EEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE----CCCC-
Q ss_conf 4874-12445-687989999999999996--86872-1-42311565165689999980998899778665----1588-
Q gi|254780485|r 239 IPGS-KFEEN-KKVDPIEHVRIISVARIL--MPKSR-L-RLAAGRAMMSDELQALCFFSGANSIFVGDTLL----TAKN- 307 (328)
Q Consensus 239 ~~gt-~l~~~-~~~~~~e~lr~iAi~RL~--lP~~~-i-~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~----t~~g- 307 (328)
.-|. .++.. ..-+. +++.+.+.|-+ +|=.. . +++ |+-.+-+.+.+.++.+|||++|++-.-- -++|
T Consensus 243 ERGirtfe~~~~Rntl--Dl~aip~~k~~thlPVi~DPSH~~-G~r~~V~~la~AAva~GaDGL~iEvHp~P~~AlSDg~ 319 (352)
T PRK13396 243 ERGIRTFDRQYTRNTL--DLSVIPVLRSLTHLPIMIDPSHGT-GKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGP 319 (352)
T ss_pred ECCCCCCCCCCCCCCC--CHHHHHHHHHCCCCCEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 4897756676546775--578879997489998897898645-7872799999999983998899984688011578752
Q ss_pred --CCHHHHHHHHHH
Q ss_conf --898999999998
Q gi|254780485|r 308 --PSYNKDTILFNR 319 (328)
Q Consensus 308 --~~~~~~~~~i~~ 319 (328)
-++++..+|+++
T Consensus 320 Q~l~p~~f~~l~~~ 333 (352)
T PRK13396 320 QSLTPERFDRLMQE 333 (352)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 35899999999999
No 211
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=79.20 E-value=4.9 Score=19.94 Aligned_cols=197 Identities=15% Similarity=0.173 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--....... ..-.+.++.+ ++.++.+.+.-|..+.++.+++.++|++.+.++-..
T Consensus 28 dP~~~a~~~~~~gadelhivDld~a~~g~--~~n~~~i~~i~~~~~~pi~vGGGIrs~~~~~~~l~~GadkVvigs~~~~ 105 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR--ETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 99999999998699999997067320377--0079999999986798689985066479999999779978998984423
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CC-----------CEEEECCC---CCHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 777732058888989999999999987985-57-----------70786689---8999999999999740888860205
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VC-----------CGGILGLG---EMIDDRIDMLLTLANLSTPPESIPI 233 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~-----------sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v~~ 233 (328)
.|.+..++ +.+.|=+ +. -+.++-.+ .+..+..+++..+.+++. ..+-+
T Consensus 106 n~~~~~~~---------------~~~~Gsq~Iv~siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~G~--geil~ 168 (243)
T cd04731 106 NPELIREI---------------AKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGA--GEILL 168 (243)
T ss_pred CCCHHHHH---------------HHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEEE
T ss_conf 77143578---------------87569930999999765378962898469844126789999999984698--78999
Q ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHH
Q ss_conf 41120487412445687989999999999996868721423115651656899999809988997786651588898999
Q gi|254780485|r 234 NLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKD 313 (328)
Q Consensus 234 ~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~ 313 (328)
.-+-..|| +.+ + ..+.++-++- .. +..+.+++|- +-..+.....-..|++++++|.-+ .-+.-+.++.
T Consensus 169 -tdI~~DGt-~~G---~-d~~l~~~i~~-~~---~~piI~sGGi-~~~~di~~~l~~~~~~gv~~g~~~-~~~~~~l~~~ 236 (243)
T cd04731 169 -TSMDRDGT-KKG---Y-DLELIRAVSS-AV---NIPVIASGGA-GKPEHFVEAFEEGGADAALAASIF-HFGEYTIAEL 236 (243)
T ss_pred -EEECCCCC-CCC---C-CHHHHHHHHH-HC---CCCEEEECCC-CCHHHHHHHHHHCCCEEEEEHHHH-HCCCCCHHHH
T ss_conf -87257685-665---7-9999999998-68---9999998899-999999999987898299882276-7699899999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|254780485|r 314 TILFNR 319 (328)
Q Consensus 314 ~~~i~~ 319 (328)
.+.+++
T Consensus 237 k~~L~~ 242 (243)
T cd04731 237 KEYLAE 242 (243)
T ss_pred HHHHHH
T ss_conf 999861
No 212
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.09 E-value=4.9 Score=19.92 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=103.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
.+..+.|+....++.+.+.|++-+-+.. +.+. -.+.++.+++..+.+.+-+|. ++.+++++..++|++.+.
T Consensus 21 lr~~~~~~a~~~~~al~~gGi~~iEITl--rt~~------a~~~I~~l~~~~p~~~vGaGTVl~~e~~~~a~~aGA~FiV 92 (212)
T PRK06015 21 LLIDDVEHAVPLARALARGGLPAIEITL--RTPA------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV 92 (212)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEC--CCCC------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 9779999999999999987998899968--9951------9999999998699967954211569999999984998998
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+| ..+ .++++.+++.|++.-.|.+ |+-|...-+ +.+. ..+- |+|..
T Consensus 93 -----SP--------~~~----~~v~~~a~~~~i~~iPGv~-----TpsEi~~A~----~~G~--~~vK---lFPA~--- 138 (212)
T PRK06015 93 -----SP--------GTT----QELLAAANDSDVPLLPGAI-----TPSEVMALR----EEGY--TVLK---FFPAE--- 138 (212)
T ss_pred -----CC--------CCC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECCCC---
T ss_conf -----58--------999----9999999983997737869-----999999999----8799--9899---78430---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCC----CCCHHHHHHHHHH
Q ss_conf 244568798999999999999686872142311565165689999980998899778665158----8898999999998
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAK----NPSYNKDTILFNR 319 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~----g~~~~~~~~~i~~ 319 (328)
....-.++|-+ +=-+|+..+.-++| +..+....-|.+| |....|+..+... ....+++.+..++
T Consensus 139 -----~~gG~~~lkal---~~p~p~~~~~ptGG---V~~~N~~~yl~~~-~v~~vgGs~l~~~~~i~~~dw~~I~~~a~e 206 (212)
T PRK06015 139 -----QAGGAAFLKAL---SSPLAGTFFCPTGG---ISLKNARDYLSLP-NVVCVGGSWVAPKELVAAGDWAAITKLAAE 206 (212)
T ss_pred -----CCCCHHHHHHH---HCCCCCCCEEECCC---CCHHHHHHHHCCC-CEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf -----01689999998---57799998886289---8988899998089-819998835389999971899999999999
No 213
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=79.03 E-value=4.9 Score=19.90 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC
Q ss_conf 79999999999649838997303--6888744289999988762136883241025699999998741576069751343
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAA--WREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT 168 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~--~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let 168 (328)
+...+.|+.-.+.|++.+|++-- -........+.+.++++ .....+.+.-|..+.+..+.|.++|++++.+.--.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~---~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILE---ATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCE
T ss_conf 998999999998099589886266321587554999999998---57997784087678999999998799889980312
Q ss_pred --CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE--EC--CCCCHH-----HHHHHHHHHHHCCCCCCEEECCCEE
Q ss_conf --777732058888989999999999987985577078--66--898999-----9999999997408888602054112
Q gi|254780485|r 169 --SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGI--LG--LGEMID-----DRIDMLLTLANLSTPPESIPINLLI 237 (328)
Q Consensus 169 --~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l--~G--~gEt~e-----eri~~l~~lr~l~~~~~~v~~~~~~ 237 (328)
.|++.. +.+++.|-++-.+.= -| ..+.|. +..+.+..+.+.+. ..|- .-=+
T Consensus 108 v~~p~~v~---------------~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~--~~ii-~TdI 169 (241)
T COG0106 108 VKNPDLVK---------------ELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGL--AHIL-YTDI 169 (241)
T ss_pred ECCHHHHH---------------HHHHHCCCCEEEEEECCCCCCCCCCCHHCCCCCHHHHHHHHHHCCC--CEEE-EEEC
T ss_conf 16999999---------------9999859828999971488532046101256789999999985787--7699-9851
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHH-CCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 048741244568798999999999999686872142311565165689999980-9988997786651588898999999
Q gi|254780485|r 238 PIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFS-GANSIFVGDTLLTAKNPSYNKDTIL 316 (328)
Q Consensus 238 p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~-GaN~~~~g~~~~t~~g~~~~~~~~~ 316 (328)
...|| |.+ ++.+-+.+..... +..+..|+| .+--.|...+ -.. |+.+.++|--+ -.+.-+.++..+.
T Consensus 170 ~~DGt-l~G---~n~~l~~~l~~~~-----~ipviaSGG-v~s~~Di~~l-~~~~G~~GvIvG~AL-y~g~~~l~ea~~~ 237 (241)
T COG0106 170 SRDGT-LSG---PNVDLVKELAEAV-----DIPVIASGG-VSSLDDIKAL-KELSGVEGVIVGRAL-YEGKFTLEEALAC 237 (241)
T ss_pred CCCCC-CCC---CCHHHHHHHHHHH-----CCCEEEECC-CCCHHHHHHH-HHCCCCCEEEEEHHH-HCCCCCHHHHHHH
T ss_conf 44664-577---7879999999982-----767898668-6879999999-855797289986689-6489789999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780485|r 317 FNR 319 (328)
Q Consensus 317 i~~ 319 (328)
++.
T Consensus 238 ~~~ 240 (241)
T COG0106 238 VRN 240 (241)
T ss_pred HHC
T ss_conf 862
No 214
>PRK06857 consensus
Probab=78.19 E-value=5.2 Score=19.74 Aligned_cols=181 Identities=14% Similarity=0.133 Sum_probs=104.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
.+..+.|+....++.+.+.|++-+-+.... +. -.+.++.+++..+.+.+-+|. ++.++++...++|++.+.
T Consensus 18 ir~~~~~~a~~~~~al~~gGi~~iEiTlrt--~~------a~~~I~~l~~~~p~~~vGaGTV~~~e~~~~a~~aGA~FiV 89 (209)
T PRK06857 18 IAIDDAEDILPLAKVLAENGLPVAEITFRS--AA------AAEAIRLLREAYPDMLIGAGTVLTPEQVDAAKEAGADFIV 89 (209)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCC--CC------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 975999999999999998799889995899--32------9999999997589948999937679999999983999999
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+| ..+ -++++.+++.|++.-.|.+ |+-|...-+ +.+. ..+- |+|..
T Consensus 90 -----SP--------~~~----~~v~~~a~~~~i~~iPGv~-----TpsEi~~A~----~~G~--~~vK---lFPA~--- 135 (209)
T PRK06857 90 -----SP--------GFN----PNTVKYCQQLNIPIVPGVN-----NPSLVEQAL----EMGL--TTLK---FFPAE--- 135 (209)
T ss_pred -----CC--------CCC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECCCC---
T ss_conf -----08--------999----9999999974996547879-----999999999----8799--9899---78662---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECC-EEECC---CCCCHHHHHHHHHH
Q ss_conf 244568798999999999999686872142311565165689999980998899778-66515---88898999999998
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD-TLLTA---KNPSYNKDTILFNR 319 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~-~~~t~---~g~~~~~~~~~i~~ 319 (328)
...+..|+|- .|=-+|+..+.-++| +..+...--|.+|+ ....|+ .+... .....+++.+..++
T Consensus 136 -----~~gG~~~lka---l~~p~p~~~~~ptGG---V~~~N~~~yl~~~~-v~~~gGS~l~~~~~i~~~d~~~I~~~a~~ 203 (209)
T PRK06857 136 -----ASGGVNMLKA---LLAPYPNLQIMPTGG---INPSNIKDYLAIPN-VVACGGTWMVPKKLIDNGNWDEIGRLVRE 203 (209)
T ss_pred -----CCCCHHHHHH---HHCCCCCCEEEECCC---CCHHHHHHHHCCCC-EEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf -----1266999999---865389980996489---88878999985998-89998936589999972899999999999
No 215
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=77.46 E-value=5.4 Score=19.60 Aligned_cols=196 Identities=15% Similarity=0.195 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH-HHHCCCCCEEEE
Q ss_conf 068579999999999649838997303688-874428999998876213688324102569999999-874157606975
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWRE-PKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQ-ILSKAGLDYYNH 164 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~-~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~-~Lk~aG~~~~~~ 164 (328)
--+.+.+++.|++-.+.|+.-+-+-.+... +....+.+++..+... ....+++ ...+.+.++ .|+...-. -.+
T Consensus 22 ~~d~~~i~~~A~~Q~~~GA~~LDVN~g~~~~de~~~M~~~v~~vq~~--~~~Pl~i--DS~~~~~iEaaLk~~~Gr-~iI 96 (252)
T cd00740 22 AEDYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATE--PTVPLML--DSTNWEVIEAGLKCCQGK-CVV 96 (252)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC--CCCCEEE--ECCCHHHHHHHHHHCCCC-EEE
T ss_conf 57989999999999984998899528964536599999999998547--8998576--179899999999976998-677
Q ss_pred ECCCCHHHHHCCCCCCCHHHHH-HHHHHHHHCCCCCCCEEE--ECCCCCHHHHHHHHHHHHHCC-----CCCCEEECCCE
Q ss_conf 1343777732058888989999-999999987985577078--668989999999999997408-----88860205411
Q gi|254780485|r 165 NIDTSERFYPHVTTTHTFEDRL-QTLENVRKSGIKVCCGGI--LGLGEMIDDRIDMLLTLANLS-----TPPESIPINLL 236 (328)
Q Consensus 165 ~let~~~~~~~~~~~~~~~~~l-~~~~~a~~~G~~~~sg~l--~G~gEt~eeri~~l~~lr~l~-----~~~~~v~~~~~ 236 (328)
| + + .-...++++ +.+..|++.|-.+-+-.+ =|+-+|.++|++...++-+.- ..++-+.+=++
T Consensus 97 N--S-------i-s~e~g~er~~~i~pLakkyga~vI~L~~de~Gip~t~e~R~~ia~~i~~~~~~~~Gi~~edI~~DpL 166 (252)
T cd00740 97 N--S-------I-NLEDGEERFLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAERAYEALTEFVGFPPEDIIFDPL 166 (252)
T ss_pred E--C-------C-CCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEECC
T ss_conf 4--1-------6-3445488999999999870998999952899998999999999999999999856998899788663
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHC----------HHHHHHHHHHCCCEEEE
Q ss_conf 204874124456879899999999999968687214231156516----------56899999809988997
Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMS----------DELQALCFFSGANSIFV 298 (328)
Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~----------~~~~~~~L~~GaN~~~~ 298 (328)
+..-+|-.+. ......+++++|...|=-+|++.+...-|-.+-| .-+-.+++.+|-|+-++
T Consensus 167 v~pi~tg~e~-~~~~~~~tleaI~~ik~~~P~~~t~~GlSNiSFGl~~p~R~~lNs~FL~~a~~~GLd~AI~ 237 (252)
T cd00740 167 ILPIATGIEE-HRPYALETIDAIRMIKERLPAVKISLGVSNVSFGFNPAAREALNSVFLYEAIKAGLDMAIV 237 (252)
T ss_pred HHHHHCCCHH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEC
T ss_conf 5776457467-8889999999999999878998377885221178882689999999999999859973003
No 216
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=76.54 E-value=5.8 Score=19.44 Aligned_cols=202 Identities=18% Similarity=0.266 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC--H----HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCC
Q ss_conf 6857999999999964983899730368887442--8----99999887621-368832410256999999987415760
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERD--L----SIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLD 160 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~--~----~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328)
-|.|++++.|+..++.|++-+. ++.+ .|..++ | +.=+++++.++ +.++.+... .++.+++..+.+. +|
T Consensus 104 Es~eq~~~~A~~vk~~ga~~lR-gGa~-KPRTsPysFqGlg~eGL~~L~~~~~e~GlpvvTE--V~~~~~ve~v~~~-vD 178 (335)
T PRK08673 104 ESEEQILEIARAVKEAGAQILR-GGAF-KPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTE--VMDPRDVELVAEY-AD 178 (335)
T ss_pred CCHHHHHHHHHHHHHCCCCEEC-CCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHH-CC
T ss_conf 8799999999999977996880-6665-7899985414551669999999999869952899--6689999999964-97
Q ss_pred EEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEE
Q ss_conf 697513437777320588889899999999999879855770786--689899999999999974088886020541120
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GLGEMIDDRIDMLLTLANLSTPPESIPINLLIP 238 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p 238 (328)
.+-+.--... . .+.++.+.+.+.++ ++ |+.-|.+|.+.-..++..-+- .+-+-+
T Consensus 179 ilQIGARnmq----------N----~~LL~evg~~~kPV----llKrg~~~ti~ewl~AaEyi~~~Gn-~~ViLc----- 234 (335)
T PRK08673 179 ILQIGARNMQ----------N----FDLLKEVGKTNKPV----LLKRGMSATIEEWLMAAEYILAEGN-PNVILC----- 234 (335)
T ss_pred EEEECHHHHC----------C----HHHHHHHHHHCCEE----EECCCCCCCHHHHHHHHHHHHHCCC-CCEEEE-----
T ss_conf 9998915505----------9----99999999729948----9737887889999878999997699-867999-----
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHHH--CCCC-CCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE----CCCC---
Q ss_conf 4874-12445687989999999999996--8687-2142311565165689999980998899778665----1588---
Q gi|254780485|r 239 IPGS-KFEENKKVDPIEHVRIISVARIL--MPKS-RLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL----TAKN--- 307 (328)
Q Consensus 239 ~~gt-~l~~~~~~~~~e~lr~iAi~RL~--lP~~-~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~----t~~g--- 307 (328)
.-|. .++....-+. +++.+.+.|=. +|=. .+.=++|+-.+-+.+.+.++.+|||++|++-.-- -++|
T Consensus 235 ERGirtfe~~tRntl--Dl~aip~~k~~thlPVI~DPSH~~G~r~~V~~la~aAiAaGaDGL~iEvHp~P~~AlSDg~Q~ 312 (335)
T PRK08673 235 ERGIRTFETATRNTL--DLSAVPVLKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQS 312 (335)
T ss_pred ECCCCCCCCCCCCCC--CHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCC
T ss_conf 346545676667877--878889997188988898882203633228999999998099889999568812146874236
Q ss_pred CCHHHHHHHHHHC
Q ss_conf 8989999999982
Q gi|254780485|r 308 PSYNKDTILFNRL 320 (328)
Q Consensus 308 ~~~~~~~~~i~~~ 320 (328)
-++++..+|++++
T Consensus 313 l~p~~f~~l~~~l 325 (335)
T PRK08673 313 LTPEEFEELMKKL 325 (335)
T ss_pred CCHHHHHHHHHHH
T ss_conf 8999999999999
No 217
>PRK13117 consensus
Probab=76.32 E-value=5.8 Score=19.40 Aligned_cols=185 Identities=14% Similarity=0.059 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------------CCHHHHHHHHHHHCCCCC---CEEEE---C-C
Q ss_conf 8579999999999649838997303688874-----------------428999998876213688---32410---2-5
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKE-----------------RDLSIIVDMIKGVKSLGL---ETCMT---L-G 144 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~-----------------~~~~~~~e~i~~i~~~~~---~i~~~---~-g 144 (328)
+.|.-++.++.+.+.|+.-+-++ -...++. -.++.+.++++.+++... .+.+. + .
T Consensus 29 ~~~~t~~~~~~l~~~GaDiiElG-iPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlM~Y~N~i~ 107 (268)
T PRK13117 29 SPELSLKIIDTLIEAGADALELG-IPFSDPLADGPTIQNANLRALAAGVTPAQCFELLAKIRAKYPTIPIGLLLYANLVF 107 (268)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHH
T ss_conf 97999999999996699989978-99888565579999999999845996999999998850047898779973262898
Q ss_pred CC-CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 69-99999987415760697513437777320588889899999999999879855770786689899999999999974
Q gi|254780485|r 145 ML-SFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLAN 223 (328)
Q Consensus 145 ~~-~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~ 223 (328)
.. .+.-+++.+++|++.+++ |.-.+++--+..+.+++.|+..- .++- --|.++|+..+.....
T Consensus 108 ~~G~e~F~~~~~~aGvdGvIi-------------pDLP~eE~~~~~~~~~~~gl~~I--~lv~-Ptt~~~Ri~~i~~~a~ 171 (268)
T PRK13117 108 ANGIDNFYARCAEAGVDSVLI-------------ADVPVEESAPFRQAAKKHGIAPI--FICP-PNADDDTLRQIASLGR 171 (268)
T ss_pred HCCHHHHHHHHHHCCCCEEEE-------------CCCCHHHHHHHHHHHHHCCCCEE--EEEC-CCCCHHHHHHHHHHCC
T ss_conf 717999999999769877985-------------79997885899999986798379--9847-9999999999997479
Q ss_pred CCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 08888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 224 LSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 224 l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
.++ ..+...|+.-.. ...+.+....+.-.|-+- .+++..|-.--.++..+..+..|||++++|..++
T Consensus 172 -----GFi---Y~vs~~GvTG~~--~~~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSaiV 238 (268)
T PRK13117 172 -----GYT---YLLSRAGVTGAE--NKAAAPLNHLVEKLKEYN---APPPLQGFGISEPEQVKAAIKAGAAGAISGSAIV 238 (268)
T ss_pred -----CEE---EEEECCCCCCCC--CCCCHHHHHHHHHHHHCC---CCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf -----859---998367778898--666277999999999647---9986998378999999999863899899878999
No 218
>PRK08904 consensus
Probab=76.17 E-value=5.9 Score=19.37 Aligned_cols=182 Identities=18% Similarity=0.155 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
.+..+.|+.+..++.+.+.|++-+-+.. +.+ .-.+.++.+++..+.+.+-+|. ++.+++++..++|++.+.
T Consensus 16 ir~~~~~~a~~~a~al~~~Gi~~iEiTl--rtp------~a~~~i~~l~~~~p~~~vGaGTVl~~e~~~~a~~aGA~FiV 87 (207)
T PRK08904 16 MAIDDLSTAVDLSRALVEGGIPTLEITL--RTP------VGLDAIRLIAKEVPNAIVGAGTVTNPEQLKAVEDAGAVFAI 87 (207)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEC--CCC------HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 9769999999999999987998899957--991------39999999998689876855313689999999984999998
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+| ..+ -++++.+++.|++.-.|.+ |+-|...-+ +.+. ..+- |+| ..
T Consensus 88 -----SP--------~~~----~~v~~~a~~~~i~~iPGv~-----TpsEi~~A~----~~G~--~~vK---~FP--A~- 133 (207)
T PRK08904 88 -----SP--------GLH----ESLAKAGHNSGIPLIPGVA-----TPGEIQLAL----EHGI--DTLK---LFP--AE- 133 (207)
T ss_pred -----CC--------CCC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECC--CH-
T ss_conf -----48--------998----9999999983997657869-----999999999----8799--9899---776--22-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECC----CCCCHHHHHHHHHH
Q ss_conf 24456879899999999999968687214231156516568999998099889977866515----88898999999998
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTA----KNPSYNKDTILFNR 319 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~----~g~~~~~~~~~i~~ 319 (328)
......++|.+ +=.+|+..+.-++| + ..+....-|.. .|....|+..+.. .....+++.+..++
T Consensus 134 -----~~GG~~~lkal---~~pfp~i~~~pTGG-V--~~~N~~~yl~~-~~v~~vgGS~l~~~~~i~~~d~~~I~~~a~~ 201 (207)
T PRK08904 134 -----VVGGKAMLKAL---YGPYADVRFCPTGG-I--SLATAPEYLAL-PNVLCVGGSWLTPKEAVKNKDWDTITRLAKE 201 (207)
T ss_pred -----HCCCHHHHHHH---HCCCCCCEEEECCC-C--CHHHHHHHHHC-CCEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf -----20889999987---46599980886589-8--98789999818-9849998814389999974899999999999
Q ss_pred C
Q ss_conf 2
Q gi|254780485|r 320 L 320 (328)
Q Consensus 320 ~ 320 (328)
+
T Consensus 202 a 202 (207)
T PRK08904 202 A 202 (207)
T ss_pred H
T ss_conf 9
No 219
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=76.08 E-value=5.9 Score=19.36 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=93.6
Q ss_pred CCCCCCCCCCCCCCCC-----CCCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCC------------CCCCCCH-----
Q ss_conf 3423212433547775-----64100068579999999999649838997-30368------------8874428-----
Q gi|254780485|r 66 PENCGYCNQSVHNKSK-----LKASKLINVDQVLKEAKNAKENGATRYCM-GAAWR------------EPKERDL----- 122 (328)
Q Consensus 66 ~~~C~fCaf~~~~~~~-----~~~~~~~~~Eei~~~a~~~~~~G~~~~~l-~~~~~------------~~~~~~~----- 122 (328)
..+++.|+....-++. ..-....+.|+=+++++.+.+.|+-.+.- .+|+. +.+...+
T Consensus 48 ~~~~~p~~IG~glrtKVNaNIGtS~~~~d~~~E~eK~~~A~~~GADtiMDLStGGdl~~iR~~il~~s~vpvGTVPiYqa 127 (433)
T PRK13352 48 HRNLKPVGIGEGLRTKVNANIGTSSDISDIEEELEKAKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQA 127 (433)
T ss_pred CCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 89887048656864689711168988798899999999999829985786577746699999999649988678019999
Q ss_pred ----------------HHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHCCC----CCEE---------EEECCCCH--
Q ss_conf ----------------999998876213688-324102569999999874157----6069---------75134377--
Q gi|254780485|r 123 ----------------SIIVDMIKGVKSLGL-ETCMTLGMLSFEQAQILSKAG----LDYY---------NHNIDTSE-- 170 (328)
Q Consensus 123 ----------------~~~~e~i~~i~~~~~-~i~~~~g~~~~~~~~~Lk~aG----~~~~---------~~~let~~-- 170 (328)
+.+++.++.--+.++ .+.+++|. +.+.+.++++.| +-+- .++-.-+|
T Consensus 128 ~~~~~~~~~~~~~mt~d~~f~~ie~qa~~GVDfmTiH~Gi-~~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly 206 (433)
T PRK13352 128 AIEAARKYGSIVDMTEDDLFDVIEKQAKDGVDFMTIHCGV-TRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLY 206 (433)
T ss_pred HHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCEEEECCCC-HHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCHH
T ss_conf 9999880599555999999999999997189879962022-399999998458703513157299999999747758346
Q ss_pred HHH-----------------HCCCCCC-----C---HHHHH---HHHHHHHHCCCCCCCEEEECCCCCHHHHH-HHHHHH
Q ss_conf 773-----------------2058888-----9---89999---99999998798557707866898999999-999999
Q gi|254780485|r 171 RFY-----------------PHVTTTH-----T---FEDRL---QTLENVRKSGIKVCCGGILGLGEMIDDRI-DMLLTL 221 (328)
Q Consensus 171 ~~~-----------------~~~~~~~-----~---~~~~l---~~~~~a~~~G~~~~sg~l~G~gEt~eeri-~~l~~l 221 (328)
+.| .-.+|+. + +.+.+ +..++|++.|.++ |+=|.|.-+-+-+ ..+...
T Consensus 207 e~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~EL~~lgeL~~rA~e~gVQv---MvEGPGHvPl~~I~~nv~l~ 283 (433)
T PRK13352 207 EHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELTKRAREAGVQV---MVEGPGHVPLDQIEANVKLQ 283 (433)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEECCCCCCHHHHHHHHHHH
T ss_conf 609999999997493687147778875466773889999999999999999839988---98799987789999999999
Q ss_pred HHCCCCCCEEECCCEEECC-----------------------------CCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 7408888602054112048-----------------------------74124456879899999999999968
Q gi|254780485|r 222 ANLSTPPESIPINLLIPIP-----------------------------GSKFEENKKVDPIEHVRIISVARILM 266 (328)
Q Consensus 222 r~l~~~~~~v~~~~~~p~~-----------------------------gt~l~~~~~~~~~e~lr~iAi~RL~l 266 (328)
+++-. ..|+..|-|.. =||-++..-|+.++.-.=+-.+||.-
T Consensus 284 K~lc~---~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAdfLCYVTPaEHL~LP~~eDVreGviA~kIAA 354 (433)
T PRK13352 284 KELCH---GAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADFLCYVTPAEHLGLPNVEDVREGVIASKIAA 354 (433)
T ss_pred HHHHC---CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99617---998000286100367772088899999999864776375058088548999899999999999999
No 220
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=75.98 E-value=6 Score=19.34 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 9899999999999879855770
Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKVCCG 202 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~G~~~~sg 202 (328)
++.++....+.|++.|++++.+
T Consensus 171 ~~~~f~~~f~~a~~~gl~~t~H 192 (325)
T cd01320 171 PPEKFVRAFQRAREAGLRLTAH 192 (325)
T ss_pred CHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8689999999999859845664
No 221
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=75.28 E-value=6.2 Score=19.22 Aligned_cols=177 Identities=16% Similarity=0.174 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHCCCCCCEEEECCCCCH-----HHHHHHHCCCCCEEE-EECCCCH------HHHH----CC--CCCCCH
Q ss_conf 2899999887621368832410256999-----999987415760697-5134377------7732----05--888898
Q gi|254780485|r 121 DLSIIVDMIKGVKSLGLETCMTLGMLSF-----EQAQILSKAGLDYYN-HNIDTSE------RFYP----HV--TTTHTF 182 (328)
Q Consensus 121 ~~~~~~e~i~~i~~~~~~i~~~~g~~~~-----~~~~~Lk~aG~~~~~-~~let~~------~~~~----~~--~~~~~~ 182 (328)
+++.+..+++.+.+.+ ++.+.+|+.-- +..+++|+.=.+... ..+.|.. +... .+ .-+...
T Consensus 183 ~~~~~~~~~~~~p~~d-~~IIEaGTPLIK~~G~~aV~~iRe~fPd~~IvADlKTmDaG~lEa~mAa~AGADivtVlG~A~ 261 (392)
T PRK13307 183 DLEEVERVLSELPQSD-HIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAP 261 (392)
T ss_pred CHHHHHHHHHHCCCCC-EEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8899999997188656-289990858889867899999998789988998542035426888888875998899956798
Q ss_pred -HHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -9999999999987985577078668989999999999997408888602054112048741244568798999999999
Q gi|254780485|r 183 -EDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISV 261 (328)
Q Consensus 183 -~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi 261 (328)
..--++++.|++.|..+-.-| ++. +.+.+|++-| +++. +-+. + |-|...+... .+..+.+++...
T Consensus 262 ~sTI~~aikeA~k~G~~v~vDl-InV-~dpv~ra~eL----klg~--DiI~---l--H~giD~Q~~~-~~~~~l~~i~~~ 327 (392)
T PRK13307 262 ISTIEKAIHEAQKTGIYSILDM-LNV-EDPVKLLESL----KVKP--DVVE---L--HRGIDEEGTE-HAWGNIPEIKKA 327 (392)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCC-CCHHHHHHHH----CCCC--CEEE---E--EECCCHHHCC-CCHHHHHHHHHH
T ss_conf 7899999999997097999983-478-8889999984----4469--8899---9--8541264036-874569999974
Q ss_pred HHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHC
Q ss_conf 99968687214231156516568999998099889977866515888989999999982
Q gi|254780485|r 262 ARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRL 320 (328)
Q Consensus 262 ~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~ 320 (328)
. .+..+.+++| +..+....++.+||+-+++|.+++.+.. ..+.-++.++++
T Consensus 328 ~----~~~~VAVAGG---I~~et~~~~~~~gadIvIVG~aIT~S~D-p~~AAreil~~~ 378 (392)
T PRK13307 328 A----GKILVAVAGG---VRVEKVEEALKAGADILVVGRAITKSKD-VRRAAEQFLNKL 378 (392)
T ss_pred C----CCEEEEEECC---CCHHHHHHHHHCCCCEEEECCHHCCCCC-HHHHHHHHHHHC
T ss_conf 2----6805999778---8888899998469989998912137899-899999999873
No 222
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=75.27 E-value=6.2 Score=19.22 Aligned_cols=186 Identities=15% Similarity=0.112 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC---------------CHHHHHHHHHHHCCC-C-CCEEEE---C-C-C
Q ss_conf 857999999999964983899730368887-44---------------289999988762136-8-832410---2-5-6
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPK-ER---------------DLSIIVDMIKGVKSL-G-LETCMT---L-G-M 145 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~---------------~~~~~~e~i~~i~~~-~-~~i~~~---~-g-~ 145 (328)
+.|.-++.++.+.+.|+.-+-++-=.-+|. +. .++.+.++++.++.. . +.+.++ + . .
T Consensus 27 ~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~PivlMtY~N~i~~y 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHC
T ss_conf 87899999999997699999978988886665899999999999779877789999999860679988998620688873
Q ss_pred CCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998741576069751343777732058888989999999999987985577078668989999999999997408
Q gi|254780485|r 146 LSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 146 ~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~ 225 (328)
-.+.-+++++++|++.+.+ |.-.+++--+....+++.|+.. +.+=-.-|.++|+..+....+
T Consensus 107 G~e~F~~~~~~~GvdGlIi-------------pDLP~eE~~~~~~~~~~~gl~~---I~lvaPtt~~~Ri~~i~~~a~-- 168 (263)
T CHL00200 107 GINKFIKKISQAGVKGLII-------------PDLPYEESDYLISVCNLYNIEL---ILLIAPTSSKSRIQKIARAAP-- 168 (263)
T ss_pred CHHHHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHCCCCE---EEEECCCCCHHHHHHHHHHCC--
T ss_conf 8899999999849986874-------------7999788899999998558621---666478996999999997289--
Q ss_pred CCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 226 TPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 226 ~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
.++ ..+...|+.-... .-+.+....+...|=.- .+++..|-.--.++.......+|||++++|..++
T Consensus 169 ---GFi---Y~vs~~GvTG~~~--~~~~~l~~~i~~ik~~t---~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSaiV 235 (263)
T CHL00200 169 ---GCI---YLVSTTGVTGLKT--ELDKKLKKLIETIKKMT---NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred ---CCE---EEEECCCCCCCCC--CCHHHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf ---808---9853365568754--45187999999999736---9984873587999999999745999999878999
No 223
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=75.13 E-value=6.3 Score=19.19 Aligned_cols=167 Identities=16% Similarity=0.225 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCC-------CCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEE
Q ss_conf 7999999999964983899730368887-------44289999988762-136883241025699999998741576069
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPK-------ERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYY 162 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~-------~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~ 162 (328)
+..+..++.+-+.|++-+-+ =..... .+.+....+.++.+ ++.+....+| +...-=.+.|+|.+
T Consensus 15 ~~~~~~ve~Al~GGV~~~Ql--R~K~~~~~~~yGE~~~~~~~A~~l~~lc~~y~~~f~vN------D~vdlA~~~~ADGv 86 (210)
T TIGR00693 15 KDLLARVEAALKGGVTLVQL--RDKGSNALQQYGETRERLELAEKLRELCRKYGVPFIVN------DRVDLALALGADGV 86 (210)
T ss_pred HHHHHHHHHHHHCCCEEEEE--EECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEC------CHHHHHHHHCCCEE
T ss_conf 44899999998589629998--40587542125858899999999999998708976882------83999998379877
Q ss_pred EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHH-HHHHCCCCCCEEECCCEEECC
Q ss_conf 751343777732058888989999999999987985577078668-989999999999-997408888602054112048
Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLL-TLANLSTPPESIPINLLIPIP 240 (328)
Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~-~lr~l~~~~~~v~~~~~~p~~ 240 (328)
+++++-.|- ..|+++ .+.++++|. ..+.+|..+-.. .+ .-...| |.+.+++|-+
T Consensus 87 HlGQ~D~p~------------------~~aR~l---~G~~~iiG~S~~~~~e~~~a~~C~~-~~gaDY--~G~Gp~fpT~ 142 (210)
T TIGR00693 87 HLGQDDLPV------------------SEARKL---LGPDKIIGVSTHNLEELAEAAACEL-KEGADY--IGVGPIFPTP 142 (210)
T ss_pred EECCCCCCH------------------HHHHHH---CCCCCEEEEEECCHHHHHHHHHHHH-HCCCCE--EEECCCCCCC
T ss_conf 667888998------------------999985---3899579853379899999998764-078988--8863711588
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEE
Q ss_conf 741244568798999999999999-686872142311565165689999980998899
Q gi|254780485|r 241 GSKFEENKKVDPIEHVRIISVARI-LMPKSRLRLAAGRAMMSDELQALCFFSGANSIF 297 (328)
Q Consensus 241 gt~l~~~~~~~~~e~lr~iAi~RL-~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~ 297 (328)
| -++.+++-.-|+|+-++-.++ =.|-+ -|-+ +..+.-+..+.+||+++-
T Consensus 143 -T-K~~~~~~~g~e~l~~~~~~~~h~~P~V--AIGG----I~~~n~~~v~~~G~~~vA 192 (210)
T TIGR00693 143 -T-KKDAAPPVGLELLREIAATSIHDIPIV--AIGG----ITLENVAEVLAAGADGVA 192 (210)
T ss_pred -C-CCCCCCCCCHHHHHHHHHHCCCCCCEE--EECC----CCHHHHHHHHHCCCCEEE
T ss_conf -7-889877648889999998617887658--8759----887899999972887388
No 224
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR014191 Members of this entry represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR, see IPR012837 from INTERPRO). Members of this entry are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of these proteins as RNR activating proteins is partly from pairing with the candidate RNR and further supported by the finding that upstream of these operons are examples of a conserved regulatory element that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes ..
Probab=74.67 E-value=6.4 Score=19.12 Aligned_cols=95 Identities=20% Similarity=0.364 Sum_probs=55.1
Q ss_pred HHCCCCEEEEEEEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE----EEEEE-CCCCCC
Q ss_conf 862898569998645307868342--32124335477756410006857999999999964983----89973-036888
Q gi|254780485|r 45 KNFEPNHIQLSKLLNIKTGGCPEN--CGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT----RYCMG-AAWREP 117 (328)
Q Consensus 45 ~~~~g~~V~~~~~in~~TN~C~~~--C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~----~~~l~-~~~~~~ 117 (328)
+.+ +|.|++. +|+ || |+.. |+=|= |..... ......++.|.+.+..+.. ..-++ .+|++ .||++.
T Consensus 10 qEv-Pde~~LA--~~~-~G-Cp~~PKC~GCH-S~~lW~-~d~G~~Lt~e~~~~~l~~y-~~~I~RYFPK~Cv~FlGGEPL 81 (165)
T TIGR02826 10 QEV-PDEVSLA--FNI-SG-CPLGPKCKGCH-SPELWH-EDEGTPLTEEALAQLLDKY-RSLITRYFPKVCVLFLGGEPL 81 (165)
T ss_pred EEC-CCCEEEE--EEE-EC-CCCCCCCCCCC-CHHHCC-CCCCCCCCHHHHHHHHHHH-CCCCCHHHHHHEEEECCCCCC
T ss_conf 650-8706787--775-46-78779598888-731113-5679888989999999874-000101210020200478988
Q ss_pred CCCCHHHHHHHHHHHCCC--CCCEEEECCCCC
Q ss_conf 744289999988762136--883241025699
Q gi|254780485|r 118 KERDLSIIVDMIKGVKSL--GLETCMTLGMLS 147 (328)
Q Consensus 118 ~~~~~~~~~e~i~~i~~~--~~~i~~~~g~~~ 147 (328)
.+...+.+.+..+.+|+. ++.++.=.|...
T Consensus 82 APw~~~~l~~Ll~~~k~~~~~L~v~LYTG~~~ 113 (165)
T TIGR02826 82 APWEPEALLSLLKLVKEEHAGLKVCLYTGREH 113 (165)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 73376899999999997538866888508854
No 225
>pfam01964 ThiC ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.
Probab=74.54 E-value=6.5 Score=19.10 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=93.1
Q ss_pred CCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCC------------CCCCCCH---
Q ss_conf 6834232124335477756-----4100068579999999999649838997-30368------------8874428---
Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKL-----KASKLINVDQVLKEAKNAKENGATRYCM-GAAWR------------EPKERDL--- 122 (328)
Q Consensus 64 ~C~~~C~fCaf~~~~~~~~-----~~~~~~~~Eei~~~a~~~~~~G~~~~~l-~~~~~------------~~~~~~~--- 122 (328)
.-..+++.|+.....++.+ .-....+.|+=+++++.+.+.|+-.+.- .+|+. +.+...+
T Consensus 44 ~~h~~~~p~~IG~glrtKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADtvMDLStGgdl~~iR~~il~~s~vpvGTVPiY 123 (421)
T pfam01964 44 INHPELKPMGIGKGLRTKVNANIGTSADISDIDEEVEKAKVAIKYGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIY 123 (421)
T ss_pred CCCCCCCEEEECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 99898871486468645896022689887988999999999998399857765777466999999997399867761499
Q ss_pred ---------------HHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHCCC----CCEE---------EEECCCCH--H
Q ss_conf ---------------999998876213688-324102569999999874157----6069---------75134377--7
Q gi|254780485|r 123 ---------------SIIVDMIKGVKSLGL-ETCMTLGMLSFEQAQILSKAG----LDYY---------NHNIDTSE--R 171 (328)
Q Consensus 123 ---------------~~~~e~i~~i~~~~~-~i~~~~g~~~~~~~~~Lk~aG----~~~~---------~~~let~~--~ 171 (328)
+.+++.++.--+.++ .+.+++|. +.+.+.++++.| +-+- .++-.-+| +
T Consensus 124 qa~~~~~~~~~~mt~d~~~~~ie~qa~~GVDfmTiH~Gi-~~~~~~~~~~~~R~~giVSRGGs~la~WM~~n~~ENPlye 202 (421)
T pfam01964 124 QAAERKGGSVVDMTEDDLFDVIEEQAKDGVDFMTIHAGV-TRETLERLKRSGRLTGIVSRGGSFLAAWMLHNGKENPLYE 202 (421)
T ss_pred HHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCEEEECCCH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCHHH
T ss_conf 999996599454999999999999997288778740001-5999999974587346014662899999997476583466
Q ss_pred HH-----------------HCCCCCC-----C---HHHHH---HHHHHHHHCCCCCCCEEEECCCCCHHHHH-HHHHHHH
Q ss_conf 73-----------------2058888-----9---89999---99999998798557707866898999999-9999997
Q gi|254780485|r 172 FY-----------------PHVTTTH-----T---FEDRL---QTLENVRKSGIKVCCGGILGLGEMIDDRI-DMLLTLA 222 (328)
Q Consensus 172 ~~-----------------~~~~~~~-----~---~~~~l---~~~~~a~~~G~~~~sg~l~G~gEt~eeri-~~l~~lr 222 (328)
.| .-.+|+. + +.+.+ +..++|++.|.++ |+=|.|.-+-+-+ ..+...+
T Consensus 203 ~fD~lleI~~~yDVtlSLGDglRPG~i~Da~D~aQ~~El~~lgeL~~rA~e~gVQv---MVEGPGHvPl~qI~~nv~l~K 279 (421)
T pfam01964 203 HFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELITLGELTKRAWEAGVQV---MIEGPGHVPLNQIEANVKLQK 279 (421)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE---EEECCCCCCHHHHHHHHHHHH
T ss_conf 09999999997492686047779875356871889999999999999999819988---987999777899999999999
Q ss_pred HCCCCCCEEECCCEEECC-----------------------------CCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 408888602054112048-----------------------------74124456879899999999999968
Q gi|254780485|r 223 NLSTPPESIPINLLIPIP-----------------------------GSKFEENKKVDPIEHVRIISVARILM 266 (328)
Q Consensus 223 ~l~~~~~~v~~~~~~p~~-----------------------------gt~l~~~~~~~~~e~lr~iAi~RL~l 266 (328)
+|- ++.|+..|-|.. =||-++..-|+.++.-.=+-.+||.-
T Consensus 280 ~lc---~~APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~GAdfLCYVTPaEHL~LP~~eDVreGviA~kIAA 349 (421)
T pfam01964 280 ELC---HGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADFLCYVTPAEHLGLPNVEDVREGVIAYKIAA 349 (421)
T ss_pred HHH---CCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 861---7998010286100367772088999999999864776375058088548999899999999999999
No 226
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=73.49 E-value=6.9 Score=18.93 Aligned_cols=196 Identities=12% Similarity=0.140 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCH-HHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECC
Q ss_conf 79999999999649838997-303688874428-9999988762-13688324102569999999874157606975134
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCM-GAAWREPKERDL-SIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~-~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328)
-.+.++++.+.+.|+..+++ +.-|+.-+...+ -.+++.+|.. ......+|+-+- -.+..+..+.++|++.+..-.|
T Consensus 12 ~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~ir~~~t~~~~DvHLMv~-~P~~~i~~~~~aGad~I~~H~E 90 (220)
T PRK08883 12 ARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVK-PVDRIIPDFAKAGASMITFHVE 90 (220)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999997699989981778985886566989999999658998757899833-8888899999759988998577
Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC
Q ss_conf 37777320588889899999999999879855770786689899999999999974088886020541120487412445
Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN 247 (328)
Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~ 247 (328)
+.+. -.++++..++.|++. |+-+.. .|+-+.++.+. .+++ .|-+.-. .||- .+.
T Consensus 91 a~~~-------------~~~~i~~Ik~~g~k~--GlalnP-~T~~~~l~~~l--~~~D----~VLvMtV--~PGf--~GQ 144 (220)
T PRK08883 91 ASEH-------------VDRTLQLIKEHGCQA--GVVLNP-ATPLAHLEYIM--DKVD----LILLMSV--NPGF--GGQ 144 (220)
T ss_pred CCCC-------------HHHHHHHHHHCCCCE--EEEECC-CCCHHHHHHHH--HHCC----EEEEEEE--CCCC--CCC
T ss_conf 6549-------------999999999859966--888479-99879999999--7469----7999874--5898--875
Q ss_pred CCCCHHHHHHHHHHHHHHCCC--CCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHH
Q ss_conf 687989999999999996868--72142311565165689999980998899778665158889899999999
Q gi|254780485|r 248 KKVDPIEHVRIISVARILMPK--SRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318 (328)
Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP~--~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~ 318 (328)
+-. .+.+.-+.-.|-+.+. ..+.|+. =..+..+.......+|||.++.|.++-.+. .+.+.++-+|
T Consensus 145 ~f~--~~~l~Ki~~l~~~~~~~~~~~~I~V-DGGI~~~ti~~l~~aGad~~V~GS~iF~~~--d~~~~i~~lr 212 (220)
T PRK08883 145 SFI--PHTLDKLRAVRKMIDASGRDIRLEI-DGGVKVDNIREIAEAGADMFVAGSAIFGQP--DYKAVIDEMR 212 (220)
T ss_pred CCC--HHHHHHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHH
T ss_conf 455--7799999999998874499807999-898789999999987999999682674899--9999999999
No 227
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=72.96 E-value=7.1 Score=18.85 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 685799999999996498389973036888744289999988762136883241025-6999999987415760697513
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
-+.|.-++.+++..+.|+.-+|+--..+-..+.....++..+|......+++|.+.- -+..-.|-+-.+||+|. +
T Consensus 153 Ht~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~----i 228 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDG----I 228 (472)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCH----H
T ss_conf 528999999999997279878840000269868899999999974597069850455561799999999817642----2
Q ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHH-HHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 43777732058888989999999999-98798557707866898999999999999740
Q gi|254780485|r 167 DTSERFYPHVTTTHTFEDRLQTLENV-RKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 167 et~~~~~~~~~~~~~~~~~l~~~~~a-~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
||+-.-..- .+.|.. .++|-.| +..|+.++- -.|-.++..+++..+|+-
T Consensus 229 DTAisp~S~-gtsqP~---tEtmv~aL~gt~yDtgl-----d~~~l~~~~~yf~~vrkk 278 (472)
T COG5016 229 DTAISPLSG-GTSQPA---TETMVAALRGTGYDTGL-----DLELLEEIAEYFREVRKK 278 (472)
T ss_pred HHHHCCCCC-CCCCCC---HHHHHHHHCCCCCCCCC-----CHHHHHHHHHHHHHHHHH
T ss_conf 210045557-888995---89999996279987653-----699999999999999998
No 228
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=72.58 E-value=7.2 Score=18.79 Aligned_cols=38 Identities=26% Similarity=0.395 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECC--CCCHHHHHHHHHHHH
Q ss_conf 989999999999987985577078668--989999999999997
Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKVCCGGILGL--GEMIDDRIDMLLTLA 222 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~G~~~~sg~l~G~--gEt~eeri~~l~~lr 222 (328)
|.-+-+++++.|++.|+.. ++=| |||...-|.||.---
T Consensus 347 TlTET~~Av~lA~~~gY~~----viSHRSGETEDttIADLAVA~ 386 (430)
T TIGR01060 347 TLTETLDAVELAKKAGYTA----VISHRSGETEDTTIADLAVAL 386 (430)
T ss_pred CHHHHHHHHHHHHHCCCEE----EEEECCCCCHHHHHHHHHHHH
T ss_conf 4888999999999669848----997157898312699999983
No 229
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.42 E-value=7.3 Score=18.77 Aligned_cols=137 Identities=12% Similarity=-0.003 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---CCCHHHHHHHHHHH----CCCCCCEEEEC----CCCCHHHHHH
Q ss_conf 0006857999999999964983899730368887---44289999988762----13688324102----5699999998
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPK---ERDLSIIVDMIKGV----KSLGLETCMTL----GMLSFEQAQI 153 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~---~~~~~~~~e~i~~i----~~~~~~i~~~~----g~~~~~~~~~ 153 (328)
.+..+.|.+.+.+..+.+.|++.+.+.+...... ....+++.+.++.+ .+.++.+++.. +.-+-+++.+
T Consensus 93 ~R~~~~e~~~kaI~lA~~LGi~~I~lag~dv~~~~~~~e~~~~f~e~L~~~~~~A~~~gV~L~iE~~~~~f~~t~~~~~~ 172 (283)
T PRK13209 93 VRAQGLEIMRKAIQLAQDLGIRVIQLAGYDVYYEEANNETRRRFIDGLKESVEMASRYSVTLAFEIMDTPFMGSISKALG 172 (283)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHCCHHHHHH
T ss_conf 99999999999999999809998996887667887859999999999999999999859989994255343215999999
Q ss_pred -HHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHH-HHHHCCCCCC-----CEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf -7415760697513437777320588889899999999-9998798557-----70786689899999999999974088
Q gi|254780485|r 154 -LSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLE-NVRKSGIKVC-----CGGILGLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 154 -Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~-~a~~~G~~~~-----sg~l~G~gEt~eeri~~l~~lr~l~~ 226 (328)
.+..+-..+.++.|+..- ..-..+..+-+.... .....-++-+ -.+.+|.|. -|..+.+..|++++.
T Consensus 173 ~i~~v~sP~l~v~~D~gn~----~~~~~d~~~~i~~~~~~I~~vH~kD~~~g~~~~vp~G~G~--vdf~~vf~aLk~~gY 246 (283)
T PRK13209 173 YAHYLNSPWFQLYPDIGNL----SAWDNDVQMELQAGIGHIVAFHVKDTKPGVFKNVPFGEGV--VDFERAFKTLKQSGY 246 (283)
T ss_pred HHHHCCCCCEEEEECHHHH----HHCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHCC
T ss_conf 9996699728999445779----8756999999997244568985314779976757898885--088999999999799
Q ss_pred C
Q ss_conf 8
Q gi|254780485|r 227 P 227 (328)
Q Consensus 227 ~ 227 (328)
.
T Consensus 247 ~ 247 (283)
T PRK13209 247 C 247 (283)
T ss_pred C
T ss_conf 7
No 230
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=72.01 E-value=7.4 Score=18.70 Aligned_cols=201 Identities=15% Similarity=0.064 Sum_probs=103.2
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCHHHHHHHHHHH-CCC
Q ss_conf 45307868342321243354777564100068579999999999649838997303688-8744289999988762-136
Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWRE-PKERDLSIIVDMIKGV-KSL 135 (328)
Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~-~~~~~~~~~~e~i~~i-~~~ 135 (328)
+-+.-+-|+.-.++= + . + ..+ . ...++.|+...+.|+.+++++--..- ...... ++++.+ +..
T Consensus 7 IDi~~gk~Vrl~~G~-~--~-~---~~~--~--~dP~~~a~~~~~~Ga~~lhvvDLdaa~g~~~N~----~~I~~i~~~~ 71 (231)
T PRK13586 7 IDISKGKAVKRIRGV-E--G-T---GLV--L--GDPLKIAEELYNEGYDSIHVVDLDAAEGKGDNE----EYIKRICKIG 71 (231)
T ss_pred EEEECCEEEECCCCC-C--C-C---CCC--C--CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCHH----HHHHHHHHHC
T ss_conf 997799476897715-7--9-8---876--6--899999999998799989999671568998439----9999999745
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--CHHHHHCCCCCCCHHHHHHHHHHHHH----CCCCCCC-EE--EEC
Q ss_conf 883241025699999998741576069751343--77773205888898999999999998----7985577-07--866
Q gi|254780485|r 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT--SERFYPHVTTTHTFEDRLQTLENVRK----SGIKVCC-GG--ILG 206 (328)
Q Consensus 136 ~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let--~~~~~~~~~~~~~~~~~l~~~~~a~~----~G~~~~s-g~--l~G 206 (328)
+..+.+.-|..+.+..+.+.++|++.+.++-.. .|.++.+.. +...+ +++.+.- +. .=|
T Consensus 72 ~~piqvGGGIrs~e~~~~~l~~Ga~kViigS~a~~np~~~~~~~------------~~~G~~~iv~siD~~~~~~v~~~G 139 (231)
T PRK13586 72 FSWIQVGGGIRDVEKAERLLSYDCSAIVMSTLPFTNPDTFRRIV------------AGIGENRVLVSVDYDDRKYVLIKG 139 (231)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCHHHHHHHH------------HHHCCCCEEEEEEECCCCEEEEEC
T ss_conf 98579856717699999999779988997688876959999999------------984996689999975896899848
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHH
Q ss_conf 89899999999999974088886020541120487412445687989999999999996868721423115651656899
Q gi|254780485|r 207 LGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQA 286 (328)
Q Consensus 207 ~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~ 286 (328)
--++-.+..+.+.++.+++.. .+-+ --+-..|| +.+ ++ .+.++.++ +.-. .+.+++| .+-..+..+
T Consensus 140 w~~~~~~~~~~i~~~~~~g~~--~ii~-TdI~~DGt-~~G---~d-~~l~~~i~--~~~~---~~i~aGG-i~s~~Di~~ 205 (231)
T PRK13586 140 WKEKSMKVEDAISHVNSLESL--GVIF-TYVCNEGT-KNG---ID-NNVKRYVK--LVKG---EKEYAGG-IGSIQDLQK 205 (231)
T ss_pred CCCCCCCHHHHHHHHHHCCCC--EEEE-EEECCHHC-CCC---CC-HHHHHHHH--HCCC---CCEEECC-CCCHHHHHH
T ss_conf 726886699999999975998--8999-76451120-368---99-89999998--7189---9599868-899999999
Q ss_pred HHHHHCCCEEEECC
Q ss_conf 99980998899778
Q gi|254780485|r 287 LCFFSGANSIFVGD 300 (328)
Q Consensus 287 ~~L~~GaN~~~~g~ 300 (328)
+ ...|+++.++|-
T Consensus 206 L-~~~G~~gaivG~ 218 (231)
T PRK13586 206 L-KKMGFDYAIVGM 218 (231)
T ss_pred H-HHCCCCEEEEEH
T ss_conf 9-867998899997
No 231
>PRK08782 consensus
Probab=71.29 E-value=7.7 Score=18.60 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=93.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
.+..+.|+....++.+.+.|++-+-+.. +.+ .-.++++.+++..+.+.+-+|. ++.+++....++|++.+.
T Consensus 23 ir~~~~~~a~~~~eal~~gGi~~iEiTl--rt~------~a~~~i~~l~~~~p~~~vGaGTV~~~e~~~~a~~aGA~FiV 94 (219)
T PRK08782 23 VTVDTLDQARRVADALLEGGLPAIELTL--RTP------VAIEALAMLKRELPNIVIGAGTVLSERQLRQSVDAGADFLV 94 (219)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEC--CCC------HHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCEEE
T ss_conf 9759999999999999987998799967--993------39999999998689947999970589999999984998998
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+| ..+ -++++.+++.|++.-.|.+ |+-|...-+ +.+. ..+- |+| .
T Consensus 95 -----SP--------~~~----~~v~~~a~~~~i~~iPGv~-----TpSEi~~A~----~~G~--~~vK---lFP--A-- 139 (219)
T PRK08782 95 -----TP--------GTP----APLARLLADAPIPAVPGAA-----TPTELLTLM----GLGF--RVCK---LFP--A-- 139 (219)
T ss_pred -----CC--------CCC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECC--C--
T ss_conf -----78--------997----9999999981997647859-----999999999----8799--9899---777--3--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE
Q ss_conf 2445687989999999999996868721423115651656899999809988997786
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT 301 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~ 301 (328)
....+-.++|.+ +=-+|+..+.-++| +..+....-|.. .|....|+.
T Consensus 140 ----~~~Gg~~~lkal---~~pfp~~~f~pTGG---V~~~N~~~yl~~-~~v~~vgGS 186 (219)
T PRK08782 140 ----TAVGGLQMLKGL---AGPLSELKLCPTGG---ISETNAAEFLSQ-PNVLCIGGS 186 (219)
T ss_pred ----HHCCCHHHHHHH---HCCCCCCEEEECCC---CCHHHHHHHHHC-CCEEEEECH
T ss_conf ----220849999998---47699981876799---898789999807-993999882
No 232
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=71.29 E-value=7.7 Score=18.60 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----CCCEEEECCCCCHHHHHHHHCCCCCEE
Q ss_conf 685799999999996498389973036888744289999988762136-----883241025699999998741576069
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL-----GLETCMTLGMLSFEQAQILSKAGLDYY 162 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~-----~~~i~~~~g~~~~~~~~~Lk~aG~~~~ 162 (328)
.+.+..+.+++.+.+.|+.++-+|.........+.++..+.++.+++. .+.+.+..+.+++++.-
T Consensus 81 ~~~~~k~~E~~~Ai~~GAdEIDmVin~~~~~~g~~~~v~~~i~~v~~a~~~~~~LKVIlET~~L~~~e~I---------- 150 (258)
T PRK05283 81 DDIAIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALI---------- 150 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHH----------
T ss_conf 9577899999999987995665445089885788799999999999980898438999740347858999----------
Q ss_pred EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCC---CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC
Q ss_conf 75134377773205888898999999999998798---557707866898999999999999740888860205411204
Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGI---KVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328)
Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~---~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328)
....+.+.++|- +|++|. -+.|=|.++..-++..+|+.... ..+. +.+-
T Consensus 151 -----------------------~~As~~a~~aGADFVKTSTGk-~~~gAT~e~v~~M~~aI~~~~~G-~~vG---vKas 202 (258)
T PRK05283 151 -----------------------RKASEIAIKAGADFIKTSTGK-VPVNATLEAARIMLEVIRDMGVG-KTVG---FKPA 202 (258)
T ss_pred -----------------------HHHHHHHHHHCCCEEECCCCC-CCCCCCHHHHHHHHHHHHHHCCC-CCEE---EEEC
T ss_conf -----------------------999999999697988889998-99997999999999999986458-8656---7625
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 874124456879899999999999968
Q gi|254780485|r 240 PGSKFEENKKVDPIEHVRIISVARILM 266 (328)
Q Consensus 240 ~gt~l~~~~~~~~~e~lr~iAi~RL~l 266 (328)
-| --+.++.++.+++.+-.|
T Consensus 203 GG-------Irt~~dA~~yl~L~~~~l 222 (258)
T PRK05283 203 GG-------VRTAEDAAQYLALADEIL 222 (258)
T ss_pred CC-------CCCHHHHHHHHHHHHHHH
T ss_conf 88-------689999999999999972
No 233
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=71.17 E-value=7.7 Score=18.58 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEC-CCEEECCCCCCCCCCCCCHHHH-
Q ss_conf 88898999999999998798557707866898999999999999740888860205-4112048741244568798999-
Q gi|254780485|r 178 TTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPI-NLLIPIPGSKFEENKKVDPIEH- 255 (328)
Q Consensus 178 ~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~-~~~~p~~gt~l~~~~~~~~~e~- 255 (328)
++.+|+.=+|.++.||+.|+-+++-. -+.+|-..+. +-+. +-+-. .-++ ..|+ .......|.++.
T Consensus 132 tGmgy~~EVEmIr~A~~~dl~T~~yv-----f~~e~a~~Ma----~AGa--DiIv~H~GlT-~gG~-iG~~~a~sl~~a~ 198 (268)
T pfam09370 132 TGMGYDLEVEMIRLAHEKGLLTTPYV-----FNVEEARAMA----EAGA--DIIVAHMGLT-TGGT-IGADTALSLDDCV 198 (268)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEE-----CCHHHHHHHH----HCCC--CEEEECCCCC-CCCC-CCCCCCCCHHHHH
T ss_conf 08867999999999997798333132-----6899999999----7499--8999767767-7767-4677767899999
Q ss_pred ---HHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHH--CCCEEEEC
Q ss_conf ---999999999686872142311565165689999980--99889977
Q gi|254780485|r 256 ---VRIISVARILMPKSRLRLAAGRAMMSDELQALCFFS--GANSIFVG 299 (328)
Q Consensus 256 ---lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~--GaN~~~~g 299 (328)
-++...+|=+-|++++-.-+| .--.|+-.+..|.. |+.+.+-+
T Consensus 199 ~~~~~i~~aa~~v~~diIvLchGG-pI~~P~Da~~vl~~t~~~~Gf~Ga 246 (268)
T pfam09370 199 ELINAIARAARSVNPDVIVLCHGG-PIATPEDAQYVLDRTPGCHGFYGA 246 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCC-CCCCHHHHHHHHHCCCCCCEEECC
T ss_conf 999999999998599869995178-889989999999739777667633
No 234
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=71.15 E-value=7.7 Score=18.58 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCEEEEE--ECCCCC-CCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHH-----------HHHC
Q ss_conf 9999999999649838997--303688-8744289999988762-13688324102569999999-----------8741
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCM--GAAWRE-PKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQ-----------ILSK 156 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l--~~~~~~-~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~-----------~Lk~ 156 (328)
.+++.|+...+.|+-|+.+ .+..++ |..+ +-.++.++.+ ...++.+++--|..+-+++. +|-.
T Consensus 43 DPVeLA~~Y~~eGADELVFLDITAS~ecPl~R--~~m~~Vv~r~Ae~VfiPlTVGGGI~~~eD~~GtkiPalevas~~L~ 120 (312)
T TIGR00735 43 DPVELAQRYDEEGADELVFLDITASSECPLGR--ETMIDVVERTAEKVFIPLTVGGGIKSIEDVKGTKIPALEVASKLLR 120 (312)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC--CCHHHHHHHHHHHCCCCEEECCCCCCHHHCCCCCCCHHHHHHHHHH
T ss_conf 82378999876289589851411366678888--0116788887521452222168888432045644427899999985
Q ss_pred CCCCEEEEE
Q ss_conf 576069751
Q gi|254780485|r 157 AGLDYYNHN 165 (328)
Q Consensus 157 aG~~~~~~~ 165 (328)
+|+|-+.+|
T Consensus 121 aGADKvSiN 129 (312)
T TIGR00735 121 AGADKVSIN 129 (312)
T ss_pred CCCCEEEEC
T ss_conf 489846328
No 235
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=71.00 E-value=7.8 Score=18.56 Aligned_cols=120 Identities=22% Similarity=0.229 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-----CCCCEEEECCCCCHHHHHH----HHCCCC
Q ss_conf 8579999999999649838997303688874428999998876213-----6883241025699999998----741576
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-----LGLETCMTLGMLSFEQAQI----LSKAGL 159 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-----~~~~i~~~~g~~~~~~~~~----Lk~aG~ 159 (328)
+.+.-+.+++.+.+.|+.++-++--.......+.+++.+-|+.+++ ..+.+.+..+.+++++..+ -.++|+
T Consensus 75 ~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGA 154 (228)
T COG0274 75 TTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGA 154 (228)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 38889999999998499702564008998369889999999999998287744899974255697999999999999589
Q ss_pred CEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHH--CCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 06975134377773205888898999999999998--798557707866898999999999999
Q gi|254780485|r 160 DYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK--SGIKVCCGGILGLGEMIDDRIDMLLTL 221 (328)
Q Consensus 160 ~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~--~G~~~~sg~l~G~gEt~eeri~~l~~l 221 (328)
|.+. |+-... +....-+.+..|+..-. .|++-. |=+-|.+|....+..-
T Consensus 155 dFVK----TSTGf~----~~gAT~edv~lM~~~vg~~vgvKaS-----GGIrt~eda~~~i~ag 205 (228)
T COG0274 155 DFVK----TSTGFS----AGGATVEDVKLMKETVGGRVGVKAS-----GGIRTAEDAKAMIEAG 205 (228)
T ss_pred CEEE----CCCCCC----CCCCCHHHHHHHHHHHCCCCEEECC-----CCCCCHHHHHHHHHHH
T ss_conf 9898----477878----9898799999999985657105326-----8848899999999975
No 236
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=70.70 E-value=7.9 Score=18.51 Aligned_cols=118 Identities=22% Similarity=0.270 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE--ECCCCCCCCCCHHHHHHHHHHHCC-CC-CCEEEECCCC---CHHHHHHHHCCCCCE
Q ss_conf 8579999999999649838997--303688874428999998876213-68-8324102569---999999874157606
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCM--GAAWREPKERDLSIIVDMIKGVKS-LG-LETCMTLGML---SFEQAQILSKAGLDY 161 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l--~~~~~~~~~~~~~~~~e~i~~i~~-~~-~~i~~~~g~~---~~~~~~~Lk~aG~~~ 161 (328)
+.|.-++.|+++.+.|+--+|| .+|.=.|. .-.|++++||+ .+ +.||+|...- .+-.+.+=.+||+|.
T Consensus 148 Tl~~yl~la~~L~~~G~DSI~IKDMaGlLTP~-----~AYELV~alK~~~~n~pvhLH~H~TtGmA~~AllkA~EAG~d~ 222 (616)
T TIGR01108 148 TLEKYLELAKELLEMGVDSICIKDMAGLLTPK-----VAYELVSALKKEFGNLPVHLHSHATTGMAEMALLKAIEAGADM 222 (616)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH-----HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 78889999999998188605520200464415-----8999999997423974688632472337999999888707880
Q ss_pred EEEECCCCHHHHHCCCCCCCHHHHHHHH-HHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 9751343777732058888989999999-99998798557707866898999999999999740
Q gi|254780485|r 162 YNHNIDTSERFYPHVTTTHTFEDRLQTL-ENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 162 ~~~~let~~~~~~~~~~~~~~~~~l~~~-~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
+||+=.-+.- -+.|++ -|+| ....+.|+.++-- .+-.+++.+++..+|+-
T Consensus 223 ----iDTAisS~S~-gtSHPp---tE~lv~~L~~~gyD~gld-----~~~L~~i~~YFr~VRkK 273 (616)
T TIGR01108 223 ----IDTAISSMSG-GTSHPP---TETLVAALRGTGYDTGLD-----IELLLEIADYFRKVRKK 273 (616)
T ss_pred ----CHHCCCCCCC-CCCCCH---HHHHHHHHHCCCCCCHHH-----HHHHHHHHHHHHHHHHH
T ss_conf ----0200552347-888874---799999970578743102-----79999999999999999
No 237
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.44 E-value=8 Score=18.48 Aligned_cols=188 Identities=15% Similarity=0.171 Sum_probs=111.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEE
Q ss_conf 10006857999999999964983899730368887442899999887621368832410256-99999998741576069
Q gi|254780485|r 84 ASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYY 162 (328)
Q Consensus 84 ~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~ 162 (328)
-.+..+.|+.+..++.+.+.|++-+-+.. +.+. ..+-+.++.+..++..+.+++-+|+ ++.+++....++|++.+
T Consensus 21 Vvr~~~~e~a~~~a~aL~~gGi~~iEiTl--rt~~--a~~~i~~l~~~~~~~~p~~~iGaGTVl~~~~~~~a~~aGA~Fi 96 (223)
T PRK07114 21 VFYHSDIEVAKKVVKACYDGGVRAFEFTN--RGDF--AHEVFGELVKYAAKECPEMILGVGSIVDAATAALYIQLGANFV 96 (223)
T ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEEEC--CCCC--HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 99828999999999999988998899958--8965--8999999999998668980896551889999999998599899
Q ss_pred EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC
Q ss_conf 75134377773205888898999999999998798557707866898999999999999740888860205411204874
Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGS 242 (328)
Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt 242 (328)
. +| ..+ -++++.+++.|++.-.|.+ |+-|...-+ +++. ..+- |+| ..
T Consensus 97 V-----SP--------~~~----~~v~~~~~~~~~~~iPGv~-----TptEi~~A~----~~G~--~~vK---~FP--a~ 143 (223)
T PRK07114 97 V-----GP--------LFN----EDIAKVCNRRKIPYSPGCG-----SVSEIGFAE----ELGC--EIVK---IFP--GD 143 (223)
T ss_pred E-----CC--------CCC----HHHHHHHHHCCCCCCCCCC-----CHHHHHHHH----HCCC--CEEE---ECC--CC
T ss_conf 9-----99--------999----9999999983997537319-----999999999----8799--9798---897--32
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECC---CCCCHHHHHHHHHH
Q ss_conf 124456879899999999999968687214231156516568999998099889977866515---88898999999998
Q gi|254780485|r 243 KFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTA---KNPSYNKDTILFNR 319 (328)
Q Consensus 243 ~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~---~g~~~~~~~~~i~~ 319 (328)
...+ .++|-+ +=-+|+..+.-++| ++-..+.....|.+|+...-+|..+... .....+++.+..++
T Consensus 144 ------~~G~-~~lkal---~~p~p~~~~~PtGG-V~ps~~N~~~~l~ag~~~vG~GS~l~~~~~i~~~d~~~I~~~a~~ 212 (223)
T PRK07114 144 ------VYGP-EFVKAI---KGPMPWTSIMPTGG-VEPTEENLKSWFKAGATCVGMGSKLFPKDKLAAKDWAGITKKVKE 212 (223)
T ss_pred ------CCCH-HHHHHH---HCCCCCCCEEECCC-CCCCHHHHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf ------3599-999998---46499996887999-887355099999689979998846389999865899999999999
No 238
>PRK02145 consensus
Probab=70.00 E-value=8.2 Score=18.42 Aligned_cols=201 Identities=15% Similarity=0.190 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--
Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343--
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328)
..++.|+...+.|+.+++++--...... -....+.++.+ ++.++.+.+.-|..+.++.+++-++|++.+.++-..
T Consensus 32 dP~~~a~~~~~~GadelhivDld~a~~~--~~~~~~~I~~i~~~~~iPi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~ 109 (257)
T PRK02145 32 DPVEIARRYDEQGADELTFLDITATSDG--RDLILPIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVA 109 (257)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHH
T ss_conf 9999999999879998999978887667--54089999999965687489627730468899999819988984155665
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCE---------------EEECC---CCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 777732058888989999999999987985-5770---------------78668---9899999999999974088886
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCG---------------GILGL---GEMIDDRIDMLLTLANLSTPPE 229 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg---------------~l~G~---gEt~eeri~~l~~lr~l~~~~~ 229 (328)
.|++..+. +.+.|=+ +..+ -++-+ -.|.-+..+.+..+.+++. .
T Consensus 110 np~~v~~~---------------~~~fG~q~Iv~siD~k~~~~~~~~~~~~v~~~~~~~~t~~~~~~~~~~~~~~G~--g 172 (257)
T PRK02145 110 NPQLVRDA---------------ADKYGSQCIVVAIDAKRVSADGEPPRWEVFTHGGRKATGLDAVEWARKMAELGA--G 172 (257)
T ss_pred CCCHHHHH---------------HHHCCCCCEEEEEEEEECCCCCCCCEEEEEECCCEECCCCCHHHHHHHHHHCCC--C
T ss_conf 93022457---------------876698344999998733677777508999778714367745576568876187--8
Q ss_pred EEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHC-CCEEEECCEEECCCCC
Q ss_conf 020541120487412445687989999999999996868721423115651656899999809-9889977866515888
Q gi|254780485|r 230 SIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSG-ANSIFVGDTLLTAKNP 308 (328)
Q Consensus 230 ~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~G-aN~~~~g~~~~t~~g~ 308 (328)
.+-+ .-+-..|| +. .++ .+.++-++ -..+ ..+.+++|-- -..++.. ++..| ++++..|.- ..-+.-
T Consensus 173 eil~-tdI~rDG~-~~---G~d-l~l~~~i~---~~~~-ipvIasGGi~-s~~di~~-~~~~~~~~av~~g~~-~~~~~~ 239 (257)
T PRK02145 173 EILL-TSMDRDGT-KS---GFD-LALTRAVS---DAVP-VPVIASGGVG-SLQHLAD-GITEGHADAVLAASI-FHYGEH 239 (257)
T ss_pred EEEE-EEECCCCC-CC---CCC-HHHHHHHH---HCCC-CCEEEECCCC-CHHHHHH-HHHHCCCCEEEEHHH-HHCCCC
T ss_conf 6899-99847787-78---889-79999998---6269-9899986899-9999999-998089848765326-777998
Q ss_pred CHHHHHHHHHHCCCCC
Q ss_conf 9899999999829853
Q gi|254780485|r 309 SYNKDTILFNRLGLIP 324 (328)
Q Consensus 309 ~~~~~~~~i~~~G~~P 324 (328)
++.+..+.+++.|+.-
T Consensus 240 ~i~e~k~~l~~~~~~v 255 (257)
T PRK02145 240 TVGEAKRFMAERGIAV 255 (257)
T ss_pred CHHHHHHHHHHCCCCC
T ss_conf 9999999999877960
No 239
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=69.90 E-value=8.2 Score=18.40 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC-EE-EECCCCCHHHHHHHHCCCCCEEE
Q ss_conf 0685799999999996498389973036888744289999988762136883-24-10256999999987415760697
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE-TC-MTLGMLSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~-i~-~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328)
..++||+...| .+....-+. +++..... .+...+++..+++.+.. +. +--|.+..+.+.+|+++|++.+.
T Consensus 49 ~~tp~e~v~aA---~~~dv~vIg-vSsl~g~h---~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 49 FQTPEEAVRAA---VEEDVDVIG-VSSLDGGH---LTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCCHHHHHHHH---HHCCCCEEE-EEECCCHH---HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf 58999999999---864798899-97344047---89999999999981975548865686681367999981866546
No 240
>PRK00830 consensus
Probab=69.80 E-value=8.3 Score=18.39 Aligned_cols=218 Identities=14% Similarity=0.069 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 799999999996498389973036888744289999988762-136883241025699999998741576069751343-
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT- 168 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let- 168 (328)
...++.|+...+.|+.+++++--......+ ....+.++.+ ++.++.+++--|..+.++.+++-++|++.+.++=-.
T Consensus 34 gdP~~~ak~~~~~gadelhivDld~a~~g~--~~~~~~I~~i~~~~~~pi~vGGGIrs~e~~~~ll~~GadkVvIgS~a~ 111 (273)
T PRK00830 34 GDPVELAKRYYEDGADELVFLDITASHEGR--ATMIDVIERTAEEVFIPLTVGGGIRSIEDIRQILRAGADKVSVNTAAV 111 (273)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEEECCCCCC--CCHHHHHHHHHHHCCCCEEEECCEEECCCHHHHHHCCCCEEECHHHHH
T ss_conf 899999999998799989999532464688--427999999998669958960884377328999976986398379898
Q ss_pred -CHHHHHCCCCCCCHHHH---HHHHH------------HHHHCCCCCC-CEEEEC-CCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf -77773205888898999---99999------------9998798557-707866-898999999999999740888860
Q gi|254780485|r 169 -SERFYPHVTTTHTFEDR---LQTLE------------NVRKSGIKVC-CGGILG-LGEMIDDRIDMLLTLANLSTPPES 230 (328)
Q Consensus 169 -~~~~~~~~~~~~~~~~~---l~~~~------------~a~~~G~~~~-sg~l~G-~gEt~eeri~~l~~lr~l~~~~~~ 230 (328)
.|++..+.......+-. +++-+ ...+-|.+.. --.+.| --.|.-+.++.+..+.+++. ..
T Consensus 112 ~np~~v~~~~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~g~~~w~~v~~~g~~~~t~~~~~~~~~~~~~~G~--ge 189 (273)
T PRK00830 112 KNPEFIREASDIFGSQCIVVAIDCKRNYNPKDNPDKTIVELEDGTCAWYEVVIYGGREFTGIDAVQWAKKVEELGA--GE 189 (273)
T ss_pred HCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCC--CE
T ss_conf 5907789999876990599999843376654567621454047874228999707803378679999999986498--86
Q ss_pred EECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCH
Q ss_conf 20541120487412445687989999999999996868721423115651656899999809988997786651588898
Q gi|254780485|r 231 IPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSY 310 (328)
Q Consensus 231 v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~ 310 (328)
+-+ .-+-..|| + .....+.++-++- . -+..+.+++|- .-..+..+..-..+++++.+|.-+ .-+.-++
T Consensus 190 il~-tdI~rDGt-~----~G~d~~l~~~i~~--~--~~iPvIasGGv-~~~~di~~~~~~~~~~~v~~gs~f-~~~~~si 257 (273)
T PRK00830 190 ILL-TSMDRDGT-K----DGYDIPITKKISE--E--VDIPVIASGGV-GNPEHIYEGFSDGKADAALAASIF-HFNEYSI 257 (273)
T ss_pred EEE-EEECCCCC-C----CCCCHHHHHHHHH--C--CCCCEEEECCC-CCHHHHHHHHHHCCCCEEEEEHHH-HCCCCCH
T ss_conf 888-78757796-5----6889699999986--3--79988998899-999999999983898688770056-6699799
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999999829853
Q gi|254780485|r 311 NKDTILFNRLGLIP 324 (328)
Q Consensus 311 ~~~~~~i~~~G~~P 324 (328)
.+..+.+++.|+.-
T Consensus 258 ~e~k~~L~~~~i~v 271 (273)
T PRK00830 258 REVKEYLRERGIPV 271 (273)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999877963
No 241
>PRK13753 dihydropteroate synthase; Provisional
Probab=69.42 E-value=8.4 Score=18.33 Aligned_cols=155 Identities=16% Similarity=0.234 Sum_probs=89.7
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CCCC-----CCCCHHHH
Q ss_conf 69998645307868342321243354777564100068579999999999649838997303-6888-----74428999
Q gi|254780485|r 52 IQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAA-WREP-----KERDLSII 125 (328)
Q Consensus 52 V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~-~~~~-----~~~~~~~~ 125 (328)
|.+-+++|+ |.- +||- ....++.++.++.+++..+.|+.-+-+++- .++. ...+++++
T Consensus 2 v~IMGIlNv-TPD--------SFsD-------gg~~~~~~~a~~~a~~mi~~GAdIIDIGgeSTRPga~~vs~eeE~~Rv 65 (279)
T PRK13753 2 VTVFGILNL-TED--------SFFD-------ESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRI 65 (279)
T ss_pred CEEEEEEEC-CCC--------CCCC-------CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 549999848-999--------9988-------875789999999999999879969997987789999808999999999
Q ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE--ECCCCHHHHHC----------CC----C----C--C-C-
Q ss_conf 998876213688324102569999999874157606975--13437777320----------58----8----8--8-9-
Q gi|254780485|r 126 VDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNH--NIDTSERFYPH----------VT----T----T--H-T- 181 (328)
Q Consensus 126 ~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~--~let~~~~~~~----------~~----~----~--~-~- 181 (328)
...++.+++.... +|+.+...+..+.--++|++.+|- .+. .|..+.. .| + . + .
T Consensus 66 ~pvi~~l~~~~~~--iSIDT~~~~Va~~Al~~Ga~iINDIsG~~-d~~m~~~va~~~~~~vlMH~~~~~~~~~~~~~~~~ 142 (279)
T PRK13753 66 APLLDALSDQMHR--VSIDSFQPETQRYALKRGVGYLNDIQGFP-DPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRP 142 (279)
T ss_pred HHHHHHHHHHCCC--EEEECCCHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 9999999860896--79978859999999983977884501033-83689999971998899826899988777778887
Q ss_pred ------HHHHH-HHHHHHHHCCCCCC-----CEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf ------89999-99999998798557-----7078668989999999999997408
Q gi|254780485|r 182 ------FEDRL-QTLENVRKSGIKVC-----CGGILGLGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 182 ------~~~~l-~~~~~a~~~G~~~~-----sg~l~G~gEt~eeri~~l~~lr~l~ 225 (328)
..+|+ +.++.+.+.|++.. .|+=||.|-+.++-++.+..|.++.
T Consensus 143 ~dvv~ev~~~~~~~i~~~~~~Gi~~~~IilDPGiGF~~gK~~~~nl~il~~l~~l~ 198 (279)
T PRK13753 143 EDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLK 198 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 55799999999999999998799867789837989499987788999998799997
No 242
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=68.79 E-value=8.7 Score=18.25 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=85.7
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH---------CCC--CCCEEEECCCCCHHHHHHHHCCCCCEEE
Q ss_conf 99999996498389973036888744289999988762---------136--8832410256999999987415760697
Q gi|254780485|r 95 KEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV---------KSL--GLETCMTLGMLSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 95 ~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i---------~~~--~~~i~~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328)
+.|+.+...|+.-+-..+ ++.+ ..+|.. |.. +-.+.+ ..+.++...|.++|+|.+-
T Consensus 3 ~MA~Aa~~gGA~giR~~~---------~~dI-~aik~~v~vPIIGi~K~~~~~~~VyI---TPt~~ev~~l~~aGadiIA 69 (192)
T pfam04131 3 AMALAAEQAGAVGIRIEG---------VNNI-KAIRAIVDLPIIGIVKRDLPDSPVRI---TPTMKDIDELANAGADIIA 69 (192)
T ss_pred HHHHHHHHCCCEEEECCC---------HHHH-HHHHHHCCCCEEEEEECCCCCCCCEE---CCCHHHHHHHHHCCCCEEE
T ss_conf 899999978964997199---------9999-99998589987999856789998165---5889999999985999999
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+|...+. +| .+.+ +.++..|+.|. .+.-=.-|.||-. ...+++...-+-.+.-+++ .|+
T Consensus 70 --~DaT~R~----RP-~~~~---~lv~~i~~~~~-----l~MAD~st~eea~----~A~~~G~D~I~TTL~GYT~--~t~ 128 (192)
T pfam04131 70 --LDGTDRP----RP-VDIE---SFIKRIKEKGQ-----LAMADCSTFEEGL----NAHKLGVDIVGTTLSGYTG--GSN 128 (192)
T ss_pred --EECCCCC----CC-CCHH---HHHHHHHHHCC-----EEEEECCCHHHHH----HHHHCCCCEEECCCCCCCC--CCC
T ss_conf --8467898----97-5899---99999998199-----8899749999999----9998599999823255789--999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf 24456879899999999999968687214231156516568999998099889977866
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
- ..++.++++-++- . + ..-|.=||.. .++....+|..||+++.+|.-+
T Consensus 129 ~----~~pD~~ll~~l~~----~-~-~pvIaEGri~-tPe~a~~a~~~GA~aVVVGsAI 176 (192)
T pfam04131 129 P----AEPDFQLVKTLSE----A-G-CFVIAEGRYN-TPELAKKAIEIGADAVTVGSAI 176 (192)
T ss_pred C----CCCCHHHHHHHHH----C-C-CCEEEECCCC-CHHHHHHHHHCCCCEEEECCCC
T ss_conf 9----9997899999986----8-9-9399857989-9999999998399899989653
No 243
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=68.73 E-value=8.7 Score=18.24 Aligned_cols=193 Identities=16% Similarity=0.090 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHCCC--CCCEEEEC-CCCCHHH----HHHHHCCCCCEEEEECCCCHHH----HHCCCCCCCHHHHHHH
Q ss_conf 4289999988762136--88324102-5699999----9987415760697513437777----3205888898999999
Q gi|254780485|r 120 RDLSIIVDMIKGVKSL--GLETCMTL-GMLSFEQ----AQILSKAGLDYYNHNIDTSERF----YPHVTTTHTFEDRLQT 188 (328)
Q Consensus 120 ~~~~~~~e~i~~i~~~--~~~i~~~~-g~~~~~~----~~~Lk~aG~~~~~~~let~~~~----~~~~~~~~~~~~~l~~ 188 (328)
+.++++++.++.+|.. +..+.+|+ |..++++ .+.+.++|+|.+.+|+-. |.. .-..--..+.+---++
T Consensus 81 ~~le~~L~~i~~~k~~~P~~~vIaSI~g~~~~e~w~~la~~~e~~GaDalELNiSC-Pn~~~~~~~G~~~gq~pe~v~~i 159 (413)
T PRK08318 81 RPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGC-PHGMSERGMGSAVGQVPELVEMV 159 (413)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCHHHCCCHHHHHHH
T ss_conf 58999999999988607897089999458788999999998665188779995556-77666665551105799999999
Q ss_pred HHHHHH-CCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE-ECCCEEECCCCCCCC------------CCCCCH--
Q ss_conf 999998-7985577078668989999999999997408888602-054112048741244------------568798--
Q gi|254780485|r 189 LENVRK-SGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI-PINLLIPIPGSKFEE------------NKKVDP-- 252 (328)
Q Consensus 189 ~~~a~~-~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v-~~~~~~p~~gt~l~~------------~~~~~~-- 252 (328)
.++.++ ..+++ ++=+.-...+..+....+.+-+. +++ .+|.+.+..+...+. ....|.
T Consensus 160 ~~~Vk~~~~iPV----~vKLsPnvtdi~~iA~aa~~aGA--Dgv~liNTi~~~~~iDid~~~~~p~i~~~~~~GGlSG~a 233 (413)
T PRK08318 160 TRWVKRGSRLPV----IAKLTPNITDIREPARAAKRGGA--DAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPA 233 (413)
T ss_pred HHHHHHHCCCCE----EEEECCCCCCHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCHH
T ss_conf 999885068856----99828997528999999997699--889998147865532022355302106777767666456
Q ss_pred --HHHHHHHHH-HHH-HCCCCCCEEEE-HHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC-----HHHHHHHHHHCCC
Q ss_conf --999999999-999-68687214231-1565165689999980998899778665158889-----8999999998298
Q gi|254780485|r 253 --IEHVRIISV-ARI-LMPKSRLRLAA-GRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS-----YNKDTILFNRLGL 322 (328)
Q Consensus 253 --~e~lr~iAi-~RL-~lP~~~i~i~~-~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~-----~~~~~~~i~~~G~ 322 (328)
--.||+++. +|- -+|+ ++|.+ |=..-+.+. -.-|++||+.+.++--+ -..|.. .++..+.+.+-||
T Consensus 234 ikPiALr~V~~i~~~~~~~~--ipIiG~GGI~s~~Da-~e~ilaGAsaVQv~Ta~-~~~G~~ii~~i~~gL~~~m~~~G~ 309 (413)
T PRK08318 234 VKPIALNMVAEIARDPETRG--LPISGIGGIETWRDA-AEFILLGAGTVQVCTAA-MQYGFRIVEDMISGLSHYMDEKGF 309 (413)
T ss_pred HHHHHHHHHHHHHHHCCCCC--CCEEEECCCCCHHHH-HHHHHHCCCCEEEEEHH-HHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 76999999999986346788--377975685989999-99998278921675101-433844899999999999998099
Q ss_pred C
Q ss_conf 5
Q gi|254780485|r 323 I 323 (328)
Q Consensus 323 ~ 323 (328)
.
T Consensus 310 ~ 310 (413)
T PRK08318 310 A 310 (413)
T ss_pred C
T ss_conf 7
No 244
>PRK10060 RNase II stability modulator; Provisional
Probab=68.63 E-value=8.7 Score=18.23 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=4.6
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998798
Q gi|254780485|r 188 TLENVRKSGI 197 (328)
Q Consensus 188 ~~~~a~~~G~ 197 (328)
.|..||+.|-
T Consensus 380 Amy~AK~~Gr 389 (663)
T PRK10060 380 AMYTAKEGGR 389 (663)
T ss_pred HHHHHHHCCC
T ss_conf 9999997089
No 245
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=67.77 E-value=9.1 Score=18.11 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC
Q ss_conf 79899999999999968687214231156516568999998099889977
Q gi|254780485|r 250 VDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328)
Q Consensus 250 ~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328)
.+++...+++...|-..|+..|-.-+ |. . .-......+|||.+.-+
T Consensus 473 ~d~~~~~~iv~~~r~~~P~l~I~aRa-r~--~-~~~~~L~~~Ga~~vv~E 518 (602)
T PRK03659 473 NEPEDTMKLVELCQQHFPHLHILARA-RG--R-VEAHELLQAGVTQFSRE 518 (602)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEE-CC--H-HHHHHHHHCCCCEEECC
T ss_conf 98999999999999878699699986-97--8-99999997899978662
No 246
>pfam02662 FlpD Methyl-viologen-reducing hydrogenase, delta subunit. This family consist of methyl-viologen-reducing hydrogenase, delta subunit / heterodisulphide reductase. No specific functions have been assigned to this subunit. The aligned region corresponds to almost the entire delta chain sequence and contains 4 conserved cysteine residues. However, in two Archaeoglobus sequences this region corresponds to only the C-terminus of these proteins.
Probab=67.09 E-value=8.1 Score=18.43 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHCCCEEEE
Q ss_conf 656899999809988997
Q gi|254780485|r 281 SDELQALCFFSGANSIFV 298 (328)
Q Consensus 281 ~~~~~~~~L~~GaN~~~~ 298 (328)
.+.+-..+|..|||++++
T Consensus 41 ~~~~il~A~~~GADGV~V 58 (124)
T pfam02662 41 NPSLILKALEKGADGVLV 58 (124)
T ss_pred CHHHHHHHHHCCCCEEEE
T ss_conf 999999999869997999
No 247
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=66.81 E-value=9.5 Score=17.99 Aligned_cols=170 Identities=15% Similarity=0.112 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHCCC--CCCEEEECCCCCHHH----HHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 4289999988762136--883241025699999----9987415760697513437777320588889899999999999
Q gi|254780485|r 120 RDLSIIVDMIKGVKSL--GLETCMTLGMLSFEQ----AQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVR 193 (328)
Q Consensus 120 ~~~~~~~e~i~~i~~~--~~~i~~~~g~~~~~~----~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~ 193 (328)
...+++.+.++..+.. +..+.+|++-.+.++ .+++.++|+|.+.+|+-+ |..-.......+.+...++++..+
T Consensus 80 ~g~~~~~~~l~~~~~~~~~~pli~Si~~~~~~~~~~~a~~~~~~gad~lElNiSc-Pn~~~~~~~~~~~~~~~~i~~~v~ 158 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSC-PNVGGGRQLGQDPEAVANLLKAVK 158 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC-CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7889999999999861799539997888987899999999998479848998403-675655320149999999999998
Q ss_pred HC-CCCCCCEEEECC--CCCHHHHHHHHHHHHHCCCCCCEEE-CCCEEECC---CC--C-CC-CCCCCCH----HHHHHH
Q ss_conf 87-985577078668--9899999999999974088886020-54112048---74--1-24-4568798----999999
Q gi|254780485|r 194 KS-GIKVCCGGILGL--GEMIDDRIDMLLTLANLSTPPESIP-INLLIPIP---GS--K-FE-ENKKVDP----IEHVRI 258 (328)
Q Consensus 194 ~~-G~~~~sg~l~G~--gEt~eeri~~l~~lr~l~~~~~~v~-~~~~~p~~---gt--~-l~-~~~~~~~----~e~lr~ 258 (328)
+. .+++ ++=+ -.+.++..+.+..+.+.+. +++. +|.+.... .+ + .. .....|. .-.|++
T Consensus 159 ~~~~~Pv----~vKLsp~~~~~~~~~ia~~~~~~ga--~gv~~~Nt~~~~~~~~~~~~~~~~~~~gGlSG~~i~~~al~~ 232 (289)
T cd02810 159 AAVDIPL----LVKLSPYFDLEDIVELAKAAERAGA--DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRW 232 (289)
T ss_pred HCCCCCE----EEECCCCCCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 6026874----8842788761689999999997599--689996787765554444554456776523662778899999
Q ss_pred HHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEE
Q ss_conf 999999686872142311565165689999980998899
Q gi|254780485|r 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIF 297 (328)
Q Consensus 259 iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~ 297 (328)
++-.|=.++.....+..|=.. ..+-....|.+||+.+.
T Consensus 233 v~~~~~~~~~~i~Iig~GGI~-~~~da~e~i~aGA~~Vq 270 (289)
T cd02810 233 VARLAARLQLDIPIIGVGGID-SGEDVLEMLMAGASAVQ 270 (289)
T ss_pred HHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHCCCCHHH
T ss_conf 999999749996099989939-99999999984997999
No 248
>PRK02227 hypothetical protein; Provisional
Probab=66.12 E-value=9.8 Score=17.90 Aligned_cols=129 Identities=16% Similarity=0.212 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC---EEEE------CC-CCCHHHHHHHHCCC
Q ss_conf 85799999999996498389973036888744289999988762136883---2410------25-69999999874157
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE---TCMT------LG-MLSFEQAQILSKAG 158 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~---i~~~------~g-~~~~~~~~~Lk~aG 158 (328)
....+...+..+...|+.-+-++..+........+.+....+.++..... |.+- .+ +...+.....+++|
T Consensus 65 ~~~~i~~a~~~~a~~GvdyVKvGl~~~~~~~~~~~~l~~v~~a~k~~~~~~~~VaV~yAD~~~~~~~~p~~i~~~a~~~g 144 (239)
T PRK02227 65 KPGTAALAALGAAATGVDYVKVGLYGTKTAEEAVEVMAAVVRAVKDLDPNKRVVAVLYADAGRDGSISPLDLPAIAAEAG 144 (239)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf 93799999987661399989994578886799999999999987511679739999983264224788677899999859
Q ss_pred CCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 606975134377773205888898999999999998798557707866898999999999999740888
Q gi|254780485|r 159 LDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 159 ~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~ 227 (328)
.+.+. +||...-........+.++--+..+.+|+.|+.++ +-|.. +.+|+..|+.++..
T Consensus 145 ~~gvM--iDT~~Kdg~sL~d~~~~~~L~~fv~~a~~~gl~~g---LAGSL-----~~~di~~L~~l~Pd 203 (239)
T PRK02227 145 FDGAM--LDTAGKDGRSLFDHMDEEELAEFVAEARAHGLMTA---LAGSL-----KLEDIPALKRLGPD 203 (239)
T ss_pred CCEEE--EECCCCCCCCHHHCCCHHHHHHHHHHHHHCCCEEE---EECCC-----CHHHHHHHHHCCCC
T ss_conf 98999--86367888753423899999999999997599399---84568-----87888999756999
No 249
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=65.78 E-value=9.9 Score=17.86 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCE----E-ECCCEEECCCCCCCCCC----CCC----HHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 8999999999999740888860----2-05411204874124456----879----899999999999968687214231
Q gi|254780485|r 209 EMIDDRIDMLLTLANLSTPPES----I-PINLLIPIPGSKFEENK----KVD----PIEHVRIISVARILMPKSRLRLAA 275 (328)
Q Consensus 209 Et~eeri~~l~~lr~l~~~~~~----v-~~~~~~p~~gt~l~~~~----~~~----~~e~lr~iAi~RL~lP~~~i~i~~ 275 (328)
+...+.-+++..+|......++ + +-....+.||.-+.+.. ... -.|.++.++-.|-.|-+ .+.++-
T Consensus 262 ~~l~~~~~y~~~vr~~y~~~e~~~~~~d~~v~~hq~PGG~~snl~~Ql~~~g~~dr~~eV~~e~~~V~~~lG~-~~~VTP 340 (580)
T PRK09282 262 ELLEEIAAYFREVRKKYAKFEGELKGVDSRVLVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGY-PPLVTP 340 (580)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-CCEECC
T ss_conf 9999999999999998532786666689535651488206677999999768475699999999999997599-861284
Q ss_pred HH
Q ss_conf 15
Q gi|254780485|r 276 GR 277 (328)
Q Consensus 276 ~~ 277 (328)
+.
T Consensus 341 ~S 342 (580)
T PRK09282 341 TS 342 (580)
T ss_pred HH
T ss_conf 99
No 250
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012837 This enzyme is a member of the radical-SAM protein and utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centred radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO). The two components form an alpha-2/beta-2 heterodimer.; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity, 0051539 4 iron 4 sulfur cluster binding, 0005737 cytoplasm.
Probab=65.55 E-value=10 Score=17.83 Aligned_cols=94 Identities=11% Similarity=0.164 Sum_probs=52.8
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE--EEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 99864530786834232124335477756410006857999999999964983--8997303688874428999998876
Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT--RYCMGAAWREPKERDLSIIVDMIKG 131 (328)
Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~--~~~l~~~~~~~~~~~~~~~~e~i~~ 131 (328)
++.-+.+ + .|.-.|.=| |.+..-. ...-..++.+..-+.++.+.+.++. -+.+ +||+|..+.-++.++++++.
T Consensus 16 ~R~slfv-a-GC~H~C~GC-~N~~TW~-~~~G~~~t~~~~~~i~~~l~~~~~~~~G~tl-sGGDPL~~~N~~~~~~l~k~ 90 (158)
T TIGR02491 16 IRVSLFV-A-GCKHHCEGC-FNKETWN-FNGGEEFTEELEKEIIRDLNDNPILIDGLTL-SGGDPLYPANVEELIELVKK 90 (158)
T ss_pred EEEEEEE-C-CCCCCCCCC-CCCCCCC-CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE-CCCCCCCCCCHHHHHHHHHH
T ss_conf 4899860-4-760388888-7835557-6789420368899999985128816630143-18888872443689999999
Q ss_pred HCCCCC-C-EEEECCCCCHHHHH
Q ss_conf 213688-3-24102569999999
Q gi|254780485|r 132 VKSLGL-E-TCMTLGMLSFEQAQ 152 (328)
Q Consensus 132 i~~~~~-~-i~~~~g~~~~~~~~ 152 (328)
+|...+ . |.+=.|..=+|-+.
T Consensus 91 ~k~~~P~kdIW~wTGY~~Eei~~ 113 (158)
T TIGR02491 91 IKAELPEKDIWLWTGYTWEEILE 113 (158)
T ss_pred HHHHCCCCCEEEECCCCHHHHHC
T ss_conf 99857899689830766888750
No 251
>PRK13113 consensus
Probab=65.46 E-value=10 Score=17.82 Aligned_cols=202 Identities=13% Similarity=0.128 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC---------------CHHHHHHHHHHHCCCCC---CEEEE---C-CC
Q ss_conf 857999999999964983899730368887-44---------------28999998876213688---32410---2-56
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPK-ER---------------DLSIIVDMIKGVKSLGL---ETCMT---L-GM 145 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~---------------~~~~~~e~i~~i~~~~~---~i~~~---~-g~ 145 (328)
+.|.-++.++...+.|+.-+-++-=.-+|. +. .++.++++++.++.... .+.++ + ..
T Consensus 29 ~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~PivlM~Y~N~i~~ 108 (263)
T PRK13113 29 DYDTSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRALEGGMTLDRTLDMVRAFRKEDDTTPIVMMGYYNPIYS 108 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHH
T ss_conf 97999999999997699999978988887765899999999999779838899999997512389988899831368988
Q ss_pred CC-HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 99-99999874157606975134377773205888898999999999998798557707866898999999999999740
Q gi|254780485|r 146 LS-FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 146 ~~-~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
.. +.-+++.+++|++.+++ |.-.+++--+..+.+++.|+..- .++.. -|.++|+..+....
T Consensus 109 ~G~e~F~~~~~~~GvdGvIi-------------pDLP~eE~~~~~~~~~~~~l~~I--~lvaP-tt~~~Ri~~i~~~a-- 170 (263)
T PRK13113 109 RGVDRFLAEAKEAGIDGLIV-------------VDLPPEEDSELCLPAQAAGLNFI--RLATP-TTDDRRLPKVLQNT-- 170 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEE-------------CCCCHHHHHHHHHHHHHCCCCEE--EEECC-CCCHHHHHHHHHCC--
T ss_conf 56999999987779436971-------------79997888999999997798679--99479-99999999998338--
Q ss_pred CCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEEC
Q ss_conf 88886020541120487412445687989999999999996868721423115651656899999809988997786651
Q gi|254780485|r 225 STPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLT 304 (328)
Q Consensus 225 ~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t 304 (328)
..++- .+...|+.- .......+....++-.|-.. .+++..|-.--.++.. ..+..+||++++|..++.
T Consensus 171 ---~gFiY---~Vs~~GvTG--~~~~~~~~~~~~i~~ik~~t---~~Pv~vGFGI~~~e~~-~~~~~~ADGvIVGSa~v~ 238 (263)
T PRK13113 171 ---SGFVY---YVSITGITG--AAAAQAADVAPEVARIKAAT---DLPVIVGFGITTPEAA-QAIAGVADGCVVGSAIVK 238 (263)
T ss_pred ---CCCEE---EEECCCCCC--CCCCCHHHHHHHHHHHHHCC---CCCEEEECCCCCHHHH-HHHHCCCCEEEECHHHHH
T ss_conf ---98489---983455668--77554377999999998547---9988998378998999-999733999998689999
Q ss_pred --CCCCCHHHHHHHHHHC
Q ss_conf --5888989999999982
Q gi|254780485|r 305 --AKNPSYNKDTILFNRL 320 (328)
Q Consensus 305 --~~g~~~~~~~~~i~~~ 320 (328)
..|.+.++..++++++
T Consensus 239 ~i~e~~~~~~~~~~v~~l 256 (263)
T PRK13113 239 LIGEGRPVAEVLAFVATL 256 (263)
T ss_pred HHHHCCCHHHHHHHHHHH
T ss_conf 998289989999999999
No 252
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=65.35 E-value=10 Score=17.81 Aligned_cols=178 Identities=12% Similarity=0.137 Sum_probs=86.1
Q ss_pred HHHHHHH-CCCEEEEEECC--CCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC--C
Q ss_conf 9999996-49838997303--6888744289999988762-136883241025699999998741576069751343--7
Q gi|254780485|r 96 EAKNAKE-NGATRYCMGAA--WREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT--S 169 (328)
Q Consensus 96 ~a~~~~~-~G~~~~~l~~~--~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let--~ 169 (328)
.++...+ .|++++|++-- -........+ +++.+ +...+.+.+.-|..+.+..+++.++|++++.++-.. .
T Consensus 36 ~~~~~~~~~Ga~~lHvVDLdgA~~g~~~n~~----~I~~i~~~~~~~iqvGGGIRs~e~i~~~l~~G~~rViigT~a~~~ 111 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREFD----YIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD 111 (234)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCHHH----HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 9999998389988999978764689743799----999998437986798465475999999997689999988813028
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC
Q ss_conf 777320588889899999999999879855770786--68-989999999999997408888602054112048741244
Q gi|254780485|r 170 ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328)
|++..++..... .++ -+++..--+-+. |- -.+.-+..+++..+.+++.. .+- ..-+-..|| |.
T Consensus 112 ~~~l~~~~~~f~--~~I-------vv~iD~~~~~v~~~GW~~~s~~~~~d~~~~~~~~g~~--~il-~TdI~rDGt-l~- 177 (234)
T PRK13587 112 TDWLKEMAHTFP--GRI-------YLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLG--GII-YTDIAKDGK-MS- 177 (234)
T ss_pred HHHHHHHHHHCC--CCE-------EEEEECCCCEEEECCCCEECCCCHHHHHHHHHHCCCC--EEE-EECCCCCCC-CC-
T ss_conf 699999998666--776-------8712023854544575142586799999999743987--899-840266574-55-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECC
Q ss_conf 568798999999999999686872142311565165689999980998899778
Q gi|254780485|r 247 NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD 300 (328)
Q Consensus 247 ~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~ 300 (328)
.++ .+.++-++ + .++..+.+++|- +-..+..++ -..|+++.++|-
T Consensus 178 --G~n-~el~~~i~--~--~~~~pvIaSGGv-~sl~Di~~L-~~~gv~GvIvGk 222 (234)
T PRK13587 178 --GPN-FELTGQLV--K--ATTIPVIASGGI-RHQQDIQRL-ASLNVHAAIIGK 222 (234)
T ss_pred --CCC-HHHHHHHH--H--HCCCCEEEECCC-CCHHHHHHH-HHCCCCEEEEEE
T ss_conf --799-99999999--7--679999998998-999999999-988998999997
No 253
>PRK13127 consensus
Probab=65.01 E-value=10 Score=17.76 Aligned_cols=187 Identities=14% Similarity=0.174 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC---------------CHHHHHHHHHHHCCC-CC-CEEE---EC--C
Q ss_conf 6857999999999964983899730368887-44---------------289999988762136-88-3241---02--5
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPK-ER---------------DLSIIVDMIKGVKSL-GL-ETCM---TL--G 144 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~---------------~~~~~~e~i~~i~~~-~~-~i~~---~~--g 144 (328)
-+.|.-++.++.+.+.|+.-+-++-=.-+|. +. .++.+.++++.++.. .. .+.+ |. .
T Consensus 22 P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlM~Y~N~i~~ 101 (262)
T PRK13127 22 PDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFELVKELRVDSSVPLVLMTYYNPVYR 101 (262)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHH
T ss_conf 99899999999999769999997898888776579999999999976997999999999974569988799966138876
Q ss_pred CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 69999999874157606975134377773205888898999999999998798557707866898999999999999740
Q gi|254780485|r 145 MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 145 ~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
.-.+.-+++.+++|++.+++ |.-.+++.-+..+.+++.|+..- .++- .-|.++|+..+....
T Consensus 102 ~G~e~F~~~~~~~GvdGlIi-------------pDLP~eE~~~~~~~~~~~gi~~I--~lva-Ptt~~~Ri~~i~~~a-- 163 (262)
T PRK13127 102 YGVEKFVKKAAEAGVSGLII-------------PDLPVEEATDLREACKKHGLDLV--FLVA-PTTPEERLKRIDEAS-- 163 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEE-------------CCCCHHHHHHHHHHHHHCCCEEE--EEEC-CCCCHHHHHHHHHCC--
T ss_conf 08999999998759976996-------------69997899999999985583279--9858-999899999998438--
Q ss_pred CCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 8888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 225 STPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 225 ~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
..++- ++...|+.-... .-+.+....+.-.|=..+ +++..|-.--.++........|||++++|..++
T Consensus 164 ---~gFiY---~vs~~GvTG~~~--~~~~~~~~~i~~ik~~t~---~Pv~vGFGI~~~e~v~~~~~~~aDGvIVGSaiv 231 (262)
T PRK13127 164 ---SGFVY---LVSRLGVTGARE--DVEEATFDLLKRARTTCK---NKIAVGFGISKGEHAEELLDAGADGVIVGSALV 231 (262)
T ss_pred ---CCEEE---EEECCCCCCCCC--CCHHHHHHHHHHHHHCCC---CCEEEEEEECCHHHHHHHHHCCCCEEEECHHHH
T ss_conf ---98189---984355568765--552889999999996179---984899334889999999864999999878999
No 254
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=64.46 E-value=4.3 Score=20.27 Aligned_cols=21 Identities=33% Similarity=0.677 Sum_probs=16.2
Q ss_pred EEEEEC-CCCCCCCCCCCCCCC
Q ss_conf 864530-786834232124335
Q gi|254780485|r 56 KLLNIK-TGGCPENCGYCNQSV 76 (328)
Q Consensus 56 ~~in~~-TN~C~~~C~fCaf~~ 76 (328)
..|.++ |+.|..||.-|+|..
T Consensus 76 vLIG~Kasg~~glnCgaCGfes 97 (182)
T COG4739 76 VLIGVKASGTVGLNCGACGFES 97 (182)
T ss_pred EEEEECCCCCCCCCCCCCCCHH
T ss_conf 9997535776544655455156
No 255
>TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413 This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=63.91 E-value=11 Score=17.63 Aligned_cols=148 Identities=17% Similarity=0.290 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHH---HHHHHHHHHHCCCEEEEEEC------------CCCCCCCCCHHHHHHHHH
Q ss_conf 342321243354777564100068579---99999999964983899730------------368887442899999887
Q gi|254780485|r 66 PENCGYCNQSVHNKSKLKASKLINVDQ---VLKEAKNAKENGATRYCMGA------------AWREPKERDLSIIVDMIK 130 (328)
Q Consensus 66 ~~~C~fCaf~~~~~~~~~~~~~~~~Ee---i~~~a~~~~~~G~~~~~l~~------------~~~~~~~~~~~~~~e~i~ 130 (328)
..=-+||++|...++ .+...++.+. +-+.+-+....|.+-+.+-. |-++||.-. .-++|+
T Consensus 437 E~v~~yc~~Y~~~dG--~kt~~Lt~~~k~~~~~~~~~Ma~~GLRv~A~A~~~~~~L~F~GL~G~~DPPRp~---V~~Av~ 511 (856)
T TIGR01522 437 EQVLKYCTYYLKKDG--KKTEELTEEQKEKIQEEAAEMASEGLRVIAFASGTEKDLVFLGLVGINDPPRPD---VKEAVE 511 (856)
T ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCCCCC---CHHHHH
T ss_conf 012334545440578--411577899999998987632006664665652256871576100265922486---268999
Q ss_pred HHCCCCCCEEEECCCCCHHHHHHHHCCCCCEE----EEECCC-CHHHHHCCCC------CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 62136883241025699999998741576069----751343-7777320588------889899999999999879855
Q gi|254780485|r 131 GVKSLGLETCMTLGMLSFEQAQILSKAGLDYY----NHNIDT-SERFYPHVTT------THTFEDRLQTLENVRKSGIKV 199 (328)
Q Consensus 131 ~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~----~~~let-~~~~~~~~~~------~~~~~~~l~~~~~a~~~G~~~ 199 (328)
.+-.-+++|.+=.|....-.+.--+..|+... .-.+++ +..-..++.+ .-|+++.+++++..++.|= +
T Consensus 512 ~L~~gGV~v~MITGDS~~TAv~IA~~lG~~~~~~~~G~~Ld~md~~~L~~~v~~v~vFaRasP~hKmkIv~aLq~~Gd-V 590 (856)
T TIGR01522 512 RLLTGGVRVIMITGDSEETAVSIARRLGMPVKSSKEGEKLDEMDDQQLSEVVDKVAVFARASPEHKMKIVKALQKRGD-V 590 (856)
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC-E
T ss_conf 984289189998187289999998772865799854147763168889865230357630780678999999720898-8
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 77078668989999999999997408
Q gi|254780485|r 200 CCGGILGLGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 200 ~sg~l~G~gEt~eeri~~l~~lr~l~ 225 (328)
-| |=|=|=... -.+.|.|++
T Consensus 591 VA--MTGDGVNDA----pALKlADIG 610 (856)
T TIGR01522 591 VA--MTGDGVNDA----PALKLADIG 610 (856)
T ss_pred EE--ECCCCCCHH----HHHHHHHCC
T ss_conf 98--868795517----774053122
No 256
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=63.56 E-value=11 Score=17.59 Aligned_cols=178 Identities=19% Similarity=0.196 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCC--CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC
Q ss_conf 79999999999649838997303688--8744289999988762136883241025699999998741576069751343
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWRE--PKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT 168 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~--~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let 168 (328)
...++.|+...+.|+.+++++--..- ......+.+.++. ++.++.+.+.-|..+.++.+++-++|++.+.++-++
T Consensus 29 gdP~~~a~~~~~~g~d~i~ivDLda~~~~~~~n~~~i~~i~---~~~~~pi~vgGGIrs~e~~~~~l~~Ga~kvvigs~~ 105 (229)
T pfam00977 29 GDPVELAKRYEEEGADELHFVDLDAAKEGRPVNLDLIEEIA---EEVFIPVQVGGGIRSLEDAERLLSAGADKVIIGTAA 105 (229)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH---HHCCCCEEEECCEEEHHHHHHHHHCCCCEEEECCCH
T ss_conf 99999999999879998999968663026810699999999---866987899645611899999997699899958604
Q ss_pred --CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-------CC-CCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf --77773205888898999999999998798-------55-770786689---899999999999974088886020541
Q gi|254780485|r 169 --SERFYPHVTTTHTFEDRLQTLENVRKSGI-------KV-CCGGILGLG---EMIDDRIDMLLTLANLSTPPESIPINL 235 (328)
Q Consensus 169 --~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-------~~-~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v~~~~ 235 (328)
.|++..++ +...|- .+ .-+.++-++ .+..+..+.+..+.+++. ..+-+ -
T Consensus 106 ~~~~~~~~~~---------------~~~~g~q~iv~siD~k~~~~v~~~~~~~~~~~~~~~~i~~~~~~g~--~eii~-t 167 (229)
T pfam00977 106 VKNPELIKEA---------------AEKFGSQCIVVAIDAKRDGKVAINGWREETGIDAVEWAKKLEELGA--GEILL-T 167 (229)
T ss_pred HHCHHHHHHH---------------HHHCCCCCEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCC--CEEEE-E
T ss_conf 3093789999---------------9980986479999871451799806433567443344567765167--50688-7
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECC
Q ss_conf 12048741244568798999999999999686872142311565165689999980998899778
Q gi|254780485|r 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD 300 (328)
Q Consensus 236 ~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~ 300 (328)
-+-..|| +. .+ ..+.++-++ +. .+..+.+++|- +-..+..+ ....|++++++|.
T Consensus 168 di~~dGt-~~---G~-d~~l~~~i~--~~--~~~pii~~GGv-~~~~di~~-l~~~g~~gvivg~ 221 (229)
T pfam00977 168 DIDRDGT-LS---GP-DLELTRELA--EA--VNIPVIASGGV-GSLEDLKE-LFSEGVDGVIAGS 221 (229)
T ss_pred EECCCCC-CC---CC-CHHHHHHHH--HH--CCCCEEEECCC-CCHHHHHH-HHHCCCCEEEEHH
T ss_conf 7504275-66---68-999999999--76--89989998589-99999999-9987998999857
No 257
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=63.47 E-value=11 Score=17.58 Aligned_cols=194 Identities=16% Similarity=0.218 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCH-HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC
Q ss_conf 79999999999649838997-303688874428-9999988762136883241025699999998741576069751343
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCM-GAAWREPKERDL-SIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT 168 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~-~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let 168 (328)
-..-++++...+.|+.-+++ +..++--+.-.+ -.+++.++...+....+|.-+-. .+..+..+.++|++.+..-.|.
T Consensus 16 ~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~-p~~~i~~fa~agad~It~H~E~ 94 (220)
T COG0036 16 ARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVEN-PDRYIEAFAKAGADIITFHAEA 94 (220)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHCCCEEEEEECC
T ss_conf 679999999997699879996457876787334899999886368973589973289-8999999998199989997127
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCC
Q ss_conf 77773205888898999999999998798557707866898999999999999740888860205411204874124456
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENK 248 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~ 248 (328)
.+- -.+++...++.|.+.+ +.+- -+|+.+-++.++. +++ .|-++-.. || +.+..
T Consensus 95 ~~~-------------~~r~i~~Ik~~G~kaG--v~ln-P~Tp~~~i~~~l~--~vD----~VllMsVn--PG--fgGQ~ 148 (220)
T COG0036 95 TEH-------------IHRTIQLIKELGVKAG--LVLN-PATPLEALEPVLD--DVD----LVLLMSVN--PG--FGGQK 148 (220)
T ss_pred CCC-------------HHHHHHHHHHCCCEEE--EEEC-CCCCHHHHHHHHH--HCC----EEEEEEEC--CC--CCCCC
T ss_conf 768-------------9999999997598577--9978-9997789998986--578----99998577--99--86631
Q ss_pred CCCHHHHHHHHHHHHHHCCC---CCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHH
Q ss_conf 87989999999999996868---72142311565165689999980998899778665158889899999999
Q gi|254780485|r 249 KVDPIEHVRIISVARILMPK---SRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318 (328)
Q Consensus 249 ~~~~~e~lr~iAi~RL~lP~---~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~ 318 (328)
- -.+.+.-+.-.|=+.+. ..|-+-+| +..+....+..+|||-+.+|.++-..+. ..+-++-++
T Consensus 149 F--i~~~l~Ki~~lr~~~~~~~~~~IeVDGG---I~~~t~~~~~~AGad~~VaGSalF~~~d--~~~~i~~~~ 214 (220)
T COG0036 149 F--IPEVLEKIRELRAMIDERLDILIEVDGG---INLETIKQLAAAGADVFVAGSALFGADD--YKATIRELR 214 (220)
T ss_pred C--CHHHHHHHHHHHHHHCCCCCEEEEEECC---CCHHHHHHHHHCCCCEEEEEEEEECCCC--HHHHHHHHH
T ss_conf 4--7999999999999740247759999689---6988899999739999999777867811--999999999
No 258
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IPR010031 This entry identifies a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesising ascorbic acid or a derivative. These include L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by IPR006093 from INTERPRO.; GO: 0016899 oxidoreductase activity acting on the CH-OH group of donors oxygen as acceptor, 0009058 biosynthetic process.
Probab=61.85 E-value=12 Score=17.39 Aligned_cols=135 Identities=17% Similarity=0.156 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC--CHHHHHHHHHHHC------C---CCCCEEEECCCCCHHHHHH
Q ss_conf 000685799999999996498389973036888744--2899999887621------3---6883241025699999998
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER--DLSIIVDMIKGVK------S---LGLETCMTLGMLSFEQAQI 153 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~--~~~~~~e~i~~i~------~---~~~~i~~~~g~~~~~~~~~ 153 (328)
|--.|.||++|....|..++ +.+..|++||.|.+- .-+|++.+=|.-| + ....|.+.+|.+-.+.-..
T Consensus 19 ~qP~s~eevrE~l~~Ar~~~-Kk~~vVG~GHSPSdi~cTdg~l~~ldkmnkV~~fd~~Pelh~~~iTV~AGirlyql~e~ 97 (505)
T TIGR01678 19 YQPKSVEEVREVLADAREAE-KKVKVVGAGHSPSDIVCTDGFLVSLDKMNKVLKFDKEPELHKKDITVEAGIRLYQLQEI 97 (505)
T ss_pred CCCCCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCEECCCHHEECCCCCCEEEECCCCCCCCCCEEHHHHHHHHHHHHH
T ss_conf 48972999999999987469-83899757778232154260210012245101552786632201116552568664589
Q ss_pred HHCCCCCEEEEEC--C----------CC-HHHHHCCCC----------------CCCHHHHHHHHHHHH----HCCCCCC
Q ss_conf 7415760697513--4----------37-777320588----------------889899999999999----8798557
Q gi|254780485|r 154 LSKAGLDYYNHNI--D----------TS-ERFYPHVTT----------------THTFEDRLQTLENVR----KSGIKVC 200 (328)
Q Consensus 154 Lk~aG~~~~~~~l--e----------t~-~~~~~~~~~----------------~~~~~~~l~~~~~a~----~~G~~~~ 200 (328)
|.+.|...-+++- | |+ -.+++.+.+ ..+-+.--++.++|+ .+|+=++
T Consensus 98 L~~~Gys~~~lGsiSe~sVaGiistgtHgss~~Hg~l~~q~v~lti~~adGe~~~cs~e~~~dvF~AA~vslG~lGiIv~ 177 (505)
T TIGR01678 98 LDEKGYSLSNLGSISEVSVAGIISTGTHGSSLKHGVLASQVVALTIMLADGEVLECSEERDKDVFKAARVSLGALGIIVD 177 (505)
T ss_pred HHHCCCCEECCCCCCCCEECCEEECCCCCCCCCCCHHHHEEEEEEEEECCCCEEEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 75248710002210043121155037468765333244033334567047757860220485688898641562478999
Q ss_pred CEEEE----CCCC-----CHHHHHHHHHH
Q ss_conf 70786----6898-----99999999999
Q gi|254780485|r 201 CGGIL----GLGE-----MIDDRIDMLLT 220 (328)
Q Consensus 201 sg~l~----G~gE-----t~eeri~~l~~ 220 (328)
.|+=+ -+.+ |.+|.++.+..
T Consensus 178 ~Ti~vVP~F~l~~T~~v~T~~~ll~~wd~ 206 (505)
T TIGR01678 178 VTIRVVPAFDLKETEEVSTLKELLKDWDS 206 (505)
T ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 98887336555257764108999876200
No 259
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=61.21 E-value=12 Score=17.31 Aligned_cols=205 Identities=19% Similarity=0.168 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 06857999999999964983899730368887442899999887621368832410256999999987415760697513
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
-++.+.+...++.+...|++.+-+-. ++ .+.+.++. ...+.+|+|. .+.+.+-.--+||++.+.++
T Consensus 23 NFd~~~V~~i~~AA~~ggAt~vDIA~---dp------~LV~~v~~--~~~lPiCVSa--Vep~~f~~aV~AGA~lvEIG- 88 (243)
T pfam04481 23 NFNYEQVLKIARASQIAKATYVDIAA---DP------QLVKVVKS--VSNIPICVSA--VEPELLYEAVLAGADLVEIG- 88 (243)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEECC---CH------HHHHHHHH--HCCCCEEEEC--CCHHHHHHHHHHCCCEEEEC-
T ss_conf 26989999999998715997687417---99------99999997--2899858604--79788899998278789864-
Q ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC---CCCE-EECCCEEECCCC
Q ss_conf 437777320588889899999999999879855770786689899999999999974088---8860-205411204874
Q gi|254780485|r 167 DTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLST---PPES-IPINLLIPIPGS 242 (328)
Q Consensus 167 et~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~---~~~~-v~~~~~~p~~gt 242 (328)
-...+|++.+ .-+.++-|+.-+..+++=-.+.-..-+=|.=..++-++....|.+++. +|++ ..-.++ .+|+
T Consensus 89 -NfDsFY~qGr-~f~a~eVL~Lt~~Tr~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~--~~g~ 164 (243)
T pfam04481 89 -NFDSFYKQGR-VLSVCEIIALVKETRKLLPHTPLCVTIPHILKLKEQINLAKQLESLGIDLIQTEGKITSISK--NHCV 164 (243)
T ss_pred -CHHHHHHCCC-EECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCC--CCCH
T ss_conf -5364765476-64499999999999976899844774576356789999999999818877872898777888--8425
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCE-EEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 124456879899999999999968687214-23115651656899999809988997786651588898999999998
Q gi|254780485|r 243 KFEENKKVDPIEHVRIISVARILMPKSRLR-LAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 243 ~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~-i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
+.......+ ...-+.+++|-. .++ +.+| .+..-...+++.+||.++-+|..+-. =.+...|+..+++
T Consensus 165 -~glIekaap-TLAaay~IS~~v----~vPVlcAS--GlS~vT~PmAiaaGAsGVGVGSavn~--Lnd~~aMva~vr~ 232 (243)
T pfam04481 165 -NDLIEKSAS-TLASTYEISKHV----QLPVICAS--GLSDVTVPLAFSYGASGIGIGSAVSK--LNDIEKMVNYISE 232 (243)
T ss_pred -HHHHHHHHH-HHHHHHHHHHCC----CCCEEECC--CCCHHHHHHHHHCCCCCCCHHHHHHH--CCCHHHHHHHHHH
T ss_conf -777988758-899999998617----87667546--76421478899748771006577650--0249999999999
No 260
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=60.97 E-value=8.8 Score=18.19 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=46.2
Q ss_pred EEEEEECCCCCCCC----------CCHHHHHHHHH-HHCCC--CCCEEEEC---C-CCCHHHHHHHHCCCCCEEEEECCC
Q ss_conf 38997303688874----------42899999887-62136--88324102---5-699999998741576069751343
Q gi|254780485|r 106 TRYCMGAAWREPKE----------RDLSIIVDMIK-GVKSL--GLETCMTL---G-MLSFEQAQILSKAGLDYYNHNIDT 168 (328)
Q Consensus 106 ~~~~l~~~~~~~~~----------~~~~~~~e~i~-~i~~~--~~~i~~~~---g-~~~~~~~~~Lk~aG~~~~~~~let 168 (328)
-||.|.+|-+.+.. +..+.+++.+. .|.+. .+...+++ | .+..+.++.|++.-.|.=.++.|-
T Consensus 15 GhFlLsSG~hS~~flQ~~~ll~~P~~~~~lg~~LA~~i~~~~~~~d~ivsPA~GGv~~~Ye~AR~L~etlPd~R~iF~Er 94 (205)
T TIGR01367 15 GHFLLSSGKHSPYFLQSAKLLEDPELAEKLGEELAKKILKYKLEVDVIVSPAMGGVILGYEVARALSETLPDVRSIFAER 94 (205)
T ss_pred CCEEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 71224057614236656567616368999999999999982787015864730004688899987410068885267776
Q ss_pred -------CHHHHHC------------CCCCCCHHHHHHHHHHHHHCCCCC-CCEEE
Q ss_conf -------7777320------------588889899999999999879855-77078
Q gi|254780485|r 169 -------SERFYPH------------VTTTHTFEDRLQTLENVRKSGIKV-CCGGI 204 (328)
Q Consensus 169 -------~~~~~~~------------~~~~~~~~~~l~~~~~a~~~G~~~-~sg~l 204 (328)
-++-|.- +-|+.|. +++++..++.|-.+ +.+-|
T Consensus 95 ~gsg~mkLRrgF~v~pGek~v~vEDvvTTGGS~---~e~~~~i~~~GG~vvg~a~i 147 (205)
T TIGR01367 95 EGSGGMKLRRGFEVKPGEKVVVVEDVVTTGGSL---LEAIKAIEELGGQVVGLACI 147 (205)
T ss_pred ECCCCCEECCCEEECCCCEEEEEEEEECCCHHH---HHHHHHHHHCCCCEEEEEEH
T ss_conf 078752011120336997799996211047448---99999998579827984211
No 261
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=60.66 E-value=12 Score=17.25 Aligned_cols=188 Identities=19% Similarity=0.232 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH-HHHCCCC-CEEE
Q ss_conf 068579999999999649838997303688-874428999998876213688324102569999999-8741576-0697
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWRE-PKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQ-ILSKAGL-DYYN 163 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~-~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~-~Lk~aG~-~~~~ 163 (328)
--+.+.+.+.|+.-.+.|+.-+-+-.|... +....+.++++.+...- ...+++ ...+.+.++ .|+...- ..++
T Consensus 21 ~~d~~~i~~~A~~Q~eaGA~~LDVN~g~~~~de~~~m~~~v~~iq~~~--~~Pl~i--DS~~~~aiEaaLk~~~Gr~iIN 96 (268)
T PRK07535 21 EKDAAFIQKLALRQVEAGANYLDVNAGTAVEEEPETMEWLVETVQEVV--DVPLCI--DSPNPEAIEAGLKVAKGRPLIN 96 (268)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCCEEE--CCCCHHHHHHHHHHCCCCCEEE
T ss_conf 679899999999999849998996089877468999999999997338--999676--1898999999999779997266
Q ss_pred -EECCCCHHHHHCCCCCCCHHHHHH-HHHHHHHCCCCCCCEEE--ECCCCCHHHHHHHHHHHHHC----CCCCCEEECCC
Q ss_conf -513437777320588889899999-99999987985577078--66898999999999999740----88886020541
Q gi|254780485|r 164 -HNIDTSERFYPHVTTTHTFEDRLQ-TLENVRKSGIKVCCGGI--LGLGEMIDDRIDMLLTLANL----STPPESIPINL 235 (328)
Q Consensus 164 -~~let~~~~~~~~~~~~~~~~~l~-~~~~a~~~G~~~~sg~l--~G~gEt~eeri~~l~~lr~l----~~~~~~v~~~~ 235 (328)
+++| +++++ ++..|++.|-.+-+-.+ =|+-+|.++|++...++-+. +..++-+.+=+
T Consensus 97 Sis~e---------------~er~~~i~pLakkyga~vI~L~~de~Gip~tae~R~~ia~~i~~~a~~~Gi~~edi~~Dp 161 (268)
T PRK07535 97 SVSAE---------------EERLEAVLPLVKKYNAPVVALTMDDTGIPKDAEVRLAVAKKLVEKAADFGIPPDDIYIDP 161 (268)
T ss_pred EECCC---------------HHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEC
T ss_conf 00388---------------056999999999849979999428999999999999999999999998599889988845
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEH--------HHHHCHHHHHHHHHHCCCEEEE
Q ss_conf 12048741244568798999999999999686872142311--------5651656899999809988997
Q gi|254780485|r 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAG--------RAMMSDELQALCFFSGANSIFV 298 (328)
Q Consensus 236 ~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~--------~~~~~~~~~~~~L~~GaN~~~~ 298 (328)
++..-+| .+-...+.|.++...|-.+|.+.+...-| |..+..-+-.+++.+|-|+-++
T Consensus 162 Lv~~i~t-----~~~~~~~~leair~ik~~~P~v~t~~GlSNiSFGlP~R~~lNs~FL~~a~~~GLd~aI~ 227 (268)
T PRK07535 162 LVLPLSA-----AQTAGVEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAIL 227 (268)
T ss_pred CCCEEEC-----CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 5121006-----80789999999999998787777524540011475338999999999999869984645
No 262
>PRK07328 histidinol-phosphatase; Provisional
Probab=60.00 E-value=13 Score=17.17 Aligned_cols=198 Identities=12% Similarity=0.082 Sum_probs=87.8
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCC---C----------CCCHHHHHHHHHHHCCCC--CCE--EEECCCC--CHHHHHH-
Q ss_conf 999999996498389973036888---7----------442899999887621368--832--4102569--9999998-
Q gi|254780485|r 94 LKEAKNAKENGATRYCMGAAWREP---K----------ERDLSIIVDMIKGVKSLG--LET--CMTLGML--SFEQAQI- 153 (328)
Q Consensus 94 ~~~a~~~~~~G~~~~~l~~~~~~~---~----------~~~~~~~~e~i~~i~~~~--~~i--~~~~g~~--~~~~~~~- 153 (328)
.+.++.+.++|+..+++.-...-. + ..+++.|.+.++.+++.. +.| .+.++.. .++.+..
T Consensus 20 ee~v~~Ai~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~i~I~~GiE~d~~~~~~~~~~~~ 99 (268)
T PRK07328 20 EEYVEEARAKGLAEIGFTDHLPMYWLPPEWYDPPWAMRLEELPAYVSEVLRVRERFPDLPVRLGLEADFHPGTEEFLARL 99 (268)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHH
T ss_conf 99999999879998997279997778744458543456888999999999999872599367555346675539999999
Q ss_pred HHCCCCCEEEEE---CCC----CHHHHHCCC---CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 741576069751---343----777732058---8889899999999999879855770786689899999999999974
Q gi|254780485|r 154 LSKAGLDYYNHN---IDT----SERFYPHVT---TTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLAN 223 (328)
Q Consensus 154 Lk~aG~~~~~~~---let----~~~~~~~~~---~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~ 223 (328)
+++.+.|.+... ++. .+....... ...-+++.++.+..+.+.|..- ++||- ..++.
T Consensus 100 l~~~~~D~vigSvH~i~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~fd----vlgH~----------Dli~~ 165 (268)
T PRK07328 100 LRRYPFDYVIGSVHYLGAWGFDNPDLVAEYARRDLDELYRRYFALVEQAARSGLFD----AIGHL----------DLPKK 165 (268)
T ss_pred HHHCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC----EECCC----------CHHHH
T ss_conf 97489974888775148877778778888730589999999999999998658988----82553----------47866
Q ss_pred CCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHH-----HCHHHHHHHHHHCCCEEEE
Q ss_conf 08888602054112048741244568798999999999999686872142311565-----1656899999809988997
Q gi|254780485|r 224 LSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAM-----MSDELQALCFFSGANSIFV 298 (328)
Q Consensus 224 l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~-----~~~~~~~~~L~~GaN~~~~ 298 (328)
.+. .+.... . .-.++.++.++-....+ .||-++.|-. -.+++-+++...|+-- .+
T Consensus 166 ~~~------------~~~~~~---~-~~~~~il~~~~~~g~~l---EiNt~glr~~~~e~yP~~~il~~~~~~G~~i-t~ 225 (268)
T PRK07328 166 FGH------------RPTGDL---T-ELYEPALDVIARAGLCL---DVNTAGLRKPAAEVYPAPALLRAARERGIPV-VL 225 (268)
T ss_pred CCC------------CCCHHH---H-HHHHHHHHHHHHCCCEE---EEECCCCCCCCCCCCCHHHHHHHHHHCCCEE-EE
T ss_conf 489------------985246---6-99999999999729779---9877867788888886299999999879979-99
Q ss_pred CC-EE-ECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 78-66-51588898999999998298532
Q gi|254780485|r 299 GD-TL-LTAKNPSYNKDTILFNRLGLIPD 325 (328)
Q Consensus 299 g~-~~-~t~~g~~~~~~~~~i~~~G~~P~ 325 (328)
|. -- ...=|...++..++++++||+..
T Consensus 226 gSDAH~~~~vg~~f~~a~~~lk~~Gf~~~ 254 (268)
T PRK07328 226 GSDAHRPEEVGFGFAEAVALLKEAGYREV 254 (268)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 05989888988689999999998699889
No 263
>PTZ00124 adenosine deaminase; Provisional
Probab=59.76 E-value=13 Score=17.15 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCCCCCEE-EECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999998798557707-866898999999999999740888860205411204874124456879899999999999
Q gi|254780485|r 185 RLQTLENVRKSGIKVCCGG-ILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 185 ~l~~~~~a~~~G~~~~sg~-l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~R 263 (328)
-.++.+.|++.|+++|.+. =.|-.+..+++.+.+..+.- +...|++.+ ....+.++.++--+
T Consensus 208 f~~af~~Ar~~Gl~~T~HAGE~~~p~~i~~v~~ai~~l~a-~RIGHGv~~----------------~~Dp~L~~~l~e~~ 270 (362)
T PTZ00124 208 FKDIFDRLREAGVNLSVHAGEDVTPPNLNELYAAILDLGV-KRIGHGIRV----------------AESQELIDRVKEKD 270 (362)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCC-CCCCCCEEC----------------CCCHHHHHHHHHCC
T ss_conf 8999999998699543556755785459999999998097-043575340----------------77989999998659
Q ss_pred HH---CCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEE
Q ss_conf 96---86872142311565165689999980998899
Q gi|254780485|r 264 IL---MPKSRLRLAAGRAMMSDELQALCFFSGANSIF 297 (328)
Q Consensus 264 L~---lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~ 297 (328)
|. +|..++...+ ..++...=-...+.+|++.++
T Consensus 271 I~LEvCPtSNv~t~~-v~~~~~HPi~~l~~~G~~vti 306 (362)
T PTZ00124 271 ILLEVCPISNVLLNN-SKSMDTHPIRKLYDAGVKVSV 306 (362)
T ss_pred CEEEECCCCCCCCCC-CCCCCCCHHHHHHHCCCEEEE
T ss_conf 548986765533456-698321719999978996999
No 264
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.71 E-value=13 Score=17.14 Aligned_cols=67 Identities=12% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC---CEEEECCCCCHHHHHHHHCCCCCEE
Q ss_conf 68579999999999649838997303688874428999998876213688---3241025699999998741576069
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL---ETCMTLGMLSFEQAQILSKAGLDYY 162 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~---~i~~~~g~~~~~~~~~Lk~aG~~~~ 162 (328)
.++|++.+.|.+ .+..-+.+. +.... ..+.+-+++..+++.+. .+. --|....+.+..|+++|++.+
T Consensus 37 ~s~eeiv~~A~~---e~ad~IglS-sL~g~---h~~~~~~l~~~L~e~G~~di~v~-vGG~Ip~~d~~~l~~~Gv~~v 106 (122)
T cd02071 37 QTPEEIVEAAIQ---EDVDVIGLS-SLSGG---HMTLFPEVIELLRELGAGDILVV-GGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred CCHHHHHHHHHH---CCCCEEEEE-CCCCC---HHHHHHHHHHHHHHCCCCCCEEE-EECCCCHHHHHHHHHCCCCEE
T ss_conf 899999999997---399899996-46554---47899999999997699984699-945649899999997799889
No 265
>PRK11059 regulatory protein CsrD; Provisional
Probab=59.43 E-value=13 Score=17.11 Aligned_cols=12 Identities=25% Similarity=0.160 Sum_probs=5.2
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999997408
Q gi|254780485|r 214 RIDMLLTLANLS 225 (328)
Q Consensus 214 ri~~l~~lr~l~ 225 (328)
....+..|++++
T Consensus 537 ~~~~l~~L~~lG 548 (642)
T PRK11059 537 LRPVLRMLRGLG 548 (642)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999769
No 266
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=59.38 E-value=13 Score=17.11 Aligned_cols=185 Identities=11% Similarity=0.021 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC
Q ss_conf 85799999999996498389973036888744289999988762136883241025699999998741576069751343
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT 168 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let 168 (328)
+.++. .......|+.+.++|..- ....+-.++++.++......--+.+-....+.++++.|..+|+..+-+++-.
T Consensus 29 ~~~dl---~~~~~~~Gi~r~VlVQ~s--~~g~Dn~~ll~al~~~~~~~~~v~v~~~~~~d~~l~~l~~~GvrGvR~n~~~ 103 (263)
T cd01311 29 GIDDL---RALRSTLGIDRVVIVQAS--IYGADNSNLLDALASNGKARGGATVDPRTTTDAELKEMHDAGVRGVRFNFLF 103 (263)
T ss_pred CHHHH---HHHHHHHCCCEEEEECCC--CCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEECCC
T ss_conf 99999---999998099659997888--7745389999999856994799998079899799999876589713772567
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCC
Q ss_conf 77773205888898999999999998798557707866898999999999999740888860205411204874124456
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENK 248 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~ 248 (328)
....+.++-....++++++|+.+...+ ...+..+++..++.+.. ...+-+-|-|-....
T Consensus 104 --------~~~~~~~~~~~~~~ri~~~gw~~~l~~------~~~~l~~~~~~l~~~p~-------~vViDH~g~p~~~~g 162 (263)
T cd01311 104 --------GGVDNKDELDEIAKRAAELGWHVQVYF------DAVDLPALLPFLQKLPV-------AVVIDHFGRPDVTKG 162 (263)
T ss_pred --------CCCCCHHHHHHHHHHHHHCCCCEEEEC------CCCCHHHHHHHHHHCCC-------CEEEECCCCCCCCCC
T ss_conf --------777898999999999987498645203------71106999999997899-------899856778898878
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHC---------HHHHHHHHHHCCCEEEECCEEE
Q ss_conf 879899999999999968687214231156516---------5689999980998899778665
Q gi|254780485|r 249 KVDPIEHVRIISVARILMPKSRLRLAAGRAMMS---------DELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 249 ~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~---------~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
..+ ..+-.+++++| .|++.+++|+ ..+.. ....+..+.+|.+-+|-|.-.-
T Consensus 163 ~~~-~~~~~l~~L~~--~~~v~vKlSg-~~r~s~~~~~~~d~~p~~~~l~~~gp~RlmWGSDWP 222 (263)
T cd01311 163 VDG-AEFAALLKLIE--EGNVWVKVSG-PYRLSVKQEAYADVIAFARQIVAAAPDRLVWGTDWP 222 (263)
T ss_pred CCC-HHHHHHHHHHH--CCCEEEEECC-CEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 779-88999999996--6986999645-455158898866899999999986999489979999
No 267
>pfam00113 Enolase_C Enolase, C-terminal TIM barrel domain.
Probab=59.24 E-value=13 Score=17.09 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECC--CCCHHHHHHHH
Q ss_conf 989999999999987985577078668--98999999999
Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKVCCGGILGL--GEMIDDRIDML 218 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~G~~~~sg~l~G~--gEt~eeri~~l 218 (328)
+..+-+++++.|++.|+.+ +++| |||....+.||
T Consensus 213 Tlset~e~~~~ak~~g~~~----ivShRSGETeD~~iaDL 248 (296)
T pfam00113 213 SVTESLAAVKMAKDAGWGV----MVSHRSGETEDTFIADL 248 (296)
T ss_pred HHHHHHHHHHHHHHCCCEE----EEECCCCCCCCCHHHHH
T ss_conf 1999999999999869649----98669887765229998
No 268
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=58.74 E-value=13 Score=17.03 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=6.5
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999982985
Q gi|254780485|r 311 NKDTILFNRLGLI 323 (328)
Q Consensus 311 ~~~~~~i~~~G~~ 323 (328)
.+.++-++++|+.
T Consensus 681 ~~~l~~lr~~G~~ 693 (799)
T PRK11359 681 FKRIQILRDMGVG 693 (799)
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999978998
No 269
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=58.30 E-value=13 Score=16.99 Aligned_cols=179 Identities=13% Similarity=0.124 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCC--------HHHHHHHHCCCC
Q ss_conf 685799999999996498389973036888744289999988762136883241025699--------999998741576
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLS--------FEQAQILSKAGL 159 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~--------~~~~~~Lk~aG~ 159 (328)
.+.+++.+.++++.+.|+.-+|+.. ..+....+. ++...+.+++.++... ..+.+...+.|+
T Consensus 10 ~t~~~i~~~~~~a~~~~~~av~v~p-------~~v~~~~~~---l~~~~~~v~~vv~fp~g~~~~~~k~~e~~~ai~~GA 79 (201)
T cd00945 10 ATLEDIAKLCDEAIEYGFAAVCVNP-------GYVRLAADA---LAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGA 79 (201)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECH-------HHHHHHHHH---CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999999999862982999889-------999999998---089998389995889999977799999999999099
Q ss_pred CEEEEECCCCHHHHHCCCCCCCHHHHHH----HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 0697513437777320588889899999----999999879855770786689899999999999974088886020541
Q gi|254780485|r 160 DYYNHNIDTSERFYPHVTTTHTFEDRLQ----TLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINL 235 (328)
Q Consensus 160 ~~~~~~let~~~~~~~~~~~~~~~~~l~----~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~ 235 (328)
+.+-+.+... ... ...|+.-++ +.+.+ +.|+++-.-+-.+.-.+.++.........+.+. ++|-
T Consensus 80 deid~v~~~~--~~~----~~~~~~~~~ei~~v~~~~-~~g~~~kvi~e~~~l~~~~~i~~a~~~~~~~Ga--dfvK--- 147 (201)
T cd00945 80 DEIDVVINIG--SLK----EGDWEEVLEEIAAVVEAA-DGGLPLKVILETRGLKTADEIAKAARIAAEAGA--DFIK--- 147 (201)
T ss_pred CEEEEECCHH--HHH----CCCHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CEEE---
T ss_conf 9899740567--775----668899999999999973-579837999616778999999999999998099--8798---
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEE
Q ss_conf 120487412445687989999999999996868721423115651656899999809988997
Q gi|254780485|r 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFV 298 (328)
Q Consensus 236 ~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~ 298 (328)
..|.+.. ...+.+....+....+ ++..|..++|-- ..+.....+.+||+.+-+
T Consensus 148 ----tstG~~~-~~at~~~v~~m~~~~~---~~~~vk~sGGi~--~~~~a~~~l~aGa~~igt 200 (201)
T cd00945 148 ----TSTGFGG-GGATVEDVKLMKEAVG---GRVGVKAAGGIK--TLEDALAAIEAGADGIGT 200 (201)
T ss_pred ----ECCCCCC-CCCCHHHHHHHHHHHC---CCCEEECCCCCC--CHHHHHHHHHHCCCEEEC
T ss_conf ----5588788-9899999999999828---786386358979--999999999828653537
No 270
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=57.39 E-value=14 Score=16.89 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=6.8
Q ss_pred CHHHHHHHHH-HHHHCCC
Q ss_conf 9899999999-9998798
Q gi|254780485|r 181 TFEDRLQTLE-NVRKSGI 197 (328)
Q Consensus 181 ~~~~~l~~~~-~a~~~G~ 197 (328)
.+++|.+.++ .+.++|+
T Consensus 75 ka~rR~~~lke~l~elgi 92 (132)
T COG1908 75 KAKRRMELLKELLKELGI 92 (132)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 799999999999999488
No 271
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=57.14 E-value=12 Score=17.21 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 410006857999999999964983899730368887442899999887621
Q gi|254780485|r 83 KASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK 133 (328)
Q Consensus 83 ~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~ 133 (328)
..|.+. +|.+.-+.. +...|++=.-+.+.-+ ...+++.+-++++...
T Consensus 30 SlYPlV-DDKl~TK~~-A~AaGi~VPelyGVI~--~q~ev~~~~~ivkdh~ 76 (320)
T TIGR02291 30 SLYPLV-DDKLKTKIL-AIAAGIAVPELYGVIE--IQKEVKSLDDIVKDHE 76 (320)
T ss_pred CCCCCC-CCHHHHHHH-HHHCCCCCCHHCCCCC--CHHHHHHHHHHHCCCC
T ss_conf 478720-313678899-8733671101301002--3466543466627889
No 272
>PRK08104 consensus
Probab=56.99 E-value=14 Score=16.84 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEE
Q ss_conf 0006857999999999964983899730368887442899999887621368832410256-999999987415760697
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~ 163 (328)
-+..+.|+....++.+.+.|++-+-+.. +.+. -.+.|+.+++..+.+.+-+|. ++.++++...++|++.+.
T Consensus 21 ir~~~~~~a~~la~al~~gGi~~iEiTl--rt~~------a~~~I~~l~~~~p~~~vGaGTV~~~e~~~~ai~aGA~FiV 92 (212)
T PRK08104 21 IVINKLEHAVPLAKALVAGGVRVLEVTL--RTPC------ALEAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAI 92 (212)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEEC--CCCH------HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 9779999999999999987998899968--8814------9999999998689856854202679999999985999998
Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 51343777732058888989999999999987985577078668989999999999997408888602054112048741
Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
+| ..+ -++++.+++.+++.-.|.+ |+-|...-+ +.+. ..+- |+|..
T Consensus 93 -----SP--------~~~----~~v~~~a~~~~i~~iPGv~-----TpsEi~~A~----~~G~--~~vK---lFPA~--- 138 (212)
T PRK08104 93 -----SP--------GLT----EELLKAATEGTIPLIPGIS-----TVSELMLGM----DYGL--TEFK---FFPAE--- 138 (212)
T ss_pred -----CC--------CCC----HHHHHHHHHCCCCEECCCC-----CHHHHHHHH----HCCC--CEEE---ECCCC---
T ss_conf -----48--------999----9999999982997656769-----999999999----8799--9799---78762---
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECC---CCCCHHHHHHHHHH
Q ss_conf 24456879899999999999968687214231156516568999998099889977866515---88898999999998
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTA---KNPSYNKDTILFNR 319 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~---~g~~~~~~~~~i~~ 319 (328)
...+..++|-+ +=-+|+..+.-++| +..+...--|.+|+-....|..+... .....+++.+..++
T Consensus 139 -----~~gG~~~lkal---~~p~p~~~f~ptGG---V~~~N~~~yl~~~~v~~vgGS~l~~~~~i~~~d~~~I~~~a~~ 206 (212)
T PRK08104 139 -----ANGGVKALQAI---SGPFSQIRFCPTGG---ITPANYRDYLALKSVLCIGGSWLVPADALEAGDWDRITKLAKE 206 (212)
T ss_pred -----CCCCHHHHHHH---HCCCCCCEEEECCC---CCHHHHHHHHHCCCEEEEECHHHCCHHHHHCCCHHHHHHHHHH
T ss_conf -----13749999998---55589981896489---8988999998079879998835389999874899999999999
No 273
>PTZ00081 enolase (2-phospho-D-glycerate hydrolase); Provisional
Probab=56.38 E-value=14 Score=16.78 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-HHHHHCHHHHHHHHHHCCCEEEECCEEECCCC---CCHHHHHHHHHHC
Q ss_conf 4456879899999999999968687214231-15651656899999809988997786651588---8989999999982
Q gi|254780485|r 245 EENKKVDPIEHVRIISVARILMPKSRLRLAA-GRAMMSDELQALCFFSGANSIFVGDTLLTAKN---PSYNKDTILFNRL 320 (328)
Q Consensus 245 ~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~-~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g---~~~~~~~~~i~~~ 320 (328)
+.....|..|.+..+..+|=.-=.+ .+|. +-||...-...+|.-.||.-+-+|.- .+| ...++.++.=+++
T Consensus 352 K~NQiGTlset~eai~~A~~~g~~~--ivShRSGETeD~~iaDLAVg~ga~~iK~G~~---~r~ER~aKyNrLLrIeeeL 426 (442)
T PTZ00081 352 KVNQIGSITEAIEACKLCMKNGWGV--MVSHRSGETEDTFIADLVVGLGTGQIKTGAP---CRSERNAKYNQLLRIEEEL 426 (442)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEE--EEECCCCCCCCCHHHHHHHHCCCCCEECCCC---CCHHHHHHHHHHHHHHHHH
T ss_conf 3323220999999999999879879--9957988766300888777448982033898---4178899999999999986
Q ss_pred CCC
Q ss_conf 985
Q gi|254780485|r 321 GLI 323 (328)
Q Consensus 321 G~~ 323 (328)
|-.
T Consensus 427 g~~ 429 (442)
T PTZ00081 427 GSR 429 (442)
T ss_pred CCC
T ss_conf 545
No 274
>pfam07085 DRTGG DRTGG domain. This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.).
Probab=55.41 E-value=15 Score=16.67 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 6872142311565165689999980998899778665158889899999999829853247
Q gi|254780485|r 267 PKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 267 P~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328)
|+..+-+.+-|+ +.+..++.+|+.+++. |.+....++..+++++.| .|.++
T Consensus 40 ~g~lvI~~gdR~----di~~~a~~~~~~~iIl-----Tgg~~p~~~v~~la~~~~-ipii~ 90 (105)
T pfam07085 40 PGDLVITPGDRE----DIQLAALLAGIAGLIL-----TGGFEPSEEVLKLAEEAG-LPVLS 90 (105)
T ss_pred CCCEEEEECCCH----HHHHHHHHHCCCEEEE-----ECCCCCCHHHHHHHHHCC-CEEEE
T ss_conf 897999927968----9999999824878999-----489898999999998779-83999
No 275
>pfam00490 ALAD Delta-aminolevulinic acid dehydratase.
Probab=54.90 E-value=15 Score=16.62 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---------CHHHHHHHHHHHCCCCCCEEE
Q ss_conf 000685799999999996498389973036888744---------289999988762136883241
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER---------DLSIIVDMIKGVKSLGLETCM 141 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~---------~~~~~~e~i~~i~~~~~~i~~ 141 (328)
-+..+.+.++++++.+.+.|++-+.+-.... +..+ +-..+..+++.+|+.++.+.+
T Consensus 51 i~R~sid~l~~~v~~~~~lGI~av~LFpvi~-~~~Kd~~gseA~n~~~lv~raIr~iK~~fpdl~v 115 (322)
T pfam00490 51 VYRLSVDLLVKEVEEAVELGIPAVILFGVID-PELKDEDGSEAYNPDGLVQRAIRAIKEAFPDLVV 115 (322)
T ss_pred CEEECHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 5144899999999999977998799844586-0238955361248742899999999986897067
No 276
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=54.34 E-value=15 Score=16.56 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEE
Q ss_conf 9999988762136883241025699999998741576069
Q gi|254780485|r 123 SIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYY 162 (328)
Q Consensus 123 ~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~ 162 (328)
+.-.++++.+++.+|++.+-+-..+..+..+|+++|++.+
T Consensus 475 ~~~~~iv~~~r~~~P~l~IiaRard~~~~~~L~~~Ga~~v 514 (615)
T PRK03562 475 QTNLQLTELVKEHFPHLQIIARARDVDHYIRLRQAGVEKP 514 (615)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEE
T ss_conf 9999999999975899869998397788999997899989
No 277
>PRK04302 triosephosphate isomerase; Provisional
Probab=54.19 E-value=16 Score=16.55 Aligned_cols=147 Identities=14% Similarity=0.115 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999874157606975134377773205888898999999999998798557707866898999999999999740888
Q gi|254780485|r 148 FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 148 ~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~ 227 (328)
+-....|+++|+..+.++.--.|..|.+ --+.++.+.+.|+.+ ++=.++..+.+. +..+.
T Consensus 75 evS~~mL~d~G~~~vIlGHSERR~~~~E---------~~~~v~~a~~~gl~~----I~Cv~~~~~~~~-----~~~l~-- 134 (223)
T PRK04302 75 HILPEAVKDAGAVGTLLNHSERRLRLAD---------IEAAVERAKELGLES----VVCTNNPETSAA-----AAALG-- 134 (223)
T ss_pred CCCHHHHHHCCCCEEEECCCHHHHHCCC---------HHHHHHHHHHCCCEE----EEECCCHHHHHH-----HHHCC--
T ss_conf 3309999985999999565331000322---------799999999869948----997273998889-----98658--
Q ss_pred CCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC
Q ss_conf 86020541120487412445687989999999999996868721423115651656899999809988997786651588
Q gi|254780485|r 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN 307 (328)
Q Consensus 228 ~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g 307 (328)
+..+..=|..- =||-.. .....+++.-+++...|=.-|++.|-..+ =++-+ +.....+.-|+||.++|+-.+.+..
T Consensus 135 ~~~IAYEPvWA-IGTG~~-as~~~~e~i~~~~~~~~~~~~~i~ILYGG-sV~~~-n~~~~~~~~~vDG~LVGgAsLkA~D 210 (223)
T PRK04302 135 PDAVAVEPPEL-IGTGIP-VSKAKPEVVTGTVEAVRKVNPDVKVLCGA-GISTG-EDVKAALELGADGVLLASGVVKAKD 210 (223)
T ss_pred CCEEEECCHHH-HCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCEEEEC-CCCHH-HHHHHHHCCCCCEEEEEEEEEECCC
T ss_conf 99899888898-448987-66258999999999999647997589978-46878-8999974689985897625666879
Q ss_pred CCHHHHHHHHHH
Q ss_conf 898999999998
Q gi|254780485|r 308 PSYNKDTILFNR 319 (328)
Q Consensus 308 ~~~~~~~~~i~~ 319 (328)
....+.+|++.
T Consensus 211 -p~~~l~~l~~~ 221 (223)
T PRK04302 211 -PEAALRDLVSP 221 (223)
T ss_pred -HHHHHHHHHHH
T ss_conf -99999999975
No 278
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=54.14 E-value=16 Score=16.54 Aligned_cols=84 Identities=15% Similarity=0.050 Sum_probs=48.2
Q ss_pred CCCEEE-ECCCCCHHHHHHHHCCCCCEEEEE--CCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHH
Q ss_conf 883241-025699999998741576069751--34377773205888898999999999998798557707866898999
Q gi|254780485|r 136 GLETCM-TLGMLSFEQAQILSKAGLDYYNHN--IDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMID 212 (328)
Q Consensus 136 ~~~i~~-~~g~~~~~~~~~Lk~aG~~~~~~~--let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~e 212 (328)
+..++. ...+.-+..++.|++.|+..+.+- +-++-.....-....+-+.|.+.+ .+.|+++ ...+-|+||.++
T Consensus 169 ~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasddedswk~il---~~~G~~v-~~~l~GLGE~~~ 244 (265)
T COG4822 169 NVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDEDSWKNIL---EKNGFKV-EVYLHGLGENPA 244 (265)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEEECHHHHHHHCCCCHHHHHHHH---HHCCCEE-EEEEECCCCCHH
T ss_conf 569998247875899999999768764888656886040223211126347899999---8679546-887605777678
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999974
Q gi|254780485|r 213 DRIDMLLTLAN 223 (328)
Q Consensus 213 eri~~l~~lr~ 223 (328)
=+.-.+.+|++
T Consensus 245 iq~ifi~Hik~ 255 (265)
T COG4822 245 IQAIFIDHIKD 255 (265)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 279
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=53.79 E-value=16 Score=16.50 Aligned_cols=183 Identities=15% Similarity=0.203 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCH-HHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9999999999649838997-303688874428-9999988762-136883241025699999998741576069751343
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCM-GAAWREPKERDL-SIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~-~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let 168 (328)
.+-++++...+.|+--+|+ ++-|+.-|.-++ --+++.+|.. -+.++.+|+=+-. .+..+..+.++|++.+..-.|.
T Consensus 13 rLgee~~~v~~AGaD~iH~DVMDGHFVPNlT~Gp~v~~~~r~~g~~~P~DVHLMv~~-pd~~~~~Fa~aGA~~I~vH~Ea 91 (216)
T TIGR01163 13 RLGEEVKAVEEAGADLIHVDVMDGHFVPNLTFGPPVLEALRKYGTKLPIDVHLMVEN-PDRYIEDFAEAGADIITVHAEA 91 (216)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHCCCEEEEECCC
T ss_conf 799999999966997899862479717710027789998874079521266303578-5777889997089989984377
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCC
Q ss_conf 77773205888898999999999998798557707866898999999999999740888860205411204874124456
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENK 248 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~ 248 (328)
+.- -.++++..|+.|.+- |+-+=. .|+-|-++.++.--+ .|-++=-. || |-+++
T Consensus 92 ~~h-------------~~R~l~~Ik~~G~~A--G~v~NP-~TPl~~~~~~L~~~D------~VLlMSVn--PG--FgGQk 145 (216)
T TIGR01163 92 TEH-------------IHRLLQLIKELGAKA--GIVLNP-ATPLEALEYVLEDVD------LVLLMSVN--PG--FGGQK 145 (216)
T ss_pred CCC-------------HHHHHHHHHHCCCCE--EEEECC-CCCHHHHHHHHHHCC------EEEEEEEE--CC--CCCCC
T ss_conf 626-------------799999999718970--688679-999878998987629------89988760--79--98841
Q ss_pred CCCHHHHHHHHHHHHHHCC--C----CCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCC
Q ss_conf 8798999999999999686--8----72142311565165689999980998899778665158
Q gi|254780485|r 249 KVDPIEHVRIISVARILMP--K----SRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAK 306 (328)
Q Consensus 249 ~~~~~e~lr~iAi~RL~lP--~----~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~ 306 (328)
=. .+.+.=|--.|=|.+ . ..|-+=+ .+..+.....-.||||...+|.++=.++
T Consensus 146 FI--P~~~~Kir~~R~~id~~~~~~~~~ieVDG---Gv~~~ni~~~~~AGAD~~VaGSaiF~~~ 204 (216)
T TIGR01163 146 FI--PETLEKIRELRKMIDKLELGLSILIEVDG---GVNEDNIAEVAEAGADILVAGSAIFGAD 204 (216)
T ss_pred CH--HHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCCHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf 10--57899999999999860279955899717---9897679999975898999831020888
No 280
>PRK13131 consensus
Probab=53.29 E-value=16 Score=16.45 Aligned_cols=186 Identities=13% Similarity=0.125 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC--------------CHHHHHHHHHHHCCCCCCEEE-ECCCC------
Q ss_conf 857999999999964983899730368887-44--------------289999988762136883241-02569------
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPK-ER--------------DLSIIVDMIKGVKSLGLETCM-TLGML------ 146 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~--------------~~~~~~e~i~~i~~~~~~i~~-~~g~~------ 146 (328)
+.|.-++.++...+.|+.-+-++--.-+|. +. ......++++.+++....+-+ -.+..
T Consensus 23 ~~e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGpvIQ~a~~rAL~~g~~~~~~~~~~~~r~~~~~~pivlM~Y~N~i~~y 102 (257)
T PRK13131 23 NYELSFEIIKTLIISGVSALELGFAFSDPVADGITIQASHLRALKHASMAKNFQLLKKIRDYNHHIPIGLLAYANLIFSY 102 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
T ss_conf 98899999999997799999978998885545599999999999789889999999998704999888999276899985
Q ss_pred -CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf -9999998741576069751343777732058888989999999999987985577078668989999999999997408
Q gi|254780485|r 147 -SFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 147 -~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~ 225 (328)
.+.-+++.+++|++.+.+ |.-.+++.-+..+.+++.|+..- .++-. -|.++|++.+....+
T Consensus 103 G~e~F~~~~~~~GvdGvIi-------------pDLP~eE~~~~~~~~~~~~l~~I--~lvaP-tt~~~Ri~~i~~~s~-- 164 (257)
T PRK13131 103 GVDGFYAQAKECGVDSVLI-------------ADMPLIEKELVIKSAQKHQIKQI--FIASP-NASVKDLEQVATHSQ-- 164 (257)
T ss_pred CHHHHHHHHHHCCCCCEEC-------------CCCCHHHHHHHHHHHHHCCCCEE--EEECC-CCCHHHHHHHHHCCC--
T ss_conf 7999999998659985655-------------89996788999999997798479--97289-998899999983589--
Q ss_pred CCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 226 TPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 226 ~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
.++ ..+...|+.-.... -+.+....+.-.|-.- .+++..|-.--.++........|||++++|..++
T Consensus 165 ---GFi---Y~vs~~GvTG~~~~--~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e~v~~~~~~gaDGvIVGSaiV 231 (257)
T PRK13131 165 ---GYI---YTLARSGVTGASHT--LENDASAIIKTLKTFS---PTPALLGFGISKKEHITNAKGMGADGVICGSALV 231 (257)
T ss_pred ---CEE---EEEECCCCCCCCCC--CCHHHHHHHHHHHHCC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf ---749---99845767798643--4076999999999668---9987998057988999999855999999878999
No 281
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=53.09 E-value=10 Score=17.84 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=26.7
Q ss_pred HHHHHHHH-HCCCEEEECCEEECCCCCCHHHHHHHHHHCCCC
Q ss_conf 68999998-099889977866515888989999999982985
Q gi|254780485|r 283 ELQALCFF-SGANSIFVGDTLLTAKNPSYNKDTILFNRLGLI 323 (328)
Q Consensus 283 ~~~~~~L~-~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~ 323 (328)
++++=|+. -|.+.+++-| ++.|+| +.+...++|+++|=+
T Consensus 104 EIh~DA~~~~g~RVliVDD-LlATGG-T~~A~~eLi~~Lgge 143 (175)
T TIGR01090 104 EIHKDAIKIPGQRVLIVDD-LLATGG-TAEATLELIKKLGGE 143 (175)
T ss_pred EEEHHHHHCCCCEEEEEEC-CCCCHH-HHHHHHHHHHHHCCE
T ss_conf 3411136407890899832-201267-899999999985961
No 282
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=53.09 E-value=16 Score=16.43 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 99999999996498389973036--888744289999988762136883241025699999998741576069751343-
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAW--REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~--~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let- 168 (328)
..++.|+...+.|+.++++.--. ........+.+.++. ++.++.+.+.-|..+.++.+++.++|++.+.++-++
T Consensus 30 dP~~~a~~~~~~g~d~l~i~DLdaa~~~~~~n~~~I~~I~---~~~~~pi~vGGGIrs~~~~~~l~~~Ga~kvvi~s~~~ 106 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIV---KAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV 106 (234)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHH---HHCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCHH
T ss_conf 9999999999869998999967530308911599999999---7679568973771759999999864887189714011
Q ss_pred -CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEE--EEC-CCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCC
Q ss_conf -77773205888898999999999998798557707--866-89899999999999974088886020541120487412
Q gi|254780485|r 169 -SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGG--ILG-LGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKF 244 (328)
Q Consensus 169 -~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~--l~G-~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l 244 (328)
.|++..++......+ ++ -+.+...-+- .-| --.+..+..+++..+.+++. ..+-++ -+...||.
T Consensus 107 ~~~~~~~~~~~~~G~q-~i-------v~slD~k~~~~~~~~~~~~~~~~~~~~i~~~~~~g~--geiilt-~i~~dGt~- 174 (234)
T cd04732 107 KNPELVKELLKEYGGE-RI-------VVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGV--KAIIYT-DISRDGTL- 174 (234)
T ss_pred HCHHHHHHHHHHCCCC-CE-------EEEEEEECCCHHCCCCCEEECCCHHHHHHHHHHCCC--CEEEEE-EECCCCCC-
T ss_conf 0827899999982976-46-------999997512000168640013516999999974586--469987-64256653-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE
Q ss_conf 445687989999999999996868721423115651656899999809988997786
Q gi|254780485|r 245 EENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT 301 (328)
Q Consensus 245 ~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~ 301 (328)
.....+.++-+ .+.. +..+-+++|- +-..+..+ ....|+++.++|--
T Consensus 175 ----~G~d~~ll~~i--~~~~--~~p~i~~GGv-~s~~di~~-l~~~g~~gvivgsA 221 (234)
T cd04732 175 ----SGPNFELYKEL--AAAT--GIPVIASGGV-SSLDDIKA-LKELGVAGVIVGKA 221 (234)
T ss_pred ----CCCCHHHHHHH--HHHC--CCCEEEEECC-CCHHHHHH-HHHCCCCEEEEEHH
T ss_conf ----56899999999--8657--9989998189-99999999-99779989999889
No 283
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=51.61 E-value=17 Score=16.28 Aligned_cols=45 Identities=20% Similarity=0.394 Sum_probs=24.5
Q ss_pred HHHHHHHHHCCCEEE--ECCEEECCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 689999980998899--7786651588898999999998298532479
Q gi|254780485|r 283 ELQALCFFSGANSIF--VGDTLLTAKNPSYNKDTILFNRLGLIPDLSA 328 (328)
Q Consensus 283 ~~~~~~L~~GaN~~~--~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~~ 328 (328)
.+++.+-.+|.+.|+ +|+|+ ..+-...++..+..+++||-=+|++
T Consensus 71 Glr~~c~eaGl~~illYVGGNl-vVGk~df~dV~~rFkeMGfDRVfap 117 (134)
T TIGR01501 71 GLRDKCAEAGLDAILLYVGGNL-VVGKTDFEDVEKRFKEMGFDRVFAP 117 (134)
T ss_pred HHHHHHHHCCCCCEEEEECCEE-EECCCCHHHHHHHHHHCCCCEEECC
T ss_conf 5789998658882799876766-5577673678888764587332369
No 284
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=51.46 E-value=17 Score=16.26 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCE-EEECCC--------CC-HHHHHHHHCCCCC
Q ss_conf 7999999999964983899730368887442899999887621368832-410256--------99-9999987415760
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLET-CMTLGM--------LS-FEQAQILSKAGLD 160 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i-~~~~g~--------~~-~~~~~~Lk~aG~~ 160 (328)
..+...+......|..-+-++..+......-.+.+....+.++...... .+..+. .+ .+.....+++|.+
T Consensus 67 ~~is~aa~~~a~~GvDyVKVGl~~~~~~~~~~e~~~~~~~av~~~~~~~~vVav~~AD~~~~~~~~p~~i~~~a~~~G~~ 146 (235)
T pfam04476 67 GTVSLAALGAAVSGADYIKVGLYGVKNYDEAVEVMKNVVRAVKDFDSSKIVVAAGYADAYRIGAVEPLDVPEIAADAGAD 146 (235)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 16789998755038998999437888679999999999999872278866999960103331388835679999975997
Q ss_pred EEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 6975134377773205888898999999999998798557707866898999999999999740888
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~ 227 (328)
.+. +||...-........+.++--...+.+|+.|+.++ |-|. . +.+|+..|+.++..
T Consensus 147 gvM--iDT~~K~g~sl~d~~~~~~L~~fv~~a~~~gl~~g---LAGS---L--~~~di~~l~~l~pd 203 (235)
T pfam04476 147 IAM--LDTAIKDGTTLFDHMKIEDLESFVKLARDNGLKVA---LAGS---I--SWEHIEPLKEIGTD 203 (235)
T ss_pred EEE--EECCCCCCCCHHHHCCHHHHHHHHHHHHHCCCEEE---EECC---C--CHHHHHHHHHCCCC
T ss_conf 899--87466789766664999999999999997598399---8457---8--88888999864999
No 285
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=51.03 E-value=17 Score=16.22 Aligned_cols=78 Identities=14% Similarity=0.055 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCCCEEEECCCCCHH----HHHHHHCCC
Q ss_conf 068579999999999-649838997303688874428999998876213---688324102569999----999874157
Q gi|254780485|r 87 LINVDQVLKEAKNAK-ENGATRYCMGAAWREPKERDLSIIVDMIKGVKS---LGLETCMTLGMLSFE----QAQILSKAG 158 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~---~~~~i~~~~g~~~~~----~~~~Lk~aG 158 (328)
..+.+.+.+.++... ..|+.-+++.++..+-.....+...++++...+ ....+.+.+|..+-. ..+...++|
T Consensus 17 ~iD~~~~~~~i~~li~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~s~~~ai~~a~~a~~~G 96 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELG 96 (288)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 97999999999999987799899979354252138999999999999997289860873588645999999999998649
Q ss_pred CCEEEE
Q ss_conf 606975
Q gi|254780485|r 159 LDYYNH 164 (328)
Q Consensus 159 ~~~~~~ 164 (328)
+|.+.+
T Consensus 97 ad~v~v 102 (288)
T cd00954 97 YDAISA 102 (288)
T ss_pred CCEEEE
T ss_conf 786773
No 286
>PRK08392 hypothetical protein; Provisional
Probab=50.41 E-value=18 Score=16.16 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=31.3
Q ss_pred CCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 721423115651656899999809988997786651588898999999998298532
Q gi|254780485|r 269 SRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPD 325 (328)
Q Consensus 269 ~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~ 325 (328)
+.+-|.+.......++..++...|+.-++--+--....=...+.-.++++++|+.+.
T Consensus 151 ~~lEIns~~~~~~~~~~~~a~~~Gv~i~i~SDAH~~~~vg~~~~~~~~~~~~~~~~e 207 (215)
T PRK08392 151 KAFEISSRYKVPDLEFIRECIKRGIKLTFASDAHRPEDVGNVSWSEKVFEKAGGKKE 207 (215)
T ss_pred CEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf 877415988899899999999849969997899984545779999999998599899
No 287
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=50.38 E-value=18 Score=16.15 Aligned_cols=88 Identities=11% Similarity=0.031 Sum_probs=44.8
Q ss_pred CCCEEEECCCCC-HHHHHHHHCCC-CCEEEEECCC-----CHHHHHCCC--------CCCCHHHHHHHHHHHHHCCCCC-
Q ss_conf 883241025699-99999874157-6069751343-----777732058--------8889899999999999879855-
Q gi|254780485|r 136 GLETCMTLGMLS-FEQAQILSKAG-LDYYNHNIDT-----SERFYPHVT--------TTHTFEDRLQTLENVRKSGIKV- 199 (328)
Q Consensus 136 ~~~i~~~~g~~~-~~~~~~Lk~aG-~~~~~~~let-----~~~~~~~~~--------~~~~~~~~l~~~~~a~~~G~~~- 199 (328)
...+.++.|=-+ -.-.++|.++| +.-+.-..++ .|+.|.+.+ ++....--=++.+-|.+.|+|+
T Consensus 649 ~~GVIVq~GGQtp~nlA~~L~~~GG~~iLGTS~~~ID~AEDR~kFs~~l~~Lgi~QP~~~~a~s~eea~~~A~~iGYPvl 728 (1089)
T TIGR01369 649 PEGVIVQFGGQTPLNLAKELEEAGGVPILGTSPESIDRAEDREKFSELLDELGIPQPEWKIATSVEEAKEFASEIGYPVL 728 (1089)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEE
T ss_conf 66799974873267899999970893173688578751318679999997158798988527287999999854699289
Q ss_pred --CCEEEECC----CCCHHHHHHHHHHHHH
Q ss_conf --77078668----9899999999999974
Q gi|254780485|r 200 --CCGGILGL----GEMIDDRIDMLLTLAN 223 (328)
Q Consensus 200 --~sg~l~G~----gEt~eeri~~l~~lr~ 223 (328)
=|-.|=|- ....||.-.-|...-+
T Consensus 729 vRPSYVLgG~aM~iv~~~eeL~~yl~~a~~ 758 (1089)
T TIGR01369 729 VRPSYVLGGRAMEIVYNEEELARYLEEAVE 758 (1089)
T ss_pred ECCCCCCCCCCHHEECCHHHHHHHHHHHHH
T ss_conf 816830033621002678899999999997
No 288
>pfam02449 Glyco_hydro_42 Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.
Probab=50.18 E-value=18 Score=16.13 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHC---CCCCCEEEEH---HHHHC-----HHHHH---HHHHHCCCEEEE-------------CCEEE
Q ss_conf 9899999999999968---6872142311---56516-----56899---999809988997-------------78665
Q gi|254780485|r 251 DPIEHVRIISVARILM---PKSRLRLAAG---RAMMS-----DELQA---LCFFSGANSIFV-------------GDTLL 303 (328)
Q Consensus 251 ~~~e~lr~iAi~RL~l---P~~~i~i~~~---~~~~~-----~~~~~---~~L~~GaN~~~~-------------g~~~~ 303 (328)
++....-...+.|=+- |-..+=.|+| |-..+ ..++. .++-.|||+++. ..-++
T Consensus 273 ~~~~~a~~~dl~R~~~~g~pf~vmE~q~g~vnw~~~n~~~~pG~~~l~s~~~vA~GAd~v~yf~Wr~~~~G~E~~h~gll 352 (376)
T pfam02449 273 LPDALAFAHDLYRSLKKGKPFWVMEQSPSPVNWAPYNPAKRPGMMRLWSLQAVAHGADAVCYFQWRQSRGGSEKFHSGVL 352 (376)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCEEEC
T ss_conf 88789988999874248997799747898888877889999779999999999663665764206787873031151204
Q ss_pred CCCC----CCHHHHHHHHHHC
Q ss_conf 1588----8989999999982
Q gi|254780485|r 304 TAKN----PSYNKDTILFNRL 320 (328)
Q Consensus 304 t~~g----~~~~~~~~~i~~~ 320 (328)
.-+| +...|..++.+++
T Consensus 353 ~hdg~~~~r~~~Ev~~~g~el 373 (376)
T pfam02449 353 DHDGREDTRVFREVAEVGEEL 373 (376)
T ss_pred CCCCCCCCCHHHHHHHHHHHH
T ss_conf 879999862599999999999
No 289
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=50.17 E-value=14 Score=16.76 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEE---CCCCCHHHHHHHHHHHHHCC
Q ss_conf 88889899999999999879855770786---68989999999999997408
Q gi|254780485|r 177 TTTHTFEDRLQTLENVRKSGIKVCCGGIL---GLGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 177 ~~~~~~~~~l~~~~~a~~~G~~~~sg~l~---G~gEt~eeri~~l~~lr~l~ 225 (328)
.|+.+. ++++...+-|++- +++ |+|...++.++++.+..+-+
T Consensus 293 yPG~~p----~il~~~~d~GykG---iViEGTGLGHvs~~~ip~i~ra~d~G 337 (413)
T TIGR02153 293 YPGLDP----EILEFLVDKGYKG---IVIEGTGLGHVSEDWIPSIKRATDDG 337 (413)
T ss_pred CCCCCH----HHHHHHHCCCCEE---EEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 389888----8999985187159---99833787555235899999987589
No 290
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=49.16 E-value=19 Score=16.03 Aligned_cols=31 Identities=13% Similarity=0.358 Sum_probs=16.1
Q ss_pred HHCCCEEEECCEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 809988997786651588898999999998298
Q gi|254780485|r 290 FSGANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322 (328)
Q Consensus 290 ~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~ 322 (328)
-.|-+.+++.|.+ .+|.+-.++++|+|++|=
T Consensus 346 v~GKrVvlVDDSI--VRGTTsr~IV~mlReAGA 376 (470)
T COG0034 346 VKGKRVVLVDDSI--VRGTTSRRIVQMLREAGA 376 (470)
T ss_pred HCCCEEEEECCCC--CCCCCHHHHHHHHHHHCC
T ss_conf 5897699972651--457669999999997188
No 291
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=49.15 E-value=19 Score=16.03 Aligned_cols=74 Identities=16% Similarity=0.204 Sum_probs=42.4
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCHHHHHH-HHHHHHHCCCCCCEEECCCEEECC----------------------C--
Q ss_conf 999999987985577078668989999999-999997408888602054112048----------------------7--
Q gi|254780485|r 187 QTLENVRKSGIKVCCGGILGLGEMIDDRID-MLLTLANLSTPPESIPINLLIPIP----------------------G-- 241 (328)
Q Consensus 187 ~~~~~a~~~G~~~~sg~l~G~gEt~eeri~-~l~~lr~l~~~~~~v~~~~~~p~~----------------------g-- 241 (328)
+..+.|.+.|.++ |+=|.|.-+-+-++ ++..-+++- ++.|+..+-|.+ |
T Consensus 248 eL~krA~~~gVQv---mVEGPGHvpl~~I~~nv~l~k~~c---~~aPfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad 321 (432)
T COG0422 248 ELTKRAWEAGVQV---MVEGPGHVPLNEIEANVKLQKELC---DGAPFYVLGPLVTDIAPGYDHITSAIGAAMAAWAGAD 321 (432)
T ss_pred HHHHHHHHCCCEE---EEECCCCCCHHHHHHHHHHHHHHC---CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999999859879---997898673999999899999851---7997155577433557770378888889998764786
Q ss_pred -----CCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf -----4124456879899999999999968
Q gi|254780485|r 242 -----SKFEENKKVDPIEHVRIISVARILM 266 (328)
Q Consensus 242 -----t~l~~~~~~~~~e~lr~iAi~RL~l 266 (328)
||-++..-|+.++.-.=+-.+||.-
T Consensus 322 ~LCYVTPaEHL~LP~~eDV~eGvIa~kIAA 351 (432)
T COG0422 322 MLCYVTPAEHLGLPNVEDVKEGVIAYKIAA 351 (432)
T ss_pred EEEECCCHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 588438389739998899988899999999
No 292
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=48.90 E-value=19 Score=16.00 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=82.6
Q ss_pred HHCCCCEEEEEEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC-------
Q ss_conf 862898569998645307868342---3212433547775641000685799999999996498389973036-------
Q gi|254780485|r 45 KNFEPNHIQLSKLLNIKTGGCPEN---CGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW------- 114 (328)
Q Consensus 45 ~~~~g~~V~~~~~in~~TN~C~~~---C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~------- 114 (328)
+++.+..+++.--++. ..++..+ -.++.+....+-...--.-.++|.+.+.|+.+.+.|+..+-|-.|=
T Consensus 18 ~~~g~~~l~~TEmv~a-~~l~~~~~~~~~~~~~~~~e~P~~~Ql~G~dp~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~ 96 (309)
T pfam01207 18 REYGAGDLVVTEMVTA-KAQLRPEKQRELMLPELEEPTPLAVQLGGSDPALLAEAAKLVADLGADIIDINMGCPAKKVTR 96 (309)
T ss_pred HHHCCCCEEEECCEEE-HHHHCCCHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCC
T ss_conf 9979592999798997-135438875887420076789728999369999999999998863999896518999999878
Q ss_pred ---CCCCCCCHHHHHHHHHHHCC-CCCCEEE--ECCCC-C----HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHH
Q ss_conf ---88874428999998876213-6883241--02569-9----999998741576069751343777732058888989
Q gi|254780485|r 115 ---REPKERDLSIIVDMIKGVKS-LGLETCM--TLGML-S----FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFE 183 (328)
Q Consensus 115 ---~~~~~~~~~~~~e~i~~i~~-~~~~i~~--~~g~~-~----~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~ 183 (328)
+.-...+.+.+.++++.+++ .+..+.+ -+|.- + .+-.+.+.++|++.+.+---|..+.|. +..+|+
T Consensus 97 ~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK~RlG~d~~~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~---g~a~w~ 173 (309)
T pfam01207 97 GGAGAALLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTRAQNYE---GPADWD 173 (309)
T ss_pred CCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHCCC---CCCCHH
T ss_conf 99776254177899999999997558854675433788763889999999984688879996763240267---865418
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 9999999999879855770786689899999999999
Q gi|254780485|r 184 DRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLT 220 (328)
Q Consensus 184 ~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~ 220 (328)
.--+ + .....+++. .=|=.-+.+|..+++..
T Consensus 174 ~i~~-~--k~~~~ipvi---~NGdi~~~~d~~~~l~~ 204 (309)
T pfam01207 174 AIKQ-V--KQAVSIPVI---ANGDITDAEDAQRCLSY 204 (309)
T ss_pred HHHH-H--HHHCCCCEE---EECCCCCHHHHHHHHHH
T ss_conf 9999-9--985898289---80894889999999861
No 293
>pfam10758 DUF2586 Protein of unknown function (DUF2586). This bacterial family of proteins has no known function.
Probab=48.86 E-value=12 Score=17.29 Aligned_cols=99 Identities=29% Similarity=0.424 Sum_probs=53.3
Q ss_pred CCCCCCCEEEECCCCCHHHHHH---HHHHHHHCCCCCCEEECCCEEE-CCCCCCCCCCCCC-----------------HH
Q ss_conf 7985577078668989999999---9999974088886020541120-4874124456879-----------------89
Q gi|254780485|r 195 SGIKVCCGGILGLGEMIDDRID---MLLTLANLSTPPESIPINLLIP-IPGSKFEENKKVD-----------------PI 253 (328)
Q Consensus 195 ~G~~~~sg~l~G~gEt~eeri~---~l~~lr~l~~~~~~v~~~~~~p-~~gt~l~~~~~~~-----------------~~ 253 (328)
.-+++-+|-++|+|+.+.|-.. .+.+|+.|+....+|| -|.| .+|..-.+-..+. ..
T Consensus 194 SPmRV~TGal~glg~~P~D~~g~~l~lAtl~aL~~~R~SVP--~wYpDYdG~YW~DG~tLDv~GGDyQ~IEnlRvvdKaa 271 (363)
T pfam10758 194 SPMRVATGALLGLGELPVDKDGKPLTLATLAALDAARYSVP--QWYPDYDGVYWGDGNTLDAEGGDYQVIENLRVVDKAA 271 (363)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC--CCCCCCCCCEECCCCEEECCCCCHHEEEHHHHHHHHH
T ss_conf 85310135530377788488988753899999986374665--2348999755047816505887502011227788898
Q ss_pred HHHHHHHHHHHHCCCC---CCEEEEHHHHHCHHHHHHHHHHCCCE
Q ss_conf 9999999999968687---21423115651656899999809988
Q gi|254780485|r 254 EHVRIISVARILMPKS---RLRLAAGRAMMSDELQALCFFSGANS 295 (328)
Q Consensus 254 e~lr~iAi~RL~lP~~---~i~i~~~~~~~~~~~~~~~L~~GaN~ 295 (328)
...|++||.||.--.. .-.|.+..--.++.++.++-..-.|+
T Consensus 272 RrVRi~AI~rIadR~lNSTP~Siaa~~~yF~rpLReMskS~~i~G 316 (363)
T pfam10758 272 RRVRILAIARIADRSLNSTPSSIAAHKTYFMRPLREMSKSTTING 316 (363)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHEEECC
T ss_conf 899999999874165678858899999885526887653304777
No 294
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=48.72 E-value=19 Score=15.98 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHCCC-H-HH----HHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 478999999997399-1-89----999999998886289856999864530-7868342321243354777564100068
Q gi|254780485|r 17 KVWTSKEVFQIYNMP-F-ND----LLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLIN 89 (328)
Q Consensus 17 e~ls~eea~~L~~~~-~-~e----l~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~ 89 (328)
..+|..+.+.+.+.. + .+ .+..|.+..+ .+..+. .+..-+|+. +... ++.|.
T Consensus 47 g~i~p~~Fi~~ae~~gli~~l~~~v~~~a~~~~~-~~~~~~-~~~l~iNis~~~l~--~~~~~----------------- 105 (256)
T COG2200 47 GLISPGEFIPLAEETGLIVELGRWVLEEACRQLR-TWPRAG-PLRLAVNLSPVQLR--SPGLV----------------- 105 (256)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HCCCCC-CEEEEEECCHHHHC--CCHHH-----------------
T ss_conf 8679899999998849899999999999999998-532138-80799984888828--65699-----------------
Q ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 57999999999964983899730368887442899999887621368832410256999999987415760697513437
Q gi|254780485|r 90 VDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS 169 (328)
Q Consensus 90 ~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~ 169 (328)
+.+.+..+. ...-..++.+-..... .....+.....++.+++.+..+.+.-+=.....+..|++..+|.+.+ .
T Consensus 106 -~~l~~~l~~-~~~~~~~l~~EitE~~-~~~~~~~~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~l~~d~iKI----D 178 (256)
T COG2200 106 -DLLLRLLAR-LGLPPHRLVLEITESA-LIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKI----D 178 (256)
T ss_pred -HHHHHHHHH-CCCCCCEEEEEECCCH-HHCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEE----C
T ss_conf -999999997-3999120799974871-22498999999999997799899978999716599998579974999----6
Q ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 777320588889899999-9999998798557707866898999999999999740888
Q gi|254780485|r 170 ERFYPHVTTTHTFEDRLQ-TLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~-~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~ 227 (328)
+.+...+........-++ .+..||++|+.+.+ --+||.+ .+..|++++..
T Consensus 179 ~~fv~~i~~~~~~~~iv~~iv~la~~l~~~vva----EGVEt~~----ql~~L~~~G~~ 229 (256)
T COG2200 179 RSFVRDLETDARDQAIVRAIVALAHKLGLTVVA----EGVETEE----QLDLLRELGCD 229 (256)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEE----EECCCHH----HHHHHHHCCCC
T ss_conf 999986303831179999999999974998999----7069699----99999977999
No 295
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=48.37 E-value=19 Score=15.95 Aligned_cols=53 Identities=17% Similarity=0.089 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-HHHHHCHHHHHHHHHHCCCEEEECC
Q ss_conf 456879899999999999968687214231-1565165689999980998899778
Q gi|254780485|r 246 ENKKVDPIEHVRIISVARILMPKSRLRLAA-GRAMMSDELQALCFFSGANSIFVGD 300 (328)
Q Consensus 246 ~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~-~~~~~~~~~~~~~L~~GaN~~~~g~ 300 (328)
.....|..|.+..+.+++=.-= ...+|. +=||...-...++.-.||--|-+|.
T Consensus 336 ~NQiGTvset~ea~~la~~~g~--~~ivShRSGETeD~~IaDLAVg~ga~~iK~G~ 389 (408)
T cd03313 336 VNQIGTLTETIEAIKLAKKNGY--GVVVSHRSGETEDTFIADLAVALGAGQIKTGA 389 (408)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--EEEEECCCCCCCCCHHHHHHHHCCCCCEECCC
T ss_conf 5457729999999999998698--79997899886501799989870898002589
No 296
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=48.15 E-value=19 Score=15.93 Aligned_cols=201 Identities=17% Similarity=0.161 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------------CCHHHHHHHHHHHCCCCCC---EEEE---C-
Q ss_conf 68579999999999649838997303688874-----------------4289999988762136883---2410---2-
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKE-----------------RDLSIIVDMIKGVKSLGLE---TCMT---L- 143 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~-----------------~~~~~~~e~i~~i~~~~~~---i~~~---~- 143 (328)
-+.|..++.++.+.+.|+.-+-++ -...++. ...+..+++++.+++.+.. +.+. +
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELG-vPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi 106 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELG-VPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI 106 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHH
T ss_conf 998999999999986798889966-8888867668899998999997799889999999999861899988998701188
Q ss_pred CCCC-HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 5699-999998741576069751343777732058888989999999999987985577078668989999999999997
Q gi|254780485|r 144 GMLS-FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLA 222 (328)
Q Consensus 144 g~~~-~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr 222 (328)
.-.. +.-+++.+++|++.+.+ +.-..++.-+..+.+.+.|+.. +.+--.-|..+|++-+....
T Consensus 107 ~~~Gie~F~~~~~~~GvdGliv-------------pDLP~ee~~~~~~~~~~~gi~~---I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 107 FNYGIEKFLRRAKEAGVDGLLV-------------PDLPPEESDELLKAAEKHGIDP---IFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred HHHHHHHHHHHHHHCCCCEEEE-------------CCCCHHHHHHHHHHHHHCCCCE---EEEECCCCCHHHHHHHHHHC
T ss_conf 7735999999999759987985-------------7898667778999999769867---98869999989999999747
Q ss_pred HCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf 40888860205411204874124456879899999999999968687214231156516568999998099889977866
Q gi|254780485|r 223 NLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 223 ~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
+ .++- +....|+.-...+ .+ ...-+.+.-.|=+- .+++..|..--.++.......+ ||++++|.-+
T Consensus 171 ~-----GFiY---~vs~~GvTG~~~~-~~-~~~~~~v~~vr~~~---~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 171 S-----GFIY---YVSRMGVTGARNP-VS-ADVKELVKRVRKYT---DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred C-----CCEE---EEECCCCCCCCCC-CC-HHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHH-CCEEEECHHH
T ss_conf 9-----8589---9966666677765-30-46999999999744---8973874486999999999976-8857973999
Q ss_pred EC--CCC---CCHHHHHHHHHH
Q ss_conf 51--588---898999999998
Q gi|254780485|r 303 LT--AKN---PSYNKDTILFNR 319 (328)
Q Consensus 303 ~t--~~g---~~~~~~~~~i~~ 319 (328)
+. ..+ ...++..+++++
T Consensus 237 V~~i~~~~~~~~~~~~~~l~~~ 258 (265)
T COG0159 237 VKIIEEGLDEEALEELRALVKE 258 (265)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999955514469999999999
No 297
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=47.81 E-value=19 Score=15.89 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999988762136883241025-69999999874157606975134
Q gi|254780485|r 123 SIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNID 167 (328)
Q Consensus 123 ~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~le 167 (328)
+.+.+.++.+|+..+...+-+| ..+.+.++.|.++|+|.+.+.+.
T Consensus 136 ~~~~~~i~~ik~~~~~~~iiaGNvaT~e~~~~L~~~GaD~vkVGIG 181 (347)
T PRK05096 136 EHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIG 181 (347)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 8899999999987899808814312399999999737889997677
No 298
>PRK13132 consensus
Probab=47.71 E-value=20 Score=15.88 Aligned_cols=202 Identities=12% Similarity=0.142 Sum_probs=111.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC---------------CHHHHHHHHHHHCCCCCCEEEE---C-CCCC
Q ss_conf 6857999999999964983899730368887-44---------------2899999887621368832410---2-5699
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPK-ER---------------DLSIIVDMIKGVKSLGLETCMT---L-GMLS 147 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~---------------~~~~~~e~i~~i~~~~~~i~~~---~-g~~~ 147 (328)
-+.|.-++.++.+.+.|+.-+-++--.-+|. +. .++.+.++++.++...+.+.++ . ....
T Consensus 22 P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~ir~~~pivlM~Y~N~i~~~G 101 (246)
T PRK13132 22 PNLETTKEFLQRLDESPLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARVKTKKALVFLVYYNLIFAYG 101 (246)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHCC
T ss_conf 99899999999999749998997898888765589999999999877998999999999753699979996010887729
Q ss_pred -HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf -9999987415760697513437777320588889899999999999879855770786689899999999999974088
Q gi|254780485|r 148 -FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 148 -~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~ 226 (328)
+.-+++++++|++.+.+ |.-.+++--+..+.+.+.|+..- .++-. |-.+|+..+.. . .
T Consensus 102 ~e~F~~~~~~~GvdGlIi-------------pDLP~ee~~~~~~~~~~~~i~~I--~lvaP--Ts~~R~~~i~~--~-s- 160 (246)
T PRK13132 102 LEKFVKKAKELGISGLIV-------------PDLPFEESEELIKECEKYNIALI--PLISV--TSPKRAKKILK--H-A- 160 (246)
T ss_pred HHHHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHCCCCEE--EEECC--CCHHHHHHHHH--C-C-
T ss_conf 999999998769985775-------------79997898999999998599701--44257--97899999995--4-8-
Q ss_pred CCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEEC-C
Q ss_conf 886020541120487412445687989999999999996868721423115651656899999809988997786651-5
Q gi|254780485|r 227 PPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLT-A 305 (328)
Q Consensus 227 ~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t-~ 305 (328)
..++- .+...|+.-.. .....+....+.-.|-+- .+++..|-.--.++..+ .+..+||++++|..++. -
T Consensus 161 -~gfiY---~vs~~GvTG~~--~~~~~~~~~~i~~ik~~t---~~Pv~vGFGI~~~e~v~-~~~~~aDGvIVGSa~v~~i 230 (246)
T PRK13132 161 -KGFIY---ALGSIGVTGTK--SVEEARLKDKVKEIKSFT---DLPVAVGFGIKNNQDVK-RMRKYADGVIVGTSIVKLF 230 (246)
T ss_pred -CCCEE---EEECCCCCCCC--CCCHHHHHHHHHHHHHCC---CCCEEEECCCCCHHHHH-HHHHCCCEEEECHHHHHHH
T ss_conf -98279---97535677776--663688999999999628---99869977989999999-9982299999709999999
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 888989999999982
Q gi|254780485|r 306 KNPSYNKDTILFNRL 320 (328)
Q Consensus 306 ~g~~~~~~~~~i~~~ 320 (328)
...+.++..+.|+++
T Consensus 231 ~~~~~~~~~k~i~el 245 (246)
T PRK13132 231 KKFSLDEIMKDIEEI 245 (246)
T ss_pred HHCCHHHHHHHHHHH
T ss_conf 872968899999964
No 299
>TIGR02390 RNA_pol_rpoA1 DNA-directed RNA polymerase subunit A'; InterPro: IPR012758 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of the archaeal A' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0008270 zinc ion binding, 0006350 transcription.
Probab=47.59 E-value=10 Score=17.81 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=33.8
Q ss_pred CCCCCCCHHHHHHHHC-CCH----HHH--HHHHHHHHHHHCCCCEEE---EEEEEEE--CCCCCCCCCCCCCCCC
Q ss_conf 2344789999999973-991----899--999999988862898569---9986453--0786834232124335
Q gi|254780485|r 14 KKPKVWTSKEVFQIYN-MPF----NDL--LFWSHTVHRKNFEPNHIQ---LSKLLNI--KTGGCPENCGYCNQSV 76 (328)
Q Consensus 14 ~~~e~ls~eea~~L~~-~~~----~el--~~~Aa~~~r~~~~g~~V~---~~~~in~--~TN~C~~~C~fCaf~~ 76 (328)
.+...+|++|+..|+. +.. .+. .-..-..-|..+.|+.++ +=-.+|+ .|++|.-.|.-|.+..
T Consensus 533 ~k~~~~t~~ev~~iL~~~~~~~~~~~~~~ie~~~~eGrdywTGK~ifS~~LP~dLn~~~~a~~~~G~c~~C~~e~ 607 (901)
T TIGR02390 533 VKSTLFTKEEVVTILKKAGLKGEPEEPKAIEKPKEEGRDYWTGKQIFSAFLPEDLNFEFRAKVCSGKCEACKKEE 607 (901)
T ss_pred HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 047776889999999860767787666633177866753221035554207887772140136788500100367
No 300
>TIGR01430 aden_deam adenosine deaminase; InterPro: IPR006330 This family includes the experimentally verified adenosine deaminases of mammals and Escherichia coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. ; GO: 0004000 adenosine deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process.
Probab=47.23 E-value=20 Score=15.83 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHH--HCCCCCCCEEEEC-CCC-CHHHHHHHHHHHHHCCC--CCCEEECCCEEECCCCCCCCCCCCCHHHH
Q ss_conf 899999999999--8798557707866-898-99999999999974088--88602054112048741244568798999
Q gi|254780485|r 182 FEDRLQTLENVR--KSGIKVCCGGILG-LGE-MIDDRIDMLLTLANLST--PPESIPINLLIPIPGSKFEENKKVDPIEH 255 (328)
Q Consensus 182 ~~~~l~~~~~a~--~~G~~~~sg~l~G-~gE-t~eeri~~l~~lr~l~~--~~~~v~~~~~~p~~gt~l~~~~~~~~~e~ 255 (328)
..+.+++.+.|+ ++|+++|++ -| |.+ +++..-+- |.+|+. ..||| ......++
T Consensus 186 ~~~F~~~f~~Arsl~~Gl~~T~H--AGlhE~~g~~~v~~A---ld~l~~~RIgHG~----------------~~~eDp~L 244 (346)
T TIGR01430 186 PEKFVRAFAIARSLELGLKLTVH--AGLHELGGPESVREA---LDDLGATRIGHGV----------------RALEDPEL 244 (346)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEE--CCCCCCCCHHHHHHH---HHHCCCCCCCCCC----------------CCCCCHHH
T ss_conf 77899999998765169835630--375345774679999---9853885100240----------------00148789
Q ss_pred HHH-HHHHHHHC---CCCCCEEEEHHHHHCHHHHHHHHHHCCC
Q ss_conf 999-99999968---6872142311565165689999980998
Q gi|254780485|r 256 VRI-ISVARILM---PKSRLRLAAGRAMMSDELQALCFFSGAN 294 (328)
Q Consensus 256 lr~-iAi~RL~l---P~~~i~i~~~~~~~~~~~~~~~L~~GaN 294 (328)
++- ++--++++ |-.++.+++ |.+...-==+.-+..|.+
T Consensus 245 ~~rlL~~~~i~le~CP~SN~~l~~-v~~~~~~Pl~~f~~~G~~ 286 (346)
T TIGR01430 245 LKRLLAEEQITLEVCPLSNLALGV-VKSLAEHPLKRFLEAGVK 286 (346)
T ss_pred HHHHHHHCCCEEEECCHHHHHCCC-CCCCCCHHHHHHHHCCCC
T ss_conf 999998679558875211111013-588652378998865685
No 301
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=46.88 E-value=20 Score=15.80 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=7.9
Q ss_pred CHHHHHHHHCCCCCEE
Q ss_conf 9999998741576069
Q gi|254780485|r 147 SFEQAQILSKAGLDYY 162 (328)
Q Consensus 147 ~~~~~~~Lk~aG~~~~ 162 (328)
+.+++....++|+|.+
T Consensus 89 tl~e~~~a~~~~~d~I 104 (169)
T pfam01729 89 NLEELEEALEAGADII 104 (169)
T ss_pred HHHHHHHHHHCCCCEE
T ss_conf 1998999984699899
No 302
>PRK00077 eno phosphopyruvate hydratase; Provisional
Probab=46.83 E-value=20 Score=15.79 Aligned_cols=73 Identities=16% Similarity=0.135 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEE-HHHHHCHHHHHHHHHHCCCEEEECCEEECCCCC---CHHHHHHHHHHCC
Q ss_conf 456879899999999999968687214231-156516568999998099889977866515888---9899999999829
Q gi|254780485|r 246 ENKKVDPIEHVRIISVARILMPKSRLRLAA-GRAMMSDELQALCFFSGANSIFVGDTLLTAKNP---SYNKDTILFNRLG 321 (328)
Q Consensus 246 ~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~-~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~---~~~~~~~~i~~~G 321 (328)
.....|..|.+..+.+++=.-= ...+|. +-||...-...++.-.||.-+-+|. ..+|- ..++.++.=+++|
T Consensus 338 ~NQiGTvset~eai~la~~~g~--~~ivShRSGETeD~~IaDLAVg~ga~~iK~Ga---~~R~ER~aKyNrLlrIeeeLg 412 (427)
T PRK00077 338 VNQIGTLTETLEAIELAKRAGY--TAVISHRSGETEDTTIADLAVATNAGQIKTGS---LSRSERVAKYNQLLRIEEELG 412 (427)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC--EEEEECCCCCCCCCHHHHHHHHCCCCHHHCCC---CCCHHHHHHHHHHHHHHHHHH
T ss_conf 4346739999999999998698--79997898986621599989860897320589---840788999999999999862
Q ss_pred CC
Q ss_conf 85
Q gi|254780485|r 322 LI 323 (328)
Q Consensus 322 ~~ 323 (328)
-.
T Consensus 413 ~~ 414 (427)
T PRK00077 413 EK 414 (427)
T ss_pred HC
T ss_conf 14
No 303
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.76 E-value=20 Score=15.79 Aligned_cols=189 Identities=15% Similarity=0.176 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHH-CCCCCCEEEECCCCCHHH----HHHHHCCCCCEEEEECCCCHH---HHHCCCCCCCHHHHHHHHHHH
Q ss_conf 289999988762-136883241025699999----998741576069751343777---732058888989999999999
Q gi|254780485|r 121 DLSIIVDMIKGV-KSLGLETCMTLGMLSFEQ----AQILSKAGLDYYNHNIDTSER---FYPHVTTTHTFEDRLQTLENV 192 (328)
Q Consensus 121 ~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~----~~~Lk~aG~~~~~~~let~~~---~~~~~~~~~~~~~~l~~~~~a 192 (328)
..+++++.++.. +..+..+.+|++-.+.++ ++++.++|+|.+.+|+-+ |. ..... ..+.+..-++++..
T Consensus 73 G~~~~~~~l~~~~~~~~~pvi~si~~~~~~d~~~~~~~~~~~gad~ielNiSc-PNt~~~g~~~--~~~~~~~~~i~~~v 149 (296)
T cd04740 73 GVEAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISC-PNVKGGGMAF--GTDPEAVAEIVKAV 149 (296)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHHH--CCCHHHHHHHHHHH
T ss_conf 64899987898635689718998168987899999999886489889997889-9867636775--74999999999999
Q ss_pred HHC-CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-CCCEEEC-----CCCCCCC--CCCCCH----HHHHHHH
Q ss_conf 987-9855770786689899999999999974088886020-5411204-----8741244--568798----9999999
Q gi|254780485|r 193 RKS-GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-INLLIPI-----PGSKFEE--NKKVDP----IEHVRII 259 (328)
Q Consensus 193 ~~~-G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~~~~~p~-----~gt~l~~--~~~~~~----~e~lr~i 259 (328)
++. ..+ +++=+.-...+..+....+.+-+. +++. +|.+... ...|... ....|. .-.|+++
T Consensus 150 k~~~~~P----i~vKlsP~~~~i~~ia~~~~~~g~--dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~al~~v 223 (296)
T cd04740 150 KKATDVP----VIVKLTPNVTDIVEIARAAEEAGA--DGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMV 223 (296)
T ss_pred HHCCCCC----EEEECCCCCCHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8604896----699718980009999999997699--8899974678766364446755245578768677889999999
Q ss_pred HHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC-----HHHHHHHHHHCCCC
Q ss_conf 99999686872142311565165689999980998899778665158889-----89999999982985
Q gi|254780485|r 260 SVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS-----YNKDTILFNRLGLI 323 (328)
Q Consensus 260 Ai~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~-----~~~~~~~i~~~G~~ 323 (328)
+..|-.+ +..| |.+|=.. ..+-....+.+||+.+.+.--+ - .|+. .++..+.+++-||.
T Consensus 224 ~~~~~~~-~ipI-ig~GGI~-s~~da~e~i~aGAs~VQi~Tai-~-~Gp~~i~~i~~~L~~~l~~~G~~ 287 (296)
T cd04740 224 YQVYKAV-EIPI-IGVGGIA-SGEDALEFLMAGASAVQVGTAN-F-VDPEAFKEIIEGLEAYLDEEGIK 287 (296)
T ss_pred HHHHHHC-CCCE-EEECCCC-CHHHHHHHHHCCCCHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998545-8887-9757979-9999999998399888723667-4-29279999999999999983999
No 304
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.55 E-value=20 Score=15.76 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=80.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCHHHHHHHHHHH----CCCCCCEEEECC-------CCC-HH
Q ss_conf 00068579999999999649838997303688---8744289999988762----136883241025-------699-99
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWRE---PKERDLSIIVDMIKGV----KSLGLETCMTLG-------MLS-FE 149 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~---~~~~~~~~~~e~i~~i----~~~~~~i~~~~g-------~~~-~~ 149 (328)
....+.+.+.+.++.+.+.|+..+.+.+++.. ++.....++.+.++.+ .+.++.+.+..- ..+ ++
T Consensus 84 ~R~~~i~~~k~~id~A~~Lga~~v~v~~~~~~~~~~~~~~w~~~~e~l~~l~~~A~~~Gv~l~lE~l~~~e~~li~~~~~ 163 (276)
T PRK09856 84 MRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNAND 163 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHCCHHH
T ss_conf 98999999999999999849984999368777888979999999999999999999739989995176111420068999
Q ss_pred HHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHH-HHHCCCC-----CCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999874157606975134377773205888898999999999-9987985-----5770786689899999999999974
Q gi|254780485|r 150 QAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLEN-VRKSGIK-----VCCGGILGLGEMIDDRIDMLLTLAN 223 (328)
Q Consensus 150 ~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~-a~~~G~~-----~~sg~l~G~gEt~eeri~~l~~lr~ 223 (328)
....+...|-+.+.+.+|+..- .+...+..+.++.+.. ..-.-+. ...+.+.|.|+ -+.-+.+..|++
T Consensus 164 ~~~~~~~v~~~~~~~~lD~~h~----~~~~~~~~~~~~~~g~~l~HvHi~D~~g~~d~hl~pG~G~--~d~~~il~~L~~ 237 (276)
T PRK09856 164 VLHALALVPSPRLFSMVDICAP----YVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGK--MPLRELMRDIID 237 (276)
T ss_pred HHHHHHHCCCCCEEEEEECHHH----HHCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC--CCHHHHHHHHHH
T ss_conf 9999985799864899854137----5538999999998588746998767999866773799987--788999999998
Q ss_pred CCCCCCEEECCCEEECCCCCCCCCCCCCHHH-HHHHHHHHHHHCCC
Q ss_conf 0888860205411204874124456879899-99999999996868
Q gi|254780485|r 224 LSTPPESIPINLLIPIPGSKFEENKKVDPIE-HVRIISVARILMPK 268 (328)
Q Consensus 224 l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e-~lr~iAi~RL~lP~ 268 (328)
.+.. ..+.+=.+.... ..|.. ..+.++..|=++|.
T Consensus 238 ~gY~-G~vsvEl~~~y~---------~~P~~~a~~sl~~lR~~~~e 273 (276)
T PRK09856 238 RGYE-GYCTVELVTMYM---------NEPRLYARQALERFRALLPE 273 (276)
T ss_pred CCCC-CEEEEEECCCCC---------CCHHHHHHHHHHHHHHHCCC
T ss_conf 5998-159999725765---------79999999999999975452
No 305
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=46.54 E-value=19 Score=16.04 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=44.3
Q ss_pred CEEEECCCCCHHHHHHHHCCCCCEEEEE----CCC-CHHH-HHCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 3241025699999998741576069751----343-7777-3205888898999999999998798557
Q gi|254780485|r 138 ETCMTLGMLSFEQAQILSKAGLDYYNHN----IDT-SERF-YPHVTTTHTFEDRLQTLENVRKSGIKVC 200 (328)
Q Consensus 138 ~i~~~~g~~~~~~~~~Lk~aG~~~~~~~----let-~~~~-~~~~~~~~~~~~~l~~~~~a~~~G~~~~ 200 (328)
...+++|..+....+.|.-.|...+.+. ||. .|.. ...|-.......++++++.|.++|+++.
T Consensus 58 p~~v~iGyrsPk~vRglhPSG~~~VlV~Nv~dLe~ldp~~~aarIAs~VG~rKR~eI~~rA~elGikVl 126 (133)
T COG1717 58 PPMVKIGYRSPKAVRGLHPSGYEEVLVHNVKDLEKLDPETQAARIASTVGARKRIEILERARELGIKVL 126 (133)
T ss_pred CCCCCCCCCCCHHHCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 998645778827652568776602355168887423804679999976417789999999998291774
No 306
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=45.79 E-value=21 Score=15.69 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---------CHHHHHHHHHHHCCCCCCEEE
Q ss_conf 000685799999999996498389973036888744---------289999988762136883241
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER---------DLSIIVDMIKGVKSLGLETCM 141 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~---------~~~~~~e~i~~i~~~~~~i~~ 141 (328)
-+..+.+.++++++.+.+.|++-+.+-........+ +-..+.+++|.+|+..+.+.+
T Consensus 45 v~R~sid~l~~~i~~~~~lGI~av~LF~v~~~~~kkd~~gs~a~~~~~lv~rAIr~iK~~fpdl~v 110 (320)
T cd04824 45 INRYGVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLI 110 (320)
T ss_pred CCEECHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 634489999999999998799979971667610068734450148654999999999987898499
No 307
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=45.76 E-value=21 Score=15.69 Aligned_cols=140 Identities=12% Similarity=0.145 Sum_probs=72.8
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCH----HHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999887621368832410256999----99998741576069751343777732058888989999999999987985
Q gi|254780485|r 123 SIIVDMIKGVKSLGLETCMTLGMLSF----EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198 (328)
Q Consensus 123 ~~~~e~i~~i~~~~~~i~~~~g~~~~----~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~ 198 (328)
+.+.++.+.+. ....+++.+..-+. ++.+++.+.+-+ .+-+++-+ .+.+++++.+.+.|++
T Consensus 41 ~~~~~i~~~~~-~~~~l~~qv~~~~~e~M~~~a~~l~~~~~n-----------vvVKIP~t---~~Gl~ai~~L~~~Gi~ 105 (220)
T PRK12653 41 VVLPQLHEAMG-GQGRLFAQVMATTAEGMVNDARKLRSIIAD-----------IVVKVPVT---AEGLAAIKMLKAEGIP 105 (220)
T ss_pred HHHHHHHHHHC-CCCCEEEEEEECCHHHHHHHHHHHHHHCCC-----------EEEEECCC---HHHHHHHHHHHHCCCC
T ss_conf 99999999808-998589998758899999999999873578-----------08994885---7899999999882987
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHH
Q ss_conf 57707866898999999999999740888860205411204874124456879899999999999968687214231156
Q gi|254780485|r 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRA 278 (328)
Q Consensus 199 ~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~ 278 (328)
++.|.+|...+ .......+..+ |+ ||.- ++.+...-.....-.+..+.+..-.++.|-.++-|.
T Consensus 106 vn~Tavys~~Q--------a~~Aa~aGA~y--vs--Pyvg----R~~d~g~Dg~~~i~~i~~~~~~~~~~tkILaASiR~ 169 (220)
T PRK12653 106 TLGTAVYGAAQ--------GLLSALAGAEY--VA--PYVN----RIDAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKT 169 (220)
T ss_pred EEEEECCCHHH--------HHHHHHCCCCE--EE--EEEE----EHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 78521067999--------99999859988--84--4425----064338982668999999999769998899983899
Q ss_pred HHCHHHHHHHHHHCCCEE
Q ss_conf 516568999998099889
Q gi|254780485|r 279 MMSDELQALCFFSGANSI 296 (328)
Q Consensus 279 ~~~~~~~~~~L~~GaN~~ 296 (328)
. ..-..+..+||+.+
T Consensus 170 ~---~~v~~a~~~Gad~i 184 (220)
T PRK12653 170 P---RQALDCLLAGCESI 184 (220)
T ss_pred H---HHHHHHHHCCCCEE
T ss_conf 9---99999998699999
No 308
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=45.63 E-value=21 Score=15.67 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHH-HHHHHHHCCCC
Q ss_conf 42899999887621368832410256999999987415760697513437777320588889899999-99999987985
Q gi|254780485|r 120 RDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQ-TLENVRKSGIK 198 (328)
Q Consensus 120 ~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~-~~~~a~~~G~~ 198 (328)
...+...+.++.++..+..+++.-.-.....+..|+...++.+.+ ++.+...+.........++ ..+.||++|++
T Consensus 130 ~~~~~~~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKl----d~~li~~~~~~~~~~~~~~~l~~~a~~~g~~ 205 (241)
T smart00052 130 DDDESAVATLQRLRELGVRIALDDFGTGYSSLSYLKRLPVDLLKI----DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ 205 (241)
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCHHHCC----CHHHHHHCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 089999999999997099787537899810189998657204224----7999961326845589999999999985998
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 57707866898999999999999740888
Q gi|254780485|r 199 VCCGGILGLGEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 199 ~~sg~l~G~gEt~eeri~~l~~lr~l~~~ 227 (328)
+-+.. +||.++ +..+++++..
T Consensus 206 viaeg----VE~~~~----~~~l~~~Gi~ 226 (241)
T smart00052 206 VVAEG----VETPEQ----LDLLRSLGCD 226 (241)
T ss_pred EEEEE----CCCHHH----HHHHHHCCCC
T ss_conf 99971----881999----9999974999
No 309
>TIGR00411 redox_disulf_1 redox-active disulfide protein 1; InterPro: IPR004502 This group of proteins includes thioredoxins, glutaredoxins, protein-disulphide isomerases, and others, some of which have several such domains. The sequence of proteins in this group at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although overall the sequence seems closer to thioredoxins. Proteins may be involved in a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis.
Probab=45.59 E-value=21 Score=15.67 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCC---EEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 689999980998---8997786651588898999999998
Q gi|254780485|r 283 ELQALCFFSGAN---SIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 283 ~~~~~~L~~GaN---~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
+..+.||.+|.- .+.+.+.+.--|-++-++..++|++
T Consensus 41 e~~~kA~~yGi~aVPaivINg~v~f~GaP~~eeL~eaI~k 80 (82)
T TIGR00411 41 EDLKKALEYGIMAVPAIVINGKVRFVGAPDKEELVEAIRK 80 (82)
T ss_pred CCHHHHHHCCCCCCCEEEECCEEEEEEECCHHHHHHHHHH
T ss_conf 4847887516352684787790688530886899999763
No 310
>pfam00343 Phosphorylase Carbohydrate phosphorylase. The members of this family catalyse the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin.
Probab=45.53 E-value=14 Score=16.94 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCCCEEEE---HHHHHCHHHHHHHHHHCCC-EEEECCEEE----------CCCCCCHHHHHHHHHHCCCCC
Q ss_conf 99999968687214231---1565165689999980998-899778665----------158889899999999829853
Q gi|254780485|r 259 ISVARILMPKSRLRLAA---GRAMMSDELQALCFFSGAN-SIFVGDTLL----------TAKNPSYNKDTILFNRLGLIP 324 (328)
Q Consensus 259 iAi~RL~lP~~~i~i~~---~~~~~~~~~~~~~L~~GaN-~~~~g~~~~----------t~~g~~~~~~~~~i~~~G~~P 324 (328)
|.++|.+.|-+.+..+. +.|.-|......+|..+.| ||+-|-++. -.=|.+.++..+ ++.-|+.|
T Consensus 533 VslAe~lipa~Dvseqis~a~~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~-~~~~gY~~ 611 (712)
T pfam00343 533 VSLAEKIIPASDISEQISTAGTEASGTSNMKFALNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEA-LRKKGYRS 611 (712)
T ss_pred HHHHHHHCCCCCHHHHCCCCCCCCCCCCCHHHHHCCCEEEECCCCHHHHHHHHCCCCCEEEECCCHHHHHH-HHHCCCCH
T ss_conf 69998753420046437888734578620689976872673366526788986285536870687789999-98659885
Q ss_pred C
Q ss_conf 2
Q gi|254780485|r 325 D 325 (328)
Q Consensus 325 ~ 325 (328)
.
T Consensus 612 ~ 612 (712)
T pfam00343 612 R 612 (712)
T ss_pred H
T ss_conf 6
No 311
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=45.49 E-value=21 Score=15.66 Aligned_cols=171 Identities=18% Similarity=0.288 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHH----HCCCCCCEEEECCCCC-HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 74428999998876----2136883241025699-999998741576069751343777732058888989999999999
Q gi|254780485|r 118 KERDLSIIVDMIKG----VKSLGLETCMTLGMLS-FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENV 192 (328)
Q Consensus 118 ~~~~~~~~~e~i~~----i~~~~~~i~~~~g~~~-~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a 192 (328)
+.-++....+.++. +-..+++..- .|.-| +-....|++.|++.+.++.--.|.+|.+. -+.--...+.|
T Consensus 44 p~~~L~~~~~~~~~g~i~~gAQn~~~~~-~GA~TGeiS~~mL~d~G~~~viiGHSERR~~~~E~-----d~~i~~K~~aa 117 (251)
T COG0149 44 PFTDLRRVAELVEIGNIKVGAQNVDPED-SGAFTGEISAEMLKDLGAKYVLIGHSERRLYFGET-----DELIAKKVKAA 117 (251)
T ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCCC-CCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCC-----HHHHHHHHHHH
T ss_conf 8778999999852478317746688655-77866838899999869988997850112435634-----69999999999
Q ss_pred HHCCCCCCCEEEECCCCCHHHHHH--HHHHHH--------HCCCCCCEEECCCEEEC--CCCCCCCCCCCCHHHHHHHHH
Q ss_conf 987985577078668989999999--999997--------40888860205411204--874124456879899999999
Q gi|254780485|r 193 RKSGIKVCCGGILGLGEMIDDRID--MLLTLA--------NLSTPPESIPINLLIPI--PGSKFEENKKVDPIEHVRIIS 260 (328)
Q Consensus 193 ~~~G~~~~sg~l~G~gEt~eeri~--~l~~lr--------~l~~~~~~v~~~~~~p~--~gt~l~~~~~~~~~e~lr~iA 260 (328)
++.|+.+ ++=.|||.++|-. ++..+. .+......+ -..=|. -|| -.++|+.+.-.+.+
T Consensus 118 ~~~Gl~p----IlCvGEtl~~reag~t~~v~~~Ql~~~l~~l~~~~~~v--IAYEPvWAIGT----G~~at~~~a~~v~~ 187 (251)
T COG0149 118 KEAGLTP----ILCVGETLEEREAGKTLEVLKRQLAAALAALSPEANIV--IAYEPVWAIGT----GKSASPADAEEVHA 187 (251)
T ss_pred HHCCCEE----EEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEE--EEECCHHHHCC----CCCCCHHHHHHHHH
T ss_conf 9889968----99858977777555668899999999987448543739--99878888458----98889888999999
Q ss_pred HHHHHCCC-----CCCEEEE-HHHHHCHHHHHHHHHHCCCEEEECCEEECC
Q ss_conf 99996868-----7214231-156516568999998099889977866515
Q gi|254780485|r 261 VARILMPK-----SRLRLAA-GRAMMSDELQALCFFSGANSIFVGDTLLTA 305 (328)
Q Consensus 261 i~RL~lP~-----~~i~i~~-~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~ 305 (328)
..|-.+-. ..++|+- |=++ ......++..-++||.++|+-.+.+
T Consensus 188 ~Ir~~~~~~~~~~~~v~IlYGGSV~-~~N~~e~~~~~~idG~LVGgAslka 237 (251)
T COG0149 188 FIRAVLAELFGAEEKVRILYGGSVK-PGNAAELAAQPDIDGALVGGASLKA 237 (251)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCC-HHHHHHHHCCCCCCEEEECCEEECC
T ss_conf 9999999744877875799717768-5579999658999868972133052
No 312
>PRK10551 hypothetical protein; Provisional
Probab=45.45 E-value=21 Score=15.65 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=4.8
Q ss_pred HHHHHHCCCC
Q ss_conf 9999982985
Q gi|254780485|r 314 TILFNRLGLI 323 (328)
Q Consensus 314 ~~~i~~~G~~ 323 (328)
.+-++++|+.
T Consensus 403 l~~Lr~~Gv~ 412 (518)
T PRK10551 403 FAWLHSQGIE 412 (518)
T ss_pred HHHHHHCCCE
T ss_conf 9999976994
No 313
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=45.18 E-value=21 Score=15.63 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=24.5
Q ss_pred EEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 4231156516568999998099889977866515888989999999
Q gi|254780485|r 272 RLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILF 317 (328)
Q Consensus 272 ~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i 317 (328)
.+.+.-+.+-..++++ ..+|+|.++.+-. -|...++-++++
T Consensus 279 ~l~Gtpe~v~~~l~~~-~d~Gvd~i~~~~~----~g~~~~~~le~~ 319 (324)
T PRK02271 279 SIAGTPDDVVEKIEDL-LEAGVTQIVAGSP----IGPDKEKSIKLI 319 (324)
T ss_pred EEECCHHHHHHHHHHH-HHCCCCEEEEECC----CCCCHHHHHHHH
T ss_conf 7878999999999999-9669988998589----997989999999
No 314
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=44.73 E-value=22 Score=15.58 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=20.9
Q ss_pred EEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC-CCHHHHHHHHHH
Q ss_conf 423115651656899999809988997786651588-898999999998
Q gi|254780485|r 272 RLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN-PSYNKDTILFNR 319 (328)
Q Consensus 272 ~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g-~~~~~~~~~i~~ 319 (328)
.+++| ++++.-..++..+..++=+...+.+.+| .+.+.+.++++.
T Consensus 410 iLAGG---L~peNV~eAi~~~p~gVDVSSGVE~~pGvKD~~KI~~Fi~~ 455 (459)
T PRK09427 410 LLAGG---LNADNCAQAAQLGCAGLDFNSGVESAPGIKDAQKLAAVFQT 455 (459)
T ss_pred EEECC---CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99766---99899999995699999916531899997699999999999
No 315
>pfam09587 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=43.95 E-value=22 Score=15.50 Aligned_cols=135 Identities=18% Similarity=0.124 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 69999999874157606975134377773205888898999999999998798557707866898999999999999740
Q gi|254780485|r 145 MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 145 ~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
-...+.+..|+++|++.+.+. . ...-....+--.+|++.+.+.|+.. +|.|.+.++.-.- .+.+.
T Consensus 62 ~~~~~~~~~L~~~G~d~vslA----N----NH~~D~G~~G~~~T~~~L~~~gi~~-----~G~g~~~~~a~~p--~~~~~ 126 (237)
T pfam09587 62 RAPPENAEALKAAGFDVVSLA----N----NHSLDYGEEGLLDTLDALDRAGIAH-----AGAGRNLEEARRP--AILEV 126 (237)
T ss_pred ECCHHHHHHHHHCCCCEEEEC----C----CCCCCCCHHHHHHHHHHHHHCCCCC-----CCCCCCHHHCCCC--EEEEE
T ss_conf 799999999998499999957----7----6433257799999999999879960-----5888994662780--89997
Q ss_pred CCCCCEEECCCEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHHCCCCCC-EEEEHHH------HHCHHHHHHHHHHC
Q ss_conf 8888602054112048741-----2445687989999999999996868721-4231156------51656899999809
Q gi|254780485|r 225 STPPESIPINLLIPIPGSK-----FEENKKVDPIEHVRIISVARILMPKSRL-RLAAGRA------MMSDELQALCFFSG 292 (328)
Q Consensus 225 ~~~~~~v~~~~~~p~~gt~-----l~~~~~~~~~e~lr~iAi~RL~lP~~~i-~i~~~~~------~~~~~~~~~~L~~G 292 (328)
... -|.+..+....+.. -......+.....+.|+-+|=- .+..| .+-.|.| ....++....+.+|
T Consensus 127 ~g~--kia~l~~t~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~k~~-~D~vIv~~HwG~E~~~~p~~~q~~~a~~lidaG 203 (237)
T pfam09587 127 NGI--RIAFLAYTYGTNGWGAGPYRPGVNPLDEEKIKADIRRAKKK-ADIVIVSLHWGVEYQYEPTPEQRELAHALIDAG 203 (237)
T ss_pred CCC--EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 993--89999987587875678888755756999999999987507-999999877566787699999999999999779
Q ss_pred CCEEE
Q ss_conf 98899
Q gi|254780485|r 293 ANSIF 297 (328)
Q Consensus 293 aN~~~ 297 (328)
||-++
T Consensus 204 aDlIi 208 (237)
T pfam09587 204 ADLVI 208 (237)
T ss_pred CCEEE
T ss_conf 99999
No 316
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=43.71 E-value=22 Score=15.48 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHH----HHHHHCCCCCEEE
Q ss_conf 685799999999996498389973036888744289999988762136883241025699999----9987415760697
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQ----AQILSKAGLDYYN 163 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~----~~~Lk~aG~~~~~ 163 (328)
.+.+.+.+.++...+.|+.-++..++..+-...+.+...++++...+..-.+.+.+|..+-++ .+.-+++|+|.+.
T Consensus 17 iD~~~l~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~vi~~~~~~~~~vi~~vg~~~~~~ai~la~~A~~~Gad~i~ 96 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYAIA 96 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 79999999999999779999997813121655899999999999999679818997778799999999999977999899
Q ss_pred E
Q ss_conf 5
Q gi|254780485|r 164 H 164 (328)
Q Consensus 164 ~ 164 (328)
+
T Consensus 97 ~ 97 (279)
T cd00953 97 S 97 (279)
T ss_pred E
T ss_conf 7
No 317
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=43.56 E-value=23 Score=15.46 Aligned_cols=118 Identities=12% Similarity=0.092 Sum_probs=56.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCC---CHHHHHHHHCCCCC
Q ss_conf 100068579999999999649838997303688874428999998876213688324102569---99999987415760
Q gi|254780485|r 84 ASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGML---SFEQAQILSKAGLD 160 (328)
Q Consensus 84 ~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~---~~~~~~~Lk~aG~~ 160 (328)
.|.....+.+.+.++..++.|+..++++ .......-+.+...+++...+....-.| -++.. ..+.++.|.+.|++
T Consensus 66 ~Ys~~E~~~M~~dI~~~~~~Ga~GvV~G-~L~~dg~iD~~~~~~Li~~a~~l~vTFH-RAfD~~~dp~~ale~Li~lG~~ 143 (248)
T PRK11572 66 CYSDGEFAAMLEDIRTVRELGFPGLVTG-VLDVDGHVDMPRMEKIMAAAGPLAVTFH-RAFDMCANPLNALKNLAELGVA 143 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEE-EECCCCCCCHHHHHHHHHHHCCCEEEEE-CHHHCCCCHHHHHHHHHHCCCC
T ss_conf 6798999999999999998699967996-6889998499999999997489807986-2022149999999999975999
Q ss_pred EEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH
Q ss_conf 69751343777732058888989999999999987985577078668989999999
Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRID 216 (328)
Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~ 216 (328)
+++. + -...+..+=++.++...+.+=.. -+|-|-|=+.+..-.
T Consensus 144 rILT----S-------G~~~~A~~G~~~L~~L~~~a~~~--iIm~GgGV~~~Ni~~ 186 (248)
T PRK11572 144 RILT----S-------GQQSDAEQGLSLIMELIAQGDAP--IIMAGAGVRAENLQK 186 (248)
T ss_pred EEEC----C-------CCCCCHHHHHHHHHHHHHHCCCC--EEEECCCCCHHHHHH
T ss_conf 8988----9-------99787778899999999844996--898789989999999
No 318
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=43.16 E-value=23 Score=15.42 Aligned_cols=78 Identities=17% Similarity=0.040 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCCCEEEECCCCCHH----HHHHHHCCCC
Q ss_conf 06857999999999964983899730368887442899999887621---3688324102569999----9998741576
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK---SLGLETCMTLGMLSFE----QAQILSKAGL 159 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~---~~~~~i~~~~g~~~~~----~~~~Lk~aG~ 159 (328)
..+.+.+.+.++...+.|+.-+.+.++..+......+...++++... .....+.+.+|..+-. ..+..+++|+
T Consensus 18 ~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~~st~~~i~~a~~A~~~Ga 97 (289)
T pfam00701 18 RLDEEALRKLIEFLINKGADGLFVGGTTGESFTLSTEEHEQLIEITVDEAKGRIPVIAGTGSNSTREAIHLAQLAEAAGA 97 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 96999999999999977999999783640311388999999999999981998628637888789999999999997499
Q ss_pred CEEEE
Q ss_conf 06975
Q gi|254780485|r 160 DYYNH 164 (328)
Q Consensus 160 ~~~~~ 164 (328)
|.+.+
T Consensus 98 d~i~v 102 (289)
T pfam00701 98 DGVLA 102 (289)
T ss_pred CEEEE
T ss_conf 97887
No 319
>PRK06740 histidinol-phosphatase; Validated
Probab=42.80 E-value=23 Score=15.39 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------------------------CCHHHHHHHHHHHC----CC
Q ss_conf 8579999999999649838997303688874-----------------------------42899999887621----36
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKE-----------------------------RDLSIIVDMIKGVK----SL 135 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~-----------------------------~~~~~~~e~i~~i~----~~ 135 (328)
+.|=+-.-.+++++.|+++++++-..+.-.. ..++.+...|...| +.
T Consensus 59 ~~~W~~~y~e~a~~~Gi~evgi~eH~yrF~E~k~~y~~~~~l~ds~~G~~Q~~Wl~~v~~~~~~df~~~i~~~k~~~~~~ 138 (338)
T PRK06740 59 TTKWIDLYLEEAVRKGIKEVGIVDHLYRFYEAKEYYERYVDISDSRLGRLQKEWLDQVRVASLHDFTKAIEEAKERWSKR 138 (338)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999997586246311644211777888998851670667699999985441010999999999999876642
Q ss_pred CCCEE--EEC--CCCCHHHHHHHHC-CCCCEEE---EECCC----CHHH---HHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 88324--102--5699999998741-5760697---51343----7777---320588889899999999999879855
Q gi|254780485|r 136 GLETC--MTL--GMLSFEQAQILSK-AGLDYYN---HNIDT----SERF---YPHVTTTHTFEDRLQTLENVRKSGIKV 199 (328)
Q Consensus 136 ~~~i~--~~~--g~~~~~~~~~Lk~-aG~~~~~---~~let----~~~~---~~~~~~~~~~~~~l~~~~~a~~~G~~~ 199 (328)
++.+- +.+ .+-.++.++++-. ...|.++ |.++. .|+. |.+.....-|.+..+.++.+-+.|+--
T Consensus 139 gi~lKLGIEaDY~pG~E~~l~~lL~~YpfDYvIGSVHFl~gWgFDnPe~~~~~~~~Dl~~iy~~YF~~ve~~A~SGLFD 217 (338)
T PRK06740 139 GVTLKLGIEADYFIGGEQELQSLLALGDFDYVIGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAVRSELFD 217 (338)
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8735888774047885999999974499755998888607878889789988850899999999999999999759972
No 320
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=42.35 E-value=24 Score=15.34 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CC----CEEEECCCCCHHH----HHHHHCCC
Q ss_conf 685799999999996498389973036888744289999988762136-88----3241025699999----99874157
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL-GL----ETCMTLGMLSFEQ----AQILSKAG 158 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~-~~----~i~~~~g~~~~~~----~~~Lk~aG 158 (328)
.++|++.+.++...+.|++.+-+-.+.......+++.-++.++.+++. +. .+-++-+ .+.++ .+.|.+.+
T Consensus 138 ~~~~~~~~~~~~~~~~Gf~~~K~k~g~~~~~~~~~~~di~~v~~ir~~~g~~~~l~vDaN~~-~~~~~A~~~~~~l~~~~ 216 (357)
T cd03316 138 DSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGR-WDLAEAIRLARALEEYD 216 (357)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHHHHHHHHH
T ss_conf 99999999999999769978985368886441269999999999999829995698657655-57999999999886544
Q ss_pred CCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEE
Q ss_conf 60697513437777320588889899999999999-87985577078668989999999999997408888602054112
Q gi|254780485|r 159 LDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVR-KSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLI 237 (328)
Q Consensus 159 ~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~-~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~ 237 (328)
+..+ .+=++..++ +-++..+ +..++ +..+|+.-..-+....++. +. +- .+.
T Consensus 217 l~~i-----------EqP~~~~d~----~~~~~l~~~~~~p------I~~~Es~~~~~~~~~~i~~-~a----~d--i~~ 268 (357)
T cd03316 217 LFWF-----------EEPVPPDDL----EGLARLRQATSVP------IAAGENLYTRWEFRDLLEA-GA----VD--IIQ 268 (357)
T ss_pred HHHH-----------CCCCCCCCH----HHHHHHHHCCCCC------EEECCCCCCHHHHHHHHHC-CC----CC--EEE
T ss_conf 6650-----------589895579----9999998628996------8817887887888888870-77----76--376
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 04874124456879899999999999968
Q gi|254780485|r 238 PIPGSKFEENKKVDPIEHVRIISVARILM 266 (328)
Q Consensus 238 p~~gt~l~~~~~~~~~e~lr~iAi~RL~l 266 (328)
|.. .......+.+|+.++++-.-
T Consensus 269 ~d~------~~~GGit~~~~i~~~A~~~g 291 (357)
T cd03316 269 PDV------TKVGGITEAKKIAALAEAHG 291 (357)
T ss_pred ECC------CCCCCHHHHHHHHHHHHHCC
T ss_conf 267------44698799999999999869
No 321
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=42.01 E-value=24 Score=15.31 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=14.1
Q ss_pred HHHHHHHHHCCCCC-CCEEEECCCCCHHH
Q ss_conf 99999999879855-77078668989999
Q gi|254780485|r 186 LQTLENVRKSGIKV-CCGGILGLGEMIDD 213 (328)
Q Consensus 186 l~~~~~a~~~G~~~-~sg~l~G~gEt~ee 213 (328)
+++++..++.|..+ ....++--.|.-.|
T Consensus 121 ~e~i~~l~~~G~~V~~v~~ivDR~eg~~e 149 (170)
T PRK13811 121 LYGIEQLRSAGAVVDDVVTVVDREEGAEE 149 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCHHH
T ss_conf 99999999889979999999977747799
No 322
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.69 E-value=24 Score=15.28 Aligned_cols=153 Identities=17% Similarity=0.069 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHH----HHHHCCCCCEE
Q ss_conf 685799999999996498389973036888744289999988762-1368832410256999999----98741576069
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQA----QILSKAGLDYY 162 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~----~~Lk~aG~~~~ 162 (328)
.++|+..+.++...+.|++.+-+-.|. +...+++.+ +.+|.. .+..+.+-+|-+ .+.++. +.|.+.++..
T Consensus 133 ~~~e~~~~~~~~~~~~G~~~~KiKvg~--~~~~d~~~v-~~vr~~~~~~~l~vDaN~~-~~~~~A~~~~~~l~~~~i~~- 207 (316)
T cd03319 133 DTPEAMAAAAKKAAKRGFPLLKIKLGG--DLEDDIERI-RAIREAAPDARLRVDANQG-WTPEEAVELLRELAELGVEL- 207 (316)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHH-HHHHHHCCCCEEEEECCCC-CCHHHHHHHHHHHHHHHHHH-
T ss_conf 999999999999997598768632489--979999999-9999668996299846888-89999999999752443444-
Q ss_pred EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC
Q ss_conf 75134377773205888898999999999998798557707866898999999999999740888860205411204874
Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGS 242 (328)
Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt 242 (328)
+.+=.+..+++.. -+-..+.++++. .+|+.-..-+ +..+.+.+. .+ .+.|.+
T Consensus 208 ----------iEqP~~~~d~~~~---~~l~~~~~~pIa------~dEs~~~~~d-~~~~~~~~a-~d-----~v~~k~-- 259 (316)
T cd03319 208 ----------IEQPVPAGDDDGL---AYLRDKSPLPIM------ADESCFSAAD-AARLAGGGA-YD-----GINIKL-- 259 (316)
T ss_pred ----------HCCCCCCCCHHHH---HHHHHHCCCCEE------ECCCCCCHHH-HHHHHHCCC-CC-----EEEECC--
T ss_conf ----------3089899999999---999996899999------3588799999-999997699-88-----698451--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHH
Q ss_conf 1244568798999999999999686872142311565
Q gi|254780485|r 243 KFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAM 279 (328)
Q Consensus 243 ~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~ 279 (328)
.......+.+|+.++++-.- ..+.+.+.+++
T Consensus 260 ----~~~GGit~~~~ia~~A~~~g--i~~~~g~~~es 290 (316)
T cd03319 260 ----MKTGGLTEALRIADLARAAG--LKVMVGCMVES 290 (316)
T ss_pred ----HHHCCHHHHHHHHHHHHHCC--CEEEECCCCCC
T ss_conf ----44089899999999999869--94998188546
No 323
>pfam00563 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Probab=41.60 E-value=24 Score=15.27 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHH-HHHHHHHCCCCCCCE
Q ss_conf 9999887621368832410256999999987415760697513437777320588889899999-999999879855770
Q gi|254780485|r 124 IIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQ-TLENVRKSGIKVCCG 202 (328)
Q Consensus 124 ~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~-~~~~a~~~G~~~~sg 202 (328)
...+.++.++..+..+++.-.-.....+..+....+|.+.+ ++.+...+. .......++ ....|+++|+++.+.
T Consensus 132 ~~~~~i~~lk~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKi----d~~~~~~~~-~~~~~~~~~~l~~~a~~~~~~viae 206 (233)
T pfam00563 132 RLLEALARLRSLGFRLALDDFGTGYSSLSYLSRLPPDYIKI----DRSFIKDLS-DPESRALLRALIALARELGIKVVAE 206 (233)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCCEEEE----CHHHHHHCC-CCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999997799589617899976778997488878999----899984077-7218999999999999879989997
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 786689899999999999974088
Q gi|254780485|r 203 GILGLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 203 ~l~G~gEt~eeri~~l~~lr~l~~ 226 (328)
. +|+.++ +..+++++.
T Consensus 207 G----VE~~~~----~~~l~~~Gv 222 (233)
T pfam00563 207 G----VETEEQ----LELLKELGI 222 (233)
T ss_pred E----CCCHHH----HHHHHHCCC
T ss_conf 0----863999----999997599
No 324
>COG2350 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.58 E-value=24 Score=15.33 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 9999999999997408888602054112048741
Q gi|254780485|r 210 MIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 210 t~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
..+.|-.|+.+|+.++.....+..+||.+..|++
T Consensus 17 r~~~r~~H~~~L~~~~a~G~ll~sGP~~~~dg~~ 50 (92)
T COG2350 17 RLAVRPAHLARLKQLYAEGRLLTSGPFPDRDGGP 50 (92)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC
T ss_conf 8621488999999753368499847997877897
No 325
>PRK13135 consensus
Probab=41.51 E-value=24 Score=15.26 Aligned_cols=182 Identities=16% Similarity=0.107 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-----------------CHHHHHHHHHHHCCC-C-CCEEEECCCCC--
Q ss_conf 85799999999996498389973036888744-----------------289999988762136-8-83241025699--
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKER-----------------DLSIIVDMIKGVKSL-G-LETCMTLGMLS-- 147 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~-----------------~~~~~~e~i~~i~~~-~-~~i~~~~g~~~-- 147 (328)
+.|.-++.++.+.+.|+.-+-++ -...++.- .++.++++++.++.. . +.+.+ +..+
T Consensus 29 ~~~~s~~~l~~l~~~GaDiiElG-iPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~PivlM--~Y~N~i 105 (267)
T PRK13135 29 DLATTEALIPLLAESGADIIELG-VPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRRCQVPIVLM--GYYNPI 105 (267)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEE--ECCHHH
T ss_conf 98999999999997599999978-998986665899999999999769849999999998633589988998--423099
Q ss_pred -----HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf -----999998741576069751343777732058888989999999999987985577078668989999999999997
Q gi|254780485|r 148 -----FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLA 222 (328)
Q Consensus 148 -----~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr 222 (328)
+.-++..+++|++.+.+ |.-.+++.-+....+.+.|+..- .++- --|.++|+..+....
T Consensus 106 ~~yG~e~F~~~~~~~GvdGlIi-------------pDLP~ee~~~~~~~~~~~~l~~I--~lvs-Ptt~~~Ri~~i~~~s 169 (267)
T PRK13135 106 FAYGLERFAADAAAAGVDGVLL-------------VDLPPEEAEEFKACADRHGLDVI--FLLT-PTSDESRIRTVARLG 169 (267)
T ss_pred HHHHHHHHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHCCCCEE--EEEC-CCCCHHHHHHHHHCC
T ss_conf 8846899999999749974763-------------78997888999999987296189--9808-989579999999618
Q ss_pred HCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf 40888860205411204874124456879899999999999968687214231156516568999998099889977866
Q gi|254780485|r 223 NLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 223 ~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
..++- .+...|+.- .......+....+.-.|-.. .+++..|-.--.++..+ .+..+||++++|..+
T Consensus 170 -----~GFiY---~Vs~~GvTG--~~~~~~~~~~~~i~~ik~~t---~~Pv~vGFGI~~~e~v~-~i~~~ADGvIVGSai 235 (267)
T PRK13135 170 -----RGFVY---YVSVTGVTG--ARSGVEATVGGNVAKIREKI---TVPVVVGFGISTPQQAA-DVAAMADGVVVGSAL 235 (267)
T ss_pred -----CCEEE---EEECCCCCC--CCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHH-HHHCCCCEEEECHHH
T ss_conf -----98189---985456667--76444488999999998606---89848981679999999-998059999987899
Q ss_pred E
Q ss_conf 5
Q gi|254780485|r 303 L 303 (328)
Q Consensus 303 ~ 303 (328)
+
T Consensus 236 V 236 (267)
T PRK13135 236 V 236 (267)
T ss_pred H
T ss_conf 9
No 326
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=41.49 E-value=24 Score=15.26 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC---CCCCHHHHHHHHCCCCCE
Q ss_conf 006857999999999964-9838997303688874428999998876213688324102---569999999874157606
Q gi|254780485|r 86 KLINVDQVLKEAKNAKEN-GATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL---GMLSFEQAQILSKAGLDY 161 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~-G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~---g~~~~~~~~~Lk~aG~~~ 161 (328)
.-+++|.+++.|+.+.+. |++-+-+-+|.- ++ ++-+++++++++.++..-+.+ |..+.++..++-.. +..
T Consensus 177 ealtpe~iv~~A~a~~~~yGF~~~KLKgGV~-~~----~eEi~~v~AL~eafP~~~lrlDPNgaWs~~~Airl~r~-l~~ 250 (441)
T TIGR03247 177 EALTPEAVVRLAEAAYDRYGFRDFKLKGGVL-RG----EEEIEAVTALAKRFPQARITLDPNGAWSLDEAIALCKD-LKG 250 (441)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCC-CH----HHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHH-HHC
T ss_conf 1289999999999988741860044147888-81----88999999999868998662579988688999999997-234
Q ss_pred EEEECCCCHHHHHCCCCCCCHHHHHHHHHH-HHHCCCCCCCEEEE
Q ss_conf 975134377773205888898999999999-99879855770786
Q gi|254780485|r 162 YNHNIDTSERFYPHVTTTHTFEDRLQTLEN-VRKSGIKVCCGGIL 205 (328)
Q Consensus 162 ~~~~let~~~~~~~~~~~~~~~~~l~~~~~-a~~~G~~~~sg~l~ 205 (328)
+.-++| .=|+....--=.++|.. .++.|+++.+.|+.
T Consensus 251 ~l~Y~E-------DP~~~e~g~~gre~MAe~r~~t~iPlATNm~~ 288 (441)
T TIGR03247 251 VLAYAE-------DPCGAEQGYSGREVMAEFRRATGLPTATNMIA 288 (441)
T ss_pred CHHHHC-------CCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 055651-------88754467226899999985389873023165
No 327
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=41.39 E-value=24 Score=15.25 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=5.8
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999987985
Q gi|254780485|r 186 LQTLENVRKSGIK 198 (328)
Q Consensus 186 l~~~~~a~~~G~~ 198 (328)
+++++..++.|..
T Consensus 139 ~eai~~l~~~G~~ 151 (187)
T PRK13810 139 RDAIEVVREAGAI 151 (187)
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999988997
No 328
>PRK13136 consensus
Probab=41.26 E-value=24 Score=15.23 Aligned_cols=203 Identities=14% Similarity=0.170 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC---------------CHHHHHHHHHHHCCC-CCC-EEE---EC-CC
Q ss_conf 6857999999999964983899730368887-44---------------289999988762136-883-241---02-56
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPK-ER---------------DLSIIVDMIKGVKSL-GLE-TCM---TL-GM 145 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~---------------~~~~~~e~i~~i~~~-~~~-i~~---~~-g~ 145 (328)
-+.|.-++.++.+.+.|+.-+-++-=.-+|. +. .++.+.++++.+++. ... +.+ |. .-
T Consensus 23 P~~e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~pivlM~Y~N~i~~ 102 (253)
T PRK13136 23 GGLERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRALAQGTTLHDVLTLITSFRQHSEIPIILFTYFNPLLA 102 (253)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHH
T ss_conf 99899999999999659998997899888666579999999999986997999999999822578988899865179999
Q ss_pred CCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998741576069751343777732058888989999999999987985577078668989999999999997408
Q gi|254780485|r 146 LSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 146 ~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~ 225 (328)
..++-+++.+++|++.+.+ |.-.+++--+..+.+++.|+..- .++- --|.++|+..+.....
T Consensus 103 ~G~~f~~~~~~~GvdGlIi-------------pDLP~eE~~~~~~~~~~~~i~~I--~lia-Ptt~~eRi~~i~~~a~-- 164 (253)
T PRK13136 103 AGDKIYQQMKSAGVDGCLV-------------VDLPVEEAAPHLTACKTAKIAPI--LLIS-PSTTQERLKKINEHGE-- 164 (253)
T ss_pred HHHHHHHHHHHCCCCCEEC-------------CCCCHHHHHHHHHHHHHCCCCCE--EEEC-CCCCHHHHHHHHHCCC--
T ss_conf 7999999999749872006-------------78997776999999997588712--5526-8998899999996089--
Q ss_pred CCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE--
Q ss_conf 888602054112048741244568798999999999999686872142311565165689999980998899778665--
Q gi|254780485|r 226 TPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL-- 303 (328)
Q Consensus 226 ~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~-- 303 (328)
.++ ..+...|+.-.. ..-+.+....+.-.|-.- .+++..|-.--.++..+..... ||++++|..++
T Consensus 165 ---gFi---Y~vs~~GvTG~~--~~~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e~v~~~~~~-ADGvIVGSaiV~~ 232 (253)
T PRK13136 165 ---GML---YYVCRPGTTGVR--ATLPENFPAKMNQIKSMT---SLPIVTGFGIANRKMAAQALQY-ADGFVIGSLFVKA 232 (253)
T ss_pred ---CEE---EEEECCCCCCCC--CCCHHHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHH
T ss_conf ---819---998555236876--446388999999999726---9986997154999999999822-9999985899999
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 15888989999999982
Q gi|254780485|r 304 TAKNPSYNKDTILFNRL 320 (328)
Q Consensus 304 t~~g~~~~~~~~~i~~~ 320 (328)
-..|.+.++..++.+.+
T Consensus 233 i~e~~~~~~~~~~~~~l 249 (253)
T PRK13136 233 IAEGISKNALTRLAQSL 249 (253)
T ss_pred HHHCCCHHHHHHHHHHH
T ss_conf 98649988999999870
No 329
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=40.56 E-value=25 Score=15.16 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=68.4
Q ss_pred CCCEEEECCCCCH-HHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH
Q ss_conf 8832410256999-999987415760697513437777320588889899999999999879855770786689899999
Q gi|254780485|r 136 GLETCMTLGMLSF-EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDR 214 (328)
Q Consensus 136 ~~~i~~~~g~~~~-~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eer 214 (328)
.+.+.+.+|..+. +-.+.|.++|+|.+. +||+-. | ...-++++++.++. ++...-++.|=.-|.+-.
T Consensus 231 rL~VgAAIg~~d~~eRa~~Lv~aGvD~lv--iD~AhG--------h-s~~v~~~ik~ik~~-~~~~~~i~aGNVaT~~~~ 298 (497)
T PRK07107 231 RYVVGAGINTRDYEERVPALVEAGADVLC--IDSSDG--------Y-SEWQKRTLDYIKEK-YGDTVKVGAGNVVDRDGF 298 (497)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCEEE--ECCCCC--------C-HHHHHHHHHHHHHH-CCCCCCCCCCCHHCHHHH
T ss_conf 88899963777899999999985999998--034353--------5-29999999999986-698763414521269999
Q ss_pred HHHHHHHHH---CCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCE-EEEHHHHHCHHHHHHH
Q ss_conf 999999974---088886020541120487412445687989999999999996868--7214-2311565165689999
Q gi|254780485|r 215 IDMLLTLAN---LSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPK--SRLR-LAAGRAMMSDELQALC 288 (328)
Q Consensus 215 i~~l~~lr~---l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~--~~i~-i~~~~~~~~~~~~~~~ 288 (328)
.+.+..-.+ .+.-+.++-. -.-..| -+.|+.++. +.+-.+++=+.-. ..++ |+-|=.+...+. -+|
T Consensus 299 ~~L~~aGad~vkVGiGpGSiCt--Tr~v~g---vG~pQ~sAv--~~~a~~~~~~~~~~g~~vpiiADGGi~~sGDi-~KA 370 (497)
T PRK07107 299 LYLAEAGADFVKVGIGGGSICI--TREQKG---IGRGQATAL--IDVAKARDEYFERTGVYIPICSDGGIVHDYHM-TLA 370 (497)
T ss_pred HHHHHCCCCEEEECCCCCCCCE--ECCCCC---CCCCHHHHH--HHHHHHHHHHHHHCCCCCEEECCCCCCCCCHH-HHH
T ss_conf 9999808986897115996621--130125---677348899--99999988877741676328717875655459-999
Q ss_pred HHHCCCEEEECCEE
Q ss_conf 98099889977866
Q gi|254780485|r 289 FFSGANSIFVGDTL 302 (328)
Q Consensus 289 L~~GaN~~~~g~~~ 302 (328)
|-+||+.+|+|..+
T Consensus 371 laaGA~~VMlGsll 384 (497)
T PRK07107 371 LAMGADFIMLGRYF 384 (497)
T ss_pred HHCCCCEEEECCCC
T ss_conf 85389889988110
No 330
>pfam00962 A_deaminase Adenosine/AMP deaminase.
Probab=40.50 E-value=25 Score=15.16 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 88989999999999987985577078668989999999999
Q gi|254780485|r 179 THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLL 219 (328)
Q Consensus 179 ~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~ 219 (328)
+..+.+..+..+.|++.|++++.+. |=....++..+.+.
T Consensus 174 ~~~~~~f~~~f~~a~~~gl~~T~Ha--GE~~~~~~v~~ai~ 212 (329)
T pfam00962 174 GEPLPDFLYAFAEAGKYGLHLTPHA--GEAGGPQSVVDALL 212 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC--CCCCCHHHHHHHHH
T ss_conf 7997999999999998098126734--78898899999998
No 331
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=39.99 E-value=26 Score=15.11 Aligned_cols=229 Identities=19% Similarity=0.144 Sum_probs=104.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCHHHHHHHHHHHCCCCC--CEEEECC
Q ss_conf 2321243354777564100068579999999999649838997303-688874428999998876213688--3241025
Q gi|254780485|r 68 NCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAA-WREPKERDLSIIVDMIKGVKSLGL--ETCMTLG 144 (328)
Q Consensus 68 ~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~-~~~~~~~~~~~~~e~i~~i~~~~~--~i~~~~g 144 (328)
.|.-|+ +++.++..+. .-.+++||.+.|.++.+.|+.-+++--- ...-+..+.+-|.+.+..||+... .+..+.|
T Consensus 8 tcAvtG-a~~T~~~~Pa-lP~TP~qIA~~a~~aa~AGAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~D~vin~ttg 85 (298)
T COG3246 8 TCAVTG-ARHTPADHPA-LPVTPDQIASDAIAAAKAGAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVGDAVINLTTG 85 (298)
T ss_pred EEECCC-CCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 983168-8678566999-99999999999999996484168987458999866699999999999971489869995044
Q ss_pred C------CCHHHHH--HHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHH-HHHHHHHHCCCCCCCEEEECCC-----CC
Q ss_conf 6------9999999--8741576069751343777732058888989999-9999999879855770786689-----89
Q gi|254780485|r 145 M------LSFEQAQ--ILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRL-QTLENVRKSGIKVCCGGILGLG-----EM 210 (328)
Q Consensus 145 ~------~~~~~~~--~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l-~~~~~a~~~G~~~~sg~l~G~g-----Et 210 (328)
. .+++... .++.-+.+..+.+ .++ .+.+.+++.+.-.+.++.++-+ -+
T Consensus 86 ~g~~~~~~~~er~~~~~~~Pe~~~~~~~~------------------~~~~~v~el~~e~~~~~~~~~~~~~~d~vf~nt 147 (298)
T COG3246 86 EGGDLVMPTEERASPWALRPEALSMNLSE------------------FRLPHVLELLPEIGTLDEGGLNFAERDEVFRNL 147 (298)
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCCCC------------------CCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
T ss_conf 45556556565415554587512233311------------------362779987587663213200034664257537
Q ss_pred HHHH--------------------HHHHHHHHHCCCCCCEEECCC-EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999--------------------999999974088886020541-1204874124456879899999999999968687
Q gi|254780485|r 211 IDDR--------------------IDMLLTLANLSTPPESIPINL-LIPIPGSKFEENKKVDPIEHVRIISVARILMPKS 269 (328)
Q Consensus 211 ~eer--------------------i~~l~~lr~l~~~~~~v~~~~-~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~ 269 (328)
..+. ..|+..+..+.. +++.-++ +++.- -+.+..-+.+..-+.+.+....+++
T Consensus 148 ~~~~r~~~~~~~~~gvrpele~~D~ghl~~~~~l~~--~g~~~ppll~q~~----~gi~~g~p~~~~~~~~m~d~~~~~~ 221 (298)
T COG3246 148 PGDLRAVRRRIEELGVRPELECADTGHLYFAGRLAD--EGLLEPPLLHQFV----LGILGGAPADLNTMKAMADRLPSGT 221 (298)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH--CCCCCCCHHHHHH----HCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 678999999988627666744132788999998612--4767873555333----3145677503678998875278787
Q ss_pred CCE-EEEHHHHHCHHHHHHHHHHCCCE-EEECCEEECCCC-------CCHHHHHHHHHHCCCCC
Q ss_conf 214-23115651656899999809988-997786651588-------89899999999829853
Q gi|254780485|r 270 RLR-LAAGRAMMSDELQALCFFSGANS-IFVGDTLLTAKN-------PSYNKDTILFNRLGLIP 324 (328)
Q Consensus 270 ~i~-i~~~~~~~~~~~~~~~L~~GaN~-~~~g~~~~t~~g-------~~~~~~~~~i~~~G~~P 324 (328)
.=+ ++.||-.+ ...-.+...|-|+ +=.++++.-.+| .-++..++.++.+|...
T Consensus 222 ~Ws~~~~GR~qm--~~~a~AallGGnvRVGlEDnl~L~kG~lA~sNa~LV~ra~~i~~~lg~~i 283 (298)
T COG3246 222 TWSVLAIGRQQM--PLAAQAALLGGNVRVGLEDNLWLPKGSLAKSNADLVERARRIVEALGAEI 283 (298)
T ss_pred EEEEEECCHHHC--HHHHHHHHHCCCEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 110000143223--25899997178637741232353789607654999999999998538876
No 332
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=39.47 E-value=26 Score=15.06 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=13.5
Q ss_pred HHHHHHHHHHCCCCC-CCEEEEC
Q ss_conf 999999999879855-7707866
Q gi|254780485|r 185 RLQTLENVRKSGIKV-CCGGILG 206 (328)
Q Consensus 185 ~l~~~~~a~~~G~~~-~sg~l~G 206 (328)
-+++++.+++.|..+ ....++-
T Consensus 127 ~~~ai~~l~~~G~~V~~v~vivD 149 (200)
T PRK00455 127 VLEAVEAIRAAGAEVVGVAVIVD 149 (200)
T ss_pred HHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 99999999987997999999995
No 333
>PRK08562 rpl32e 50S ribosomal protein L32e; Validated
Probab=38.99 E-value=26 Score=15.00 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=38.7
Q ss_pred CCEEEECCCCCHHHHHHHHCCCCCEEEEE----CCC-CHHHH-HCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 83241025699999998741576069751----343-77773-205888898999999999998798557
Q gi|254780485|r 137 LETCMTLGMLSFEQAQILSKAGLDYYNHN----IDT-SERFY-PHVTTTHTFEDRLQTLENVRKSGIKVC 200 (328)
Q Consensus 137 ~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~----let-~~~~~-~~~~~~~~~~~~l~~~~~a~~~G~~~~ 200 (328)
.....++|.-+....+.|.-.|...+.+. ||. .++.+ ..+..+.+...+.++++.|.++|+++.
T Consensus 56 ~~~mp~iGYgs~k~~Rgl~PsG~~~vlV~n~~dLe~L~~~~~a~~Ia~~Vg~kKR~~I~erA~el~ikV~ 125 (127)
T PRK08562 56 KPAPVEVGYRSPKAVRGLHPSGYEEVLVHNVKELEALDPETQAARIASTVGKRKRIEIVKKAKELGIKVL 125 (127)
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCEEEEECCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 7788757778758766869776878886788998854887648998734330359999999998198716
No 334
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=38.92 E-value=27 Score=15.00 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHC-----C-CEEEEEECCCCCCCCCCHH--HHHHHHHHHCC-----CCCCEEEEC-------C----CC
Q ss_conf 7999999999964-----9-8389973036888744289--99998876213-----688324102-------5----69
Q gi|254780485|r 91 DQVLKEAKNAKEN-----G-ATRYCMGAAWREPKERDLS--IIVDMIKGVKS-----LGLETCMTL-------G----ML 146 (328)
Q Consensus 91 Eei~~~a~~~~~~-----G-~~~~~l~~~~~~~~~~~~~--~~~e~i~~i~~-----~~~~i~~~~-------g----~~ 146 (328)
+||.+.++.+.+. | -..+||+--|. ...|+| -++|+||.++. ..+.+|+++ | -.
T Consensus 122 nEIK~~I~~~A~~P~eDtG~~~Dv~IvEiGG--TVGDIEs~PFLEAiRQ~~~e~G~Env~~iHvTLVP~i~aagE~KTKP 199 (571)
T TIGR00337 122 NEIKDRIKRVAKKPVEDTGSGADVVIVEIGG--TVGDIESLPFLEAIRQLKKEVGRENVLFIHVTLVPYIAAAGELKTKP 199 (571)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEEECC--CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf 6789999996037764567997479998377--00000362589999999987389867999840026314487478775
Q ss_pred CHHHHHHHHCCCC--CEEEEE
Q ss_conf 9999998741576--069751
Q gi|254780485|r 147 SFEQAQILSKAGL--DYYNHN 165 (328)
Q Consensus 147 ~~~~~~~Lk~aG~--~~~~~~ 165 (328)
|+...+.|+..|+ |.+.++
T Consensus 200 TQhSVKeLRs~Gi~PD~i~cR 220 (571)
T TIGR00337 200 TQHSVKELRSLGIQPDIIICR 220 (571)
T ss_pred CHHHHHHHHHCCCCCCEEEEC
T ss_conf 127899998609888689981
No 335
>pfam01373 Glyco_hydro_14 Glycosyl hydrolase family 14. This family are beta amylases.
Probab=38.86 E-value=27 Score=14.99 Aligned_cols=12 Identities=25% Similarity=-0.053 Sum_probs=6.3
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999996868
Q gi|254780485|r 257 RIISVARILMPK 268 (328)
Q Consensus 257 r~iAi~RL~lP~ 268 (328)
|+++++|.+++.
T Consensus 251 rvL~~A~~~F~~ 262 (399)
T pfam01373 251 VIGSAAHKNFDP 262 (399)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999986088
No 336
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=38.81 E-value=27 Score=14.99 Aligned_cols=187 Identities=18% Similarity=0.099 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 799999999996498389973036888744289999988762-1368832410256999999987415760697513437
Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS 169 (328)
Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~ 169 (328)
...++.|+...+.|+.+++++--. ....... -.++++.+ ++.++.+.+.-|..+.++.+++.++|++.+.++-++.
T Consensus 35 ~dP~~~a~~~~~~ga~~lhivDLd-a~~g~~~--n~~~I~~i~~~~~~pi~vGGGIrs~~~~~~~l~~Gadkvvigs~~~ 111 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLD-AIMGRGD--NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECC-CCCCCCC--HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCHHC
T ss_conf 799999999998798989999786-5469975--3999999998789988997022769999999860720152451004
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCC--------EEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECC
Q ss_conf 77732058888989999999999987985-577--------078668989999999999997408888602054112048
Q gi|254780485|r 170 ERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCC--------GGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP 240 (328)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~s--------g~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~ 240 (328)
.. .... +.+.+.|-+ +.. ....|-.+..++.++ .+.+. ...+-+.- +-..
T Consensus 112 ~~-----------~~~~---~~~~~~g~~~ivvslD~k~~~~~~~~~~~~~~~~~~---~~~~~---~~eii~t~-Id~d 170 (233)
T cd04723 112 PS-----------DDDE---DRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLR---RLAKW---PEELIVLD-IDRV 170 (233)
T ss_pred CC-----------HHHH---HHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHH---HHHHH---CCEEEEEE-ECCC
T ss_conf 99-----------8999---999997899989999998997872464348999999---99965---89599986-4344
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHH
Q ss_conf 7412445687989999999999996868721423115651656899999809988997786651588898999
Q gi|254780485|r 241 GSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKD 313 (328)
Q Consensus 241 gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~ 313 (328)
||- .....+.++-++ .. . +..+.+++|--++ .+.. .....|++++++|.-+ -.+.-+.++.
T Consensus 171 Gt~-----~G~d~~l~~~i~--~~-~-~~pvi~sGGv~s~-~di~-~l~~~g~~gvivg~al-h~g~i~l~e~ 231 (233)
T cd04723 171 GSG-----QGPDLELLERLA--AR-A-DIPVIAAGGVRSV-EDLE-LLKKLGASGALVASAL-HDGGLTLEDV 231 (233)
T ss_pred CCC-----CCCCHHHHHHHH--HH-C-CCCEEEECCCCCH-HHHH-HHHHCCCCEEEEEHHH-HCCCCCHHHH
T ss_conf 656-----777999999999--86-8-9989998899999-9999-9997899899986397-7899788997
No 337
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=38.79 E-value=27 Score=14.98 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=45.8
Q ss_pred CCHHHHHHHHCCCCC--EEEEECCCCHHHH-HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEC--C--CCCHHHHHHH-
Q ss_conf 999999987415760--6975134377773-205888898999999999998798557707866--8--9899999999-
Q gi|254780485|r 146 LSFEQAQILSKAGLD--YYNHNIDTSERFY-PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILG--L--GEMIDDRIDM- 217 (328)
Q Consensus 146 ~~~~~~~~Lk~aG~~--~~~~~let~~~~~-~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G--~--gEt~eeri~~- 217 (328)
-+++.+..|++.|++ ++-+.-||.-.+. +. ..+..|+.|-+.+..+-++=-.+..++.+- + ||+.. +...
T Consensus 157 yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~-Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~-~y~~~ 234 (403)
T COG3867 157 YTKYVLTTMKKEGILPDMVQVGNETNGGFLWPD-GEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNS-LYRWI 234 (403)
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCCCEECCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-HHHHH
T ss_conf 999999999974899451675454677132467-8876768999999977656532489716999934788875-23588
Q ss_pred HHHHHHCCCCCCEEECCCEEECCCC
Q ss_conf 9999740888860205411204874
Q gi|254780485|r 218 LLTLANLSTPPESIPINLLIPIPGS 242 (328)
Q Consensus 218 l~~lr~l~~~~~~v~~~~~~p~~gt 242 (328)
...|-+-.+..+-|..+......||
T Consensus 235 fd~ltk~nvdfDVig~SyYpyWhgt 259 (403)
T COG3867 235 FDELTKRNVDFDVIGSSYYPYWHGT 259 (403)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 8788773898407763125434574
No 338
>TIGR02033 D-hydantoinase dihydropyrimidinase; InterPro: IPR011778 This entry represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme ..
Probab=37.35 E-value=28 Score=14.84 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHCCCC
Q ss_conf 99649838997303688874428999998876213688--3241025699999998741576
Q gi|254780485|r 100 AKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL--ETCMTLGMLSFEQAQILSKAGL 159 (328)
Q Consensus 100 ~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~--~i~~~~g~~~~~~~~~Lk~aG~ 159 (328)
..+.|++-|-+-.......--+-+.+.++++.+++.+- .+|+..|.+-.+..+++-+.|.
T Consensus 146 ~~~~Gi~SfK~fMAY~~~l~~~D~~L~~~L~~~~~~GA~~~VHAENgd~ia~~~~~~~a~G~ 207 (466)
T TIGR02033 146 LVEEGISSFKVFMAYKNLLMVDDEELFEILKRLKELGALLQVHAENGDVIAELQARLLAQGK 207 (466)
T ss_pred HHHCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 98625401025546142211575789999999875198178604630589999999996478
No 339
>PRK13137 consensus
Probab=36.89 E-value=28 Score=14.79 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHCCC-CC-CEEEE---C-CC-CCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999988762136-88-32410---2-56-9999999874157606975134377773205888898999999999998
Q gi|254780485|r 122 LSIIVDMIKGVKSL-GL-ETCMT---L-GM-LSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK 194 (328)
Q Consensus 122 ~~~~~e~i~~i~~~-~~-~i~~~---~-g~-~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328)
++.++++++.+++. .. .+.+. + .. -.+.-+++.+++|++.+++ |.-.+++--+..+.+++
T Consensus 85 l~~~l~~~~~~r~~~~~PivlM~Y~N~i~~yG~e~F~~~a~~aGvdGlIi-------------pDLP~eE~~~~~~~~~~ 151 (266)
T PRK13137 85 TRRTLELVRELRALTDTPLVIMTYLNPIYAVGPEEFMRLFQEAGVDGLIL-------------PDLPPDQDPEIADLAAE 151 (266)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEE-------------CCCCHHHHHHHHHHHHH
T ss_conf 77899999975556898789993458998758999999999769609994-------------79997888999999987
Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 79855770786689899999999999974088886020541120487412445687989999999999996868721423
Q gi|254780485|r 195 SGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLA 274 (328)
Q Consensus 195 ~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~ 274 (328)
.|+..- .++- --|.++|+..+....+ .++ ..+...|+.-.. ...+..+....+...|-.- .+++.
T Consensus 152 ~gi~~I--~lva-PtT~~eRi~~i~~~a~-----GFi---Y~Vs~~GvTG~r-~~~~~~~l~~~i~~ik~~t---~~Pv~ 216 (266)
T PRK13137 152 IGLAVT--FLIA-PTSTPERVKLVARACT-----GFL---YAVSVTGVTGMR-EGLALGEVPDMLRLARQYA---ALPVA 216 (266)
T ss_pred CCCCEE--EEEC-CCCCHHHHHHHHHHCC-----CCE---EEEECCCCCCCC-CCCCHHHHHHHHHHHHHCC---CCCEE
T ss_conf 599789--9937-9999999999996088-----828---997446766777-6678799999999998638---99879
Q ss_pred EHHHHHCHHHHHHHHHHCCCEEEECCEEEC--CCCCCHHHHHHHH
Q ss_conf 115651656899999809988997786651--5888989999999
Q gi|254780485|r 275 AGRAMMSDELQALCFFSGANSIFVGDTLLT--AKNPSYNKDTILF 317 (328)
Q Consensus 275 ~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t--~~g~~~~~~~~~i 317 (328)
.|-.--.++..+. +...||++++|.-++. ..|...++..+-+
T Consensus 217 vGFGIs~~e~~~~-~~~~aDGvIVGSaiV~~i~e~~d~~~~~~el 260 (266)
T PRK13137 217 VGFGVKDKATAAQ-VAQVADGVVVGSAFINAVEEGRDVAALAQEI 260 (266)
T ss_pred EECCCCCHHHHHH-HHHHCCEEEEHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9826698899999-9831999998099999999589899999999
No 340
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=36.88 E-value=28 Score=14.79 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCC-------CCCCHHHHHHHHHHHCCC---CCCEEEE------CCCCC-HHH
Q ss_conf 685799999999996498389973036888-------744289999988762136---8832410------25699-999
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREP-------KERDLSIIVDMIKGVKSL---GLETCMT------LGMLS-FEQ 150 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-------~~~~~~~~~e~i~~i~~~---~~~i~~~------~g~~~-~~~ 150 (328)
.+.+++......+...|++.+...+|..+. ...++.+-.++++.++.. +..+.+. +...+ +.+
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~niLaLrGD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~~~~d 149 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPSLEED 149 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHH
T ss_conf 99999999999999859863887358888778888888877467999999999975898500566687768774168899
Q ss_pred HHHH---HCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCC--CCCCEEE
Q ss_conf 9987---4157606975134377773205888898999999999998798--5577078
Q gi|254780485|r 151 AQIL---SKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGI--KVCCGGI 204 (328)
Q Consensus 151 ~~~L---k~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~--~~~sg~l 204 (328)
++.| .++|++.+.. .-. .+.+..++.++.+++.|+ ++-.|+|
T Consensus 150 i~~L~~K~~aGA~f~iT-----Q~~-------Fd~~~~~~f~~~~~~~Gi~vPIi~GIm 196 (274)
T cd00537 150 IKRLKRKVDAGADFIIT-----QLF-------FDNDAFLRFVDRCRAAGITVPIIPGIM 196 (274)
T ss_pred HHHHHHHHHHHHHHHHH-----HHE-------ECHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999999814266786-----443-------339999999999997499986563211
No 341
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=36.86 E-value=29 Score=14.79 Aligned_cols=177 Identities=18% Similarity=0.231 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE--E
Q ss_conf 68579999999999649838997303688874428999998876213688324102569999999874157606975--1
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNH--N 165 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~--~ 165 (328)
.+.+++.+ .+.+.|.--+.+ +|...-. ..++.++..++..+. .+.+..- +.+..++. -++|.+.. -
T Consensus 12 ~~~~~l~~---~~~~sgtDai~V-GGS~~~~-~~~~~~v~~ik~~~~-~~Pvilf--Pg~~~~is----~~aDa~lf~sl 79 (219)
T cd02812 12 LVDEEIAK---LAEESGTDAIMV-GGSDGVS-STLDNVVRLIKRIRR-PVPVILF--PSNPEAVS----PGADAYLFPSV 79 (219)
T ss_pred CCHHHHHH---HHHHHCCCEEEE-CCCCCCH-HHHHHHHHHHHHHCC-CCCEEEE--CCCHHHCC----CCCCEEEEEEE
T ss_conf 98899999---999769999999-3755744-779999999997378-9998995--79866568----67786886875
Q ss_pred CCC-CHHHHHCCCCCCCHHHHHHHHHHHHH--CCCCC--CCEEEECCC------------CCHHHHHHHHHHHHHCCCCC
Q ss_conf 343-77773205888898999999999998--79855--770786689------------89999999999997408888
Q gi|254780485|r 166 IDT-SERFYPHVTTTHTFEDRLQTLENVRK--SGIKV--CCGGILGLG------------EMIDDRIDMLLTLANLSTPP 228 (328)
Q Consensus 166 let-~~~~~~~~~~~~~~~~~l~~~~~a~~--~G~~~--~sg~l~G~g------------Et~eeri~~l~~lr~l~~~~ 228 (328)
+.+ .+... ...-++.....++ .++.+ +.-++++.+ .+.++.+.+.+.-+.++
T Consensus 80 lNs~n~~~l--------ig~~~~aa~~~~~~~~~~e~ip~gYiv~~~g~~v~~v~~a~~~~~~~~~~ayAlaae~lg--- 148 (219)
T cd02812 80 LNSGDPYWI--------IGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLG--- 148 (219)
T ss_pred ECCCCCHHH--------HHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC---
T ss_conf 338992367--------788999999874316763220057899879981488824647999899999999999829---
Q ss_pred CEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf 60205411204874124456879899999999999968687214231156516568999998099889977866
Q gi|254780485|r 229 ESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 229 ~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
+++..+- ..|+ +.++ .+|+..|=.+.+..+-..+|-- .++....++.+|||.+.+|+-+
T Consensus 149 --~~~iYLE-gSGa------~v~~----e~V~~vk~~l~~~~LivGGGIr--s~e~a~~~~~AgAD~IVvGn~i 207 (219)
T cd02812 149 --MPIVYLE-YSGA------YGPP----EVVRAVKKVLGDTPLIVGGGIR--SGEQAKEMAEAGADTIVVGNIV 207 (219)
T ss_pred --CCEEEEE-CCCC------CCCH----HHHHHHHHHCCCCEEEEECCCC--CHHHHHHHHHCCCCEEEECCCE
T ss_conf --9389995-6899------7999----9999999846797099928979--9999999998699999988722
No 342
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=36.66 E-value=29 Score=14.77 Aligned_cols=77 Identities=14% Similarity=-0.003 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCCCEEEECCCCCHHH---HHHHHCCCCCE
Q ss_conf 68579999999999649838997303688874428999998876213---6883241025699999---99874157606
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS---LGLETCMTLGMLSFEQ---AQILSKAGLDY 161 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~---~~~~i~~~~g~~~~~~---~~~Lk~aG~~~ 161 (328)
.+.|...+.++...+.|+.-+++.++..+-.....+...++++...+ ....+.+.+|..+.+. .+.-+++|+|.
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~~~~~~g~~~vi~g~g~~t~~~i~la~~a~~~Gada 97 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADG 97 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 79999999999999779999997933006212899999999999999818985174067631999999999999759999
Q ss_pred EEE
Q ss_conf 975
Q gi|254780485|r 162 YNH 164 (328)
Q Consensus 162 ~~~ 164 (328)
+.+
T Consensus 98 v~v 100 (289)
T cd00951 98 ILL 100 (289)
T ss_pred EEE
T ss_conf 997
No 343
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=36.13 E-value=29 Score=14.71 Aligned_cols=77 Identities=13% Similarity=-0.002 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCCCEEEECCCCCHHH---HHHHHCCCCCE
Q ss_conf 68579999999999649838997303688874428999998876213---6883241025699999---99874157606
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS---LGLETCMTLGMLSFEQ---AQILSKAGLDY 161 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~---~~~~i~~~~g~~~~~~---~~~Lk~aG~~~ 161 (328)
.+.+...+.++...+.|+.-+.+.++..+-.....+...++++...+ ....+.+.+|..+.+. .+..+++|+|.
T Consensus 23 iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~g~~~vi~gvg~~t~~ai~la~~a~~~Gad~ 102 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADG 102 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 79999999999999779998997830516665899999999999999838984151278612999999999998759997
Q ss_pred EEE
Q ss_conf 975
Q gi|254780485|r 162 YNH 164 (328)
Q Consensus 162 ~~~ 164 (328)
+.+
T Consensus 103 v~v 105 (296)
T TIGR03249 103 YLL 105 (296)
T ss_pred EEE
T ss_conf 897
No 344
>PRK13126 consensus
Probab=35.69 E-value=30 Score=14.67 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=71.7
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999874157606975134377773205888898999999999998798557707866898999999999999740888
Q gi|254780485|r 148 FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP 227 (328)
Q Consensus 148 ~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~ 227 (328)
++-+++.+++|++.+.+ | ..+-. -.++--+..+.+++.|+..- .+=---|.++|+..+.....
T Consensus 85 ~~f~~~~~~aGvdGlIi-----p----DLP~e-~~ee~~~~~~~~~~~gl~~I---~lv~ptt~~~ri~~i~~~s~---- 147 (237)
T PRK13126 85 AELFETAAEVGARGVLA-----P----DLLID-FPGDLERYLELSREYGLAPS---FFIPSKFPHRLLRRLASLEP---- 147 (237)
T ss_pred HHHHHHHHHCCCCEEEE-----C----CCCCC-CCHHHHHHHHHHHHCCCCEE---EEECCCCHHHHHHHHHHHCC----
T ss_conf 99999998749973883-----6----88877-81778999999997699779---97389983999999998589----
Q ss_pred CCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC
Q ss_conf 86020541120487412445687989999999999996868721423115651656899999809988997786651588
Q gi|254780485|r 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN 307 (328)
Q Consensus 228 ~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g 307 (328)
.++-+ -....-|+.+ +....+.+...|=..++ +++..|-.--.++.....+..|||++++|.-++..=.
T Consensus 148 -gfiYv-s~~gvTG~~~-------~~~~~~~i~~ir~~~~~--~Pv~vGFGI~t~e~~~~~~~~~aDGvIVGSaiV~~i~ 216 (237)
T PRK13126 148 -DFIYL-GLYAATGIEL-------PVYVERNVKTIRGLAGD--VYLVAGFAIDSPEKAARLVKAGADGVVVGTAFMRRLS 216 (237)
T ss_pred -CEEEE-EEECCCCCCC-------HHHHHHHHHHHHHHCCC--CCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf -87999-8652667641-------56799999999985789--9779994539999999998648999998789999999
Q ss_pred CCHHHHHHHHHH
Q ss_conf 898999999998
Q gi|254780485|r 308 PSYNKDTILFNR 319 (328)
Q Consensus 308 ~~~~~~~~~i~~ 319 (328)
.+.++-.+++++
T Consensus 217 ~~~~~~~~~v~~ 228 (237)
T PRK13126 217 SSVEEALSFLKE 228 (237)
T ss_pred HHHHHHHHHHHH
T ss_conf 755999999999
No 345
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=35.56 E-value=30 Score=14.65 Aligned_cols=158 Identities=11% Similarity=0.079 Sum_probs=76.5
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHH
Q ss_conf 89973036888744289999988762136-88324102569999999874157606975134377773205888898999
Q gi|254780485|r 107 RYCMGAAWREPKERDLSIIVDMIKGVKSL-GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDR 185 (328)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~ 185 (328)
-+.+|.++.+ .+.+.++.+.+.+. .-.|.+|+|.......+ .|.....+ ..| +.-
T Consensus 56 p~~~Ql~g~~-----p~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~----~g~Ga~Ll---~~p------------~~v 111 (231)
T cd02801 56 PLIVQLGGSD-----PETLAEAAKIVEELGADGIDLNMGCPSPKVTK----GGAGAALL---KDP------------ELV 111 (231)
T ss_pred EEEEEECCCC-----HHHHHHHHHHHHHCCCCEEEEECCCCHHHHCC----CCCCHHHH---HCH------------HHH
T ss_conf 0799875898-----99999999988753999999838999699708----98307876---297------------899
Q ss_pred HHHHHHHHH-CCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999999998-7985577078668989999999999997408888602054112048741244568798999999999999
Q gi|254780485|r 186 LQTLENVRK-SGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARI 264 (328)
Q Consensus 186 l~~~~~a~~-~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL 264 (328)
-++++..++ .+++++.-+=+|..+. ++..+.+..+.+-+. . .++=|+-|.-+...++-..|+++-+.-
T Consensus 112 ~~iv~~~~~~~~ipVsvKiRlg~~~~-~~~~~~~~~l~~~G~--~-----~ltvH~Rt~~q~~~~~a~~e~i~~~~~--- 180 (231)
T cd02801 112 AEIVRAVREAVPIPVTVKIRLGWDDE-EETLELAKALEDAGA--S-----ALTVHGRTREQRYSGPADWDYIAEIKE--- 180 (231)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCH-HHHHHHHHHHHHCCC--C-----EEEEECCCHHHCCCCCCCHHHHHHHHH---
T ss_conf 99999999756994799997077863-479999999997699--8-----999835614414677622699999986---
Q ss_pred HCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE
Q ss_conf 6868721423115651656899999809988997786
Q gi|254780485|r 265 LMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT 301 (328)
Q Consensus 265 ~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~ 301 (328)
.++..+..-++ ..--.+.....-..|++++|+|--
T Consensus 181 -~~~ipvi~NGd-I~s~~d~~~~~~~tg~dgvMigRg 215 (231)
T cd02801 181 -AVSIPVIANGD-IFSLEDALRCLEQTGVDGVMIGRG 215 (231)
T ss_pred -CCCCEEEEECC-CCCHHHHHHHHHHHCCCEEEECHH
T ss_conf -59977998389-099999999998509999998788
No 346
>pfam02219 MTHFR Methylenetetrahydrofolate reductase. This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known to be a TIM barrel.
Probab=35.52 E-value=30 Score=14.65 Aligned_cols=185 Identities=20% Similarity=0.238 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-------CCCCHHHHHHHHHHHCCC-C--CCEEEE------CCCCC-HH
Q ss_conf 0685799999999996498389973036888-------744289999988762136-8--832410------25699-99
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREP-------KERDLSIIVDMIKGVKSL-G--LETCMT------LGMLS-FE 149 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-------~~~~~~~~~e~i~~i~~~-~--~~i~~~------~g~~~-~~ 149 (328)
-.+..++......+...|++.++..+|..+. +..++.+..++++.++.. + ..+.+. +...+ +.
T Consensus 80 d~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~f~igva~yPe~hp~a~~~~~ 159 (286)
T pfam02219 80 DMNKEELDDALEDAKALGIRNILALRGDPPKGGDHWEKPEGGFKYALDLVRLIRQEYGDYFDIGVAAYPEGHPEAKSWQA 159 (286)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 79899999999999985988587614889887777789986633399999999973598777554558877865121999
Q ss_pred HHHHH---HCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC--CCCHHHHHHHHHHHHHC
Q ss_conf 99987---41576069751343777732058888989999999999987985577078668--98999999999999740
Q gi|254780485|r 150 QAQIL---SKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL--GEMIDDRIDMLLTLANL 224 (328)
Q Consensus 150 ~~~~L---k~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~--gEt~eeri~~l~~lr~l 224 (328)
++.+| .++|++... | .-. .+.+...+.++.+++.|+.+ -++.|+ ..+.. .+.++.++
T Consensus 160 di~~L~~Ki~aGA~f~i----T-Q~~-------fd~~~~~~f~~~~~~~Gi~~--PIi~GI~Pi~s~~----~~~~~~~~ 221 (286)
T pfam02219 160 DLKYLKEKVDAGADFII----T-QLF-------FDVDNFLRFVDRCRAAGIDI--PIIPGIMPITSYK----SLKRIAKL 221 (286)
T ss_pred HHHHHHHHHHCCCHHHH----H-HHE-------ECHHHHHHHHHHHHHCCCCC--EEECCCEEECCHH----HHHHHHHH
T ss_conf 99999999984610536----4-353-------24999999999999749982--0421521114688----99999973
Q ss_pred CCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEEC
Q ss_conf 88886020541120487412445687989999999999996868721423115651656899999809988997786651
Q gi|254780485|r 225 STPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLT 304 (328)
Q Consensus 225 ~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t 304 (328)
.++.+|...-. .|+... +..+..+-+ .|.+ ..+..+..+..|++++-. -|
T Consensus 222 ----~Gi~iP~~l~~---~l~~~~--~~~e~~~~~----------gi~~-------a~e~~~~l~~~Gv~GiH~----yt 271 (286)
T pfam02219 222 ----SGVSIPQELID---RLEPIK--DDDEAVKSI----------GIEL-------AVEMCKKLLAEGVPGLHF----YT 271 (286)
T ss_pred ----CCCCCCHHHHH---HHHHCC--CCHHHHHHH----------HHHH-------HHHHHHHHHHCCCCEEEE----EC
T ss_conf ----59989499999---998547--999999999----------9999-------999999999779986699----50
Q ss_pred CCCCCHHHHHHHHHHCC
Q ss_conf 58889899999999829
Q gi|254780485|r 305 AKNPSYNKDTILFNRLG 321 (328)
Q Consensus 305 ~~g~~~~~~~~~i~~~G 321 (328)
- | ..+-..+.++++|
T Consensus 272 ~-N-~~~~~~~Il~~lG 286 (286)
T pfam02219 272 L-N-REEAILEILEQLG 286 (286)
T ss_pred C-C-CHHHHHHHHHHCC
T ss_conf 8-9-7599999999729
No 347
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=35.05 E-value=30 Score=14.60 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC-------CCHHHHHHHHHHHCCCCCCEE
Q ss_conf 00068579999999999649838997303688874-------428999998876213688324
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE-------RDLSIIVDMIKGVKSLGLETC 140 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~-------~~~~~~~e~i~~i~~~~~~i~ 140 (328)
-+..+.+.++++++.+.+.|++.+.+-.... .+. .+-..+..+|+.+|+.++.+.
T Consensus 45 i~R~sid~l~~~v~~~~~lGI~av~LFpvp~-~Kd~~gseA~n~~glv~raIr~iK~~fpdl~ 106 (314)
T cd00384 45 VYRLSVDSLVEEAEELADLGIRAVILFGIPE-HKDEIGSEAYDPDGIVQRAIRAIKEAVPELV 106 (314)
T ss_pred CEEECHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 5032899999999999987998899638988-8997755346986589999999999779868
No 348
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=35.03 E-value=30 Score=14.60 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=18.9
Q ss_pred HHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCCCCEEE
Q ss_conf 9998876213-68832410256999999987415760697
Q gi|254780485|r 125 IVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 125 ~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328)
+.++|+..|. .+....+.+-..+.|++.+--+||+|-+.
T Consensus 172 ~~~Av~~aR~~~~~~~kiEVEVenlE~a~eA~~AGADiIm 211 (276)
T TIGR00078 172 IEKAVKRARAALPFAKKIEVEVENLEEAEEAAEAGADIIM 211 (276)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCEEE
T ss_conf 8999999998489980799862898999999970995998
No 349
>PRK13122 consensus
Probab=34.37 E-value=31 Score=14.53 Aligned_cols=194 Identities=15% Similarity=0.144 Sum_probs=102.7
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCC-CC---------------CHHHHHHHHHHHCCC-C-CCEEEECCCC-------CH
Q ss_conf 9999999964983899730368887-44---------------289999988762136-8-8324102569-------99
Q gi|254780485|r 94 LKEAKNAKENGATRYCMGAAWREPK-ER---------------DLSIIVDMIKGVKSL-G-LETCMTLGML-------SF 148 (328)
Q Consensus 94 ~~~a~~~~~~G~~~~~l~~~~~~~~-~~---------------~~~~~~e~i~~i~~~-~-~~i~~~~g~~-------~~ 148 (328)
.+.++.+.+.|+.-+-++--.-+|. +. .++.+.+.++.++.. . +.+.+ +.. .+
T Consensus 16 ~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~l~~~r~~~~~pivlM--~Y~N~i~~~G~~ 93 (242)
T PRK13122 16 IENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCNYVLM--TYYNIICHYGEQ 93 (242)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEE--EECHHHHHHCHH
T ss_conf 999999997599999978988886665899999999999769989999999997313679877999--851698872799
Q ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99998741576069751343777732058888989999999999987985577078668989999999999997408888
Q gi|254780485|r 149 EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPP 228 (328)
Q Consensus 149 ~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~ 228 (328)
.-+++.+++|++.+.+ |.-.+++--+..+.+++.|+.. +.+=-.-|.++|+..+.....
T Consensus 94 ~F~~~~~~~GvdGvIi-------------pDLP~ee~~~~~~~~~~~gi~~---I~lvaPtt~~~Ri~~i~~~s~----- 152 (242)
T PRK13122 94 AFFEKCRDTGVYGLII-------------PDLPYELSQRLKQQFSHYGVKI---ISLVAMTTDDKRIKDIVSHAE----- 152 (242)
T ss_pred HHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHCCCCE---EEEECCCCCHHHHHHHHHHCC-----
T ss_conf 9999998769986777-------------8998788999999998679868---987189998999999998299-----
Q ss_pred CEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEEC--CC
Q ss_conf 6020541120487412445687989999999999996868721423115651656899999809988997786651--58
Q gi|254780485|r 229 ESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLT--AK 306 (328)
Q Consensus 229 ~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t--~~ 306 (328)
.++ ..+...|+.-..... ..+....+.-.|=.- .+++..|..--.++..+. +..+||++++|..++. ..
T Consensus 153 GFi---Y~vs~~GvTG~~~~~--~~~~~~~i~~ik~~t---~~Pv~vGFGI~~~e~v~~-i~~~ADGvIVGSaivk~i~~ 223 (242)
T PRK13122 153 GFI---YTVTMNATTGQNGAF--HPELKRKIESIKAIA---NVPVVAGFGIRTPQHVAD-IKEVADGIVIGSEIVKRFKS 223 (242)
T ss_pred CCE---EEEECCCCCCCCCCC--CHHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHH-HHHHCCEEEECHHHHHHHHH
T ss_conf 966---987335435765556--588999999999725---998587158799999999-98119999984899999996
Q ss_pred CCCHHHHHHHHHHC
Q ss_conf 88989999999982
Q gi|254780485|r 307 NPSYNKDTILFNRL 320 (328)
Q Consensus 307 g~~~~~~~~~i~~~ 320 (328)
+ +.++..+.|+++
T Consensus 224 ~-~~e~~~~~i~~l 236 (242)
T PRK13122 224 N-TREEIIKYLQSI 236 (242)
T ss_pred C-CHHHHHHHHHHH
T ss_conf 7-989999999999
No 350
>PRK13139 consensus
Probab=33.96 E-value=32 Score=14.48 Aligned_cols=200 Identities=14% Similarity=0.104 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC---------------CHHHHHHHHHHHCCC-CCC-EEEE---C--CC
Q ss_conf 857999999999964983899730368887-44---------------289999988762136-883-2410---2--56
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPK-ER---------------DLSIIVDMIKGVKSL-GLE-TCMT---L--GM 145 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~---------------~~~~~~e~i~~i~~~-~~~-i~~~---~--g~ 145 (328)
+.|.-++.++.+.+.|+.-+-++-=.-+|. +. .++.+.++++.+++. ... +.+. + ..
T Consensus 28 ~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~~~~~~~pivlM~Y~N~i~~~ 107 (254)
T PRK13139 28 SLQANREVIRAMVAGGVDLMELQIPFSEPMADGPVILKANQAALAGGFKVRECFDFAREVVAAFNIPFLFMTYYNILFKY 107 (254)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHC
T ss_conf 97999999999996699999978988886665899999999999769979999999999972489768999525999870
Q ss_pred CCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998741576069751343777732058888989999999999987985577078668989999999999997408
Q gi|254780485|r 146 LSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 146 ~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~ 225 (328)
-.+.-+++.+++|++.+++ |.-.+++.-+..+.+++.|+..-. ++-. -|.++|+..+....+
T Consensus 108 G~e~F~~~~~~~Gv~GvIi-------------pDLP~eE~~~~~~~~~~~gl~~I~--lvaP-tt~~~Ri~~i~~~a~-- 169 (254)
T PRK13139 108 GVERFIDEVADIGVKGLIV-------------PDLPPEQAQDYIAQCRAKGMAPIG--IYAP-TSTDERMGKIAAAAD-- 169 (254)
T ss_pred CHHHHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHCCCCEEE--EECC-CCCHHHHHHHHHCCC--
T ss_conf 9999999999759985864-------------799978899999999846975799--9458-999899999985169--
Q ss_pred CCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE--
Q ss_conf 888602054112048741244568798999999999999686872142311565165689999980998899778665--
Q gi|254780485|r 226 TPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL-- 303 (328)
Q Consensus 226 ~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~-- 303 (328)
.++ ..+...|+.-... .-+.+....+...|-.- .+++..|-.--.++. -..+..+|+++++|..++
T Consensus 170 ---gFi---Y~vs~~GvTG~~~--~~~~~~~~~i~~ik~~t---~~Pv~vGFGI~~~e~-v~~~~~~aDGvIVGSaiVk~ 237 (254)
T PRK13139 170 ---GFI---YCVARRGVTGSKT--SFDEHVGAFLHRCRAAT---PLPLAVGFGVKSAAD-VDYLKGKADIAVVGSQAIRL 237 (254)
T ss_pred ---CEE---EEEECCCCCCCCC--CCHHHHHHHHHHHHHCC---CCCEEEECCCCCHHH-HHHHHCCCCEEEECHHHHHH
T ss_conf ---869---9996666679886--64588999999998558---998799737799999-99997169999988899999
Q ss_pred -CCCCCCHHHHHHHHHHC
Q ss_conf -15888989999999982
Q gi|254780485|r 304 -TAKNPSYNKDTILFNRL 320 (328)
Q Consensus 304 -t~~g~~~~~~~~~i~~~ 320 (328)
..+ ..+...++++++
T Consensus 238 ie~~--g~~~v~~f~~~l 253 (254)
T PRK13139 238 FDEA--GAAAVEPFFRSL 253 (254)
T ss_pred HHHC--CHHHHHHHHHHH
T ss_conf 9975--999999999970
No 351
>cd00513 Ribosomal_L32_L32e Ribosomal_L32_L32e: L32 is a protein from the large subunit that contains a surface-exposed globular domain and a finger-like projection that extends into the RNA core to stabilize the tertiary structure. L32 does not appear to play a role in forming the A (aminacyl), P (peptidyl) or E (exit) sites of the ribosome, but does interact with 23S rRNA, which has a "kink-turn" secondary structure motif. L32 is overexpressed in human prostate cancer and has been identified as a stably expressed housekeeping gene in macrophages of human chronic obstructive pulmonary disease (COPD) patients. In Schizosaccharomyces pombe, L32 has also been suggested to play a role as a transcriptional regulator in the nucleus. Found in archaea and eukaryotes, this protein is known as L32 in eukaryotes and L32e in archaea.
Probab=33.50 E-value=32 Score=14.44 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCEEEEE----CCC-C---HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 883241025699999998741576069751----343-7---7773205888898999999999998798557
Q gi|254780485|r 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHN----IDT-S---ERFYPHVTTTHTFEDRLQTLENVRKSGIKVC 200 (328)
Q Consensus 136 ~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~----let-~---~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~ 200 (328)
+.....++|.-+....+-|.-.|...+.+. ||. . +.....+..+.+...+.++++.|.++|+++.
T Consensus 34 g~~~~p~iGYgs~k~~Rgl~PsG~~~vlV~n~~dLe~l~~~n~~~aa~Ia~~Vg~kKR~~I~erA~el~ikV~ 106 (107)
T cd00513 34 GKPAMPKIGYGSPKKTRGLHPSGFKKVLVHNVKELEVLDMHNRTYAARIAHTVGARKRKEIVERAKELGIKVL 106 (107)
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCEEEEECCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8667876677877766577978888888669889888603597069998354233379999999999698815
No 352
>PRK01362 putative translaldolase; Provisional
Probab=33.36 E-value=32 Score=14.42 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=55.4
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCH
Q ss_conf 32058888989999999999987985577078668989999999999997408888602054112048741244568798
Q gi|254780485|r 173 YPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDP 252 (328)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~ 252 (328)
+-+++-+ .+.+++++.+.+.|++++.|.+|-. .+. ......+..+ |+ +|. | ++.+...-..
T Consensus 81 ~VKIP~t---~~Gl~ai~~L~~~Gi~vn~Tai~s~----~Qa----~~Aa~aga~y--is--py~---g-R~~d~G~Dg~ 141 (214)
T PRK01362 81 VVKIPMT---TEGLKAVKALSKEGIKTNVTLCFSA----NQA----LLAAKAGATY--VS--PFV---G-RLDDIGTDGM 141 (214)
T ss_pred EEECCCC---HHHHHHHHHHHHCCCCEEEEECCCH----HHH----HHHHHCCCCE--EE--EEC---C-HHHHCCCCHH
T ss_conf 9981896---6699999999984997576645889----999----9998759968--98--631---2-1865589828
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEE
Q ss_conf 99999999999968687214231156516568999998099889
Q gi|254780485|r 253 IEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSI 296 (328)
Q Consensus 253 ~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~ 296 (328)
.....+..+..-.-.++.|-.++-|.. ..-..++.+||+.+
T Consensus 142 ~~i~~i~~~~~~~~~~tkIL~AS~r~~---~~i~~a~~~G~~~i 182 (214)
T PRK01362 142 ELIEDIREIYDNYGFETEIIAASVRHP---MHVLEAALIGADIA 182 (214)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCH---HHHHHHHHCCCCEE
T ss_conf 999999999996399813752003889---99999998699999
No 353
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=33.27 E-value=32 Score=14.41 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=45.0
Q ss_pred HHHHHHHCCCCCEEEEECCC--C----------------HHHHHCCCCCCCHHH-HHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 99998741576069751343--7----------------777320588889899-9999999998798557707866898
Q gi|254780485|r 149 EQAQILSKAGLDYYNHNIDT--S----------------ERFYPHVTTTHTFED-RLQTLENVRKSGIKVCCGGILGLGE 209 (328)
Q Consensus 149 ~~~~~Lk~aG~~~~~~~let--~----------------~~~~~~~~~~~~~~~-~l~~~~~a~~~G~~~~sg~l~G~gE 209 (328)
....+++++|-.-|.-.+.| + ..+-..+-.+....- -=.+++.|+++|+++-+- =+|
T Consensus 405 ~iI~r~ReaG~~IyIDDFGTGYSnL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaE----GVE 480 (524)
T COG4943 405 PIILRLREAGHEIYIDDFGTGYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAE----GVE 480 (524)
T ss_pred HHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCCEECCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEE----CCC
T ss_conf 9999998669869973576760247788539950500007898764358641113899999998759727750----113
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999999999999740888860205411204874124456879899999999
Q gi|254780485|r 210 MIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIIS 260 (328)
Q Consensus 210 t~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iA 260 (328)
|.|+. ..||..++++. -.+|. .+++++.+++.+..
T Consensus 481 teeQ~----~~LR~~Gv~~g---QGW~f---------skaLp~q~Fi~~~~ 515 (524)
T COG4943 481 TEEQV----DWLRKRGVHYG---QGWLF---------SKALPAQAFLDWAE 515 (524)
T ss_pred HHHHH----HHHHHCCCCCC---CCCCC---------CCCCCHHHHHHHHH
T ss_conf 78999----99997497423---44004---------78889899999998
No 354
>KOG1643 consensus
Probab=33.23 E-value=32 Score=14.41 Aligned_cols=157 Identities=15% Similarity=0.219 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEE------ECCCCC-HHHHHHHHCCCCCE
Q ss_conf 85799999999996498389973036888744289999988762136883241------025699-99999874157606
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCM------TLGMLS-FEQAQILSKAGLDY 161 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~------~~g~~~-~~~~~~Lk~aG~~~ 161 (328)
|..+|.+....+.-.+-.++++. |+.-++.|.-.+++ ..+.+.. .-|..+ +.....++++|+..
T Consensus 19 s~~eii~~ln~a~~~~~vevvi~-----pP~~Yl~~ak~~l~----~~i~v~aQn~~~~k~GafTGEiS~~mlkd~G~~w 89 (247)
T KOG1643 19 SIKEIIKTLNAAKLPANVEVVIA-----PPAPYLDYAKSKLK----PDIGVAAQNCYKVKSGAFTGEISAEMLKDLGAEW 89 (247)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEE-----CCHHHHHHHHHHCC----CCCEEECCEEEECCCCCCCCCCCHHHHHHCCCCE
T ss_conf 99999998665117888768980-----88258999987477----5335621211203676634756899998679978
Q ss_pred EEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH--HHH-------HHHH-CCCCCCEE
Q ss_conf 9751343777732058888989999999999987985577078668989999999--999-------9974-08888602
Q gi|254780485|r 162 YNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRID--MLL-------TLAN-LSTPPESI 231 (328)
Q Consensus 162 ~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~--~l~-------~lr~-l~~~~~~v 231 (328)
+.+..---+..|.+ +-+---+-.+.|..-|+++ +.=+||+.+||-. ++. .+.+ .+....-+
T Consensus 90 VIlGHSERR~~fgE-----sd~~i~~K~~~Al~eGl~V----iaCIGE~leeREaG~t~dVv~~Ql~aiad~v~~w~niv 160 (247)
T KOG1643 90 VILGHSERRHVFGE-----SDEFIADKTAHALAEGLKV----IACIGETLEEREAGKTLDVVFRQLKAIADKVKDWSNIV 160 (247)
T ss_pred EEECCHHHHHHHCC-----CHHHHHHHHHHHHHCCCEE----EEEECCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99544666435077-----3478999999999758759----99946627766348627899999999998547864328
Q ss_pred -ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf -0541120487412445687989999999999996868
Q gi|254780485|r 232 -PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 232 -~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~ 268 (328)
..-|... -|| -..+||+..--+++-.|-.+-+
T Consensus 161 iAYEPVWA-IGT----Gk~atp~QaqEVh~~iR~wl~~ 193 (247)
T KOG1643 161 IAYEPVWA-IGT----GKTATPEQAQEVHAEIRKWLKS 193 (247)
T ss_pred EEEECEEE-ECC----CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98503366-517----8779878999999999999863
No 355
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=33.16 E-value=33 Score=14.40 Aligned_cols=212 Identities=12% Similarity=0.132 Sum_probs=87.6
Q ss_pred CCCCCHHHHHHH----HHHHHHCCCEEEEEECCCCCCCCCC-----HHHHHHHHHHHC-CCCCCEEEECC-CCCHHHHHH
Q ss_conf 000685799999----9999964983899730368887442-----899999887621-36883241025-699999998
Q gi|254780485|r 85 SKLINVDQVLKE----AKNAKENGATRYCMGAAWREPKERD-----LSIIVDMIKGVK-SLGLETCMTLG-MLSFEQAQI 153 (328)
Q Consensus 85 ~~~~~~Eei~~~----a~~~~~~G~~~~~l~~~~~~~~~~~-----~~~~~e~i~~i~-~~~~~i~~~~g-~~~~~~~~~ 153 (328)
|+--+.|+|.+. |..+.+.|+.-+.+---+..|..++ ...+.-+++.++ +..+.+.+|.- --....+..
T Consensus 24 ~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~I 103 (263)
T COG0434 24 YDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALAI 103 (263)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
T ss_conf 55678799999999899999848976899713578877777974788999999999987507661032102662888999
Q ss_pred HHCCCCCEEEEECCCCHHHHHC-CCCCCCHHHHHHHHHHHHHCC--CCCCCEEEECCCCCHHHHHHHHHHHHH-CC-CCC
Q ss_conf 7415760697513437777320-588889899999999999879--855770786689899999999999974-08-888
Q gi|254780485|r 154 LSKAGLDYYNHNIDTSERFYPH-VTTTHTFEDRLQTLENVRKSG--IKVCCGGILGLGEMIDDRIDMLLTLAN-LS-TPP 228 (328)
Q Consensus 154 Lk~aG~~~~~~~let~~~~~~~-~~~~~~~~~~l~~~~~a~~~G--~~~~sg~l~G~gEt~eeri~~l~~lr~-l~-~~~ 228 (328)
-+..|.+.+-.|+-|.-..-++ +..+. --++++.-+.+| +++-+-+.+-|+-..-++ ..-..+++ +. ...
T Consensus 104 A~a~gA~FIRVN~~tg~~~tdqGiieg~----A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~-~~~~~v~dtver~~a 178 (263)
T COG0434 104 AYAVGADFIRVNVLTGAYATDQGIIEGN----AAELARYRARLGSRVKVLADVHVKHAVHLGNR-SLEEAVKDTVERGLA 178 (263)
T ss_pred HHHCCCCEEEEEEEECEEECCCCCCCCH----HHHHHHHHHHCCCCCEEEEECHHHCCCCCCCC-CHHHHHHHHHHCCCC
T ss_conf 9860797799873434276356501444----88999989861677379761113215323786-889999999970488
Q ss_pred CEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCC
Q ss_conf 60205411204874124456879899999999999968687214231156516568999998099889977866515888
Q gi|254780485|r 229 ESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNP 308 (328)
Q Consensus 229 ~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~ 308 (328)
+.|.+.-. . .-.+++. +.|+.+.-+.= +| -+.+|= ..++.....|.. |||.++|-++ ..+|.
T Consensus 179 DaVI~tG~----~----TG~~~d~-~el~~a~~~~~-~p----vlvGSG--v~~eN~~~~l~~-adG~IvgT~l-K~~G~ 240 (263)
T COG0434 179 DAVIVTGS----R----TGSPPDL-EELKLAKEAVD-TP----VLVGSG--VNPENIEELLKI-ADGVIVGTSL-KKGGV 240 (263)
T ss_pred CEEEEECC----C----CCCCCCH-HHHHHHHHCCC-CC----EEEECC--CCHHHHHHHHHH-CCCEEEEEEE-CCCCE
T ss_conf 77999566----6----7899998-99999986269-87----897368--888899999987-2866997866-03886
Q ss_pred -----CHHHHHHHHHH
Q ss_conf -----98999999998
Q gi|254780485|r 309 -----SYNKDTILFNR 319 (328)
Q Consensus 309 -----~~~~~~~~i~~ 319 (328)
..++..++++.
T Consensus 241 ~~n~VD~~Rv~~~v~~ 256 (263)
T COG0434 241 TWNPVDLERVRRFVEA 256 (263)
T ss_pred ECCCCCHHHHHHHHHH
T ss_conf 3684599999999999
No 356
>pfam10443 RNA12 RNA12 protein. This family includes RNA12 from S. cerevisiae. That protein contains an RRM domain. This region is C-terminal to that and includes a P-loop motif suggesting this region binds to NTP. The RNA12 proteins is involved in pre-rRNA maturation.
Probab=33.14 E-value=33 Score=14.40 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 857999999999964983899730368887442899999887621368832410256999999987
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQIL 154 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~L 154 (328)
-.+.+.++|-.....++-|+.+.+..-.. . . .+-+.+.. -+.-.+++|..+.+..+..
T Consensus 167 iy~~laeWAa~Lvq~niAHVIFLT~Dv~~-~---k---~LskaLPn-~vf~tI~L~Das~~~ak~y 224 (428)
T pfam10443 167 VYDKLAEWAASLVQSNIAHVIFLTEDVSA-G---K---PLSKALPN-QVFKTISLGDASPDVARNY 224 (428)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCC-C---H---HHHHHCCC-CCEEEEECCCCCHHHHHHH
T ss_conf 79999999999873571269997799851-1---4---47875797-5012654145898999999
No 357
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=32.75 E-value=33 Score=14.36 Aligned_cols=123 Identities=13% Similarity=0.107 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCC----------CCCCCCCHHHHHHHHHHHCC-CCCCEEE--ECCCCC-----HH
Q ss_conf 685799999999996498389973036----------88874428999998876213-6883241--025699-----99
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAW----------REPKERDLSIIVDMIKGVKS-LGLETCM--TLGMLS-----FE 149 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~----------~~~~~~~~~~~~e~i~~i~~-~~~~i~~--~~g~~~-----~~ 149 (328)
.++|++.+.|+.+.+.|+..+-|-.|= ..-...+.+...++++.+++ ....+.+ -+|.-. .+
T Consensus 74 ~dp~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~~~~~~ 153 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEE 153 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 99999999999887649998943189998997079836506339899999999997344874699984688852243999
Q ss_pred HHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 9998741576069751343777732058888989999999999987985577078668989999999999
Q gi|254780485|r 150 QAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLL 219 (328)
Q Consensus 150 ~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~ 219 (328)
..+.+.++|++.+.+---|....|.. ..+|+. +..+ .....+++ +.=|=+-+.+|..+++.
T Consensus 154 ~~~~~e~aG~~~itvHgRT~~q~y~g---~adw~~-i~~v--k~~~~iPv---i~NGDI~~~~da~~~l~ 214 (321)
T PRK10415 154 IAQLAEDCGIQALTIHGRTRACLFNG---EAEYDS-IRAV--KQKVSIPV---IANGDITDPLKARAVLD 214 (321)
T ss_pred HHHHHHHCCCCEEEEEHHHHHHHHCC---CCCHHH-HHHH--HHCCCCCE---EECCCCCCHHHHHHHHH
T ss_conf 99999856988999972213443169---987799-9999--85479978---96589199999999998
No 358
>PRK08350 hypothetical protein; Provisional
Probab=32.67 E-value=33 Score=14.35 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECC--CCCHHHHHHHH
Q ss_conf 989999999999987985577078668--98999999999
Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKVCCGGILGL--GEMIDDRIDML 218 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~G~~~~sg~l~G~--gEt~eeri~~l 218 (328)
|.-+-+++++.|++.|+.+ ++-| |||....+.||
T Consensus 266 TlTETleai~lA~~~g~~~----viSHRSGETEDt~IADL 301 (341)
T PRK08350 266 TLTDLYNFVNDVKSEKITP----ILAEAKYEPADETLPHL 301 (341)
T ss_pred EHHHHHHHHHHHHHCCCEE----EEECCCCCCCCCHHHHH
T ss_conf 2999999999999879948----99857898640169999
No 359
>TIGR00238 TIGR00238 lysine 2,3-aminomutase YodO family protein; InterPro: IPR003739 This family represents essentially the whole of the Escherichia coli YjeK family and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is a longer protein by an additional 100 residues, is characterised as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups . The homologue, MJ0634 from M. jannaschii, is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins..
Probab=32.46 E-value=33 Score=14.32 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCHHHHHHHHHHHCCC
Q ss_conf 07868342321243---354777564100068579999999999649838997303688874--4289999988762136
Q gi|254780485|r 61 KTGGCPENCGYCNQ---SVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE--RDLSIIVDMIKGVKSL 135 (328)
Q Consensus 61 ~TN~C~~~C~fCaf---~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~--~~~~~~~e~i~~i~~~ 135 (328)
.++.|..+|.||.- -++........ ...+.............-..-++.+|+.+... ..+++++.-++.+...
T Consensus 137 ~~~~c~~~c~yc~~~w~~~~~~~~~~~g--~p~~~~~~~~~~~~~~~~~~~~~~~ggdp~~~~d~~~~~~~~~~~~~~~~ 214 (357)
T TIGR00238 137 PKGGCAVNCRYCFRNWLVRHFPYKEGPG--NPKKKWEAALDYIAEHPELEEVLFSGGDPLLLKDHELEWLLKELESIPHL 214 (357)
T ss_pred ECCCCCHHHHHHHHCCHHCCCCCCCCCC--CCHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 4166402233333200110045100367--73678999999874041023320107876310057899999987533401
Q ss_pred -CCCEEEEC-----CCCCHHHHHHHHCCCCCEEE-EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCE-E-EEC
Q ss_conf -88324102-----56999999987415760697-513437777320588889899999999999879855770-7-866
Q gi|254780485|r 136 -GLETCMTL-----GMLSFEQAQILSKAGLDYYN-HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCG-G-ILG 206 (328)
Q Consensus 136 -~~~i~~~~-----g~~~~~~~~~Lk~aG~~~~~-~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg-~-l~G 206 (328)
.+.++... .-.+++....+.+.-..... ..+++. ..-.+...+.++.....|+.+..- + +-|
T Consensus 215 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 285 (357)
T TIGR00238 215 EGLRIGTRLPVVIPQRITDELCELLGKFELPLLLVTHINHC---------NEITEEFAEAVEKLRTVGVTLLNQSVLLRG 285 (357)
T ss_pred HEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHEEECCCCC---------HHCCHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 00220232201100466899999875332211000002430---------110378999999887526500001322111
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 89899999999999974088886020541120487412445687989999999999996868
Q gi|254780485|r 207 LGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 207 ~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~ 268 (328)
..+..+-.......+.+.+. .|...+.+ .+..-...-..+..+.++.+--.+-..+.
T Consensus 286 ~~~~~~~~~~l~~~l~~~g~----~pyy~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 342 (357)
T TIGR00238 286 VNDSAPILAKLSDALFKVGV----LPYYLHLL-DGVEGAGHFLVPDAEALQIVKELAGLTSG 342 (357)
T ss_pred HCCHHHHHHHHHHHHHHHCC----CHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 01115789998887876301----02322220-00110112220167889999888751353
No 360
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=32.34 E-value=34 Score=14.31 Aligned_cols=76 Identities=12% Similarity=-0.019 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCCCEEEECCCCCHHH---HHHHHCCCCCE
Q ss_conf 6857999999999964983899730368887442899999887621---36883241025699999---99874157606
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK---SLGLETCMTLGMLSFEQ---AQILSKAGLDY 161 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~---~~~~~i~~~~g~~~~~~---~~~Lk~aG~~~ 161 (328)
.+.+.+.+.++...+.|+.-+++.++..+-.....+...++++... .....+.+.+|..+.+. .+.-+++|+|.
T Consensus 19 iD~~~l~~~v~~li~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~v~~~~grvpvi~gvg~~t~~ai~la~~A~~~Gada 98 (296)
T PRK03620 19 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVEACAGRVPVIAGAGGGTAQAIEYAQAAERAGADG 98 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 59999999999999779998996842313434899999999999999838973598257753799999999999829998
Q ss_pred EE
Q ss_conf 97
Q gi|254780485|r 162 YN 163 (328)
Q Consensus 162 ~~ 163 (328)
+.
T Consensus 99 i~ 100 (296)
T PRK03620 99 IL 100 (296)
T ss_pred EE
T ss_conf 99
No 361
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=32.18 E-value=34 Score=14.29 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=49.7
Q ss_pred CCCH-HHHHHHH-HHHHHCCCCCCCEEE---ECCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECCCCC-------
Q ss_conf 8898-9999999-999987985577078---668989999999999997408888602---054112048741-------
Q gi|254780485|r 179 THTF-EDRLQTL-ENVRKSGIKVCCGGI---LGLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIPGSK------- 243 (328)
Q Consensus 179 ~~~~-~~~l~~~-~~a~~~G~~~~sg~l---~G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~gt~------- 243 (328)
..+| ..|++-+ +.+..+..|+ | +|.|=+.+ .+..|.++++.+--| .=--|..+++-+
T Consensus 169 Dr~F~~G~l~~i~~~~~~~~vPV----IvKEvG~G~S~e----~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~ 240 (349)
T TIGR02151 169 DRNFSKGWLEKIAEICSAVSVPV----IVKEVGFGISKE----VAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQ 240 (349)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCE----EEEECCCCCCHH----HHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 70156538999999996528987----998215799889----9999987890088707876755999998875157523
Q ss_pred --------CCCCCCCCHHHHHHHHHHHHH-HCCCCCCEEEEHHHHHCHHHHHHHHHHCCC
Q ss_conf --------244568798999999999999-686872142311565165689999980998
Q gi|254780485|r 244 --------FEENKKVDPIEHVRIISVARI-LMPKSRLRLAAGRAMMSDELQALCFFSGAN 294 (328)
Q Consensus 244 --------l~~~~~~~~~e~lr~iAi~RL-~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN 294 (328)
|.+...+ .+..+.=.|= ..|+..|-.|+|- +-|-|+ -+||--||+
T Consensus 241 ~~~r~a~~f~~WGip----T~~sL~~~~~~~~~~~~~iASGG~-r~GlD~-AKAlALGA~ 294 (349)
T TIGR02151 241 KYERLASAFSDWGIP----TAASLLEVRSIDAPDAPLIASGGL-RTGLDV-AKALALGAD 294 (349)
T ss_pred HHHHHHHHHHHCCCC----HHHHHHHHHHHHCCCCCEEEECCC-CCHHHH-HHHHHHHHH
T ss_conf 578887777414886----689999986421247736884677-788899-999996211
No 362
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=32.06 E-value=34 Score=14.28 Aligned_cols=178 Identities=17% Similarity=0.164 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCCCEEEECCCCCHH----HHHHHHCCCC
Q ss_conf 068579999999999649838997303688874428999998876213---688324102569999----9998741576
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS---LGLETCMTLGMLSFE----QAQILSKAGL 159 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~---~~~~i~~~~g~~~~~----~~~~Lk~aG~ 159 (328)
..+.+.+.+.++...+.|+.-+.+.++..+-.....+...++++.+.+ ....+.+.++..+.. ..+..+++|+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~pvi~gv~~~s~~~~~~~a~~a~~~Ga 93 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGA 93 (281)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 94999999999999976999899685452431389999999999999980898509995787889999999999997599
Q ss_pred CEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHH-CCCCCCCEEEECCCCC--HHHHHHHHHHHHHCCCCCCEEECCCE
Q ss_conf 06975134377773205888898999999999998-7985577078668989--99999999999740888860205411
Q gi|254780485|r 160 DYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK-SGIKVCCGGILGLGEM--IDDRIDMLLTLANLSTPPESIPINLL 236 (328)
Q Consensus 160 ~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~-~G~~~~sg~l~G~gEt--~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328)
|.+.+ .+..|.+ .+.++.++-.+...+ .++++ ++|-.... ..=-.+.+.+|.+ .+..+
T Consensus 94 d~i~v----~pP~y~~----~~~~~i~~~~~~i~~~~~~pi---~iYn~P~~~g~~l~~~~l~~L~~---~~nv~----- 154 (281)
T cd00408 94 DGVLV----VPPYYNK----PSQEGIVAHFKAVADASDLPV---ILYNIPGRTGVDLSPETIARLAE---HPNIV----- 154 (281)
T ss_pred CEEEE----CCCCCCC----CCHHHHHHHHHHHHHCCCCCE---EEEECCCCCCCCCCHHHHHHHHC---CCCEE-----
T ss_conf 98998----7997778----999999999999985559977---99727753167768999999848---99989-----
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC
Q ss_conf 204874124456879899999999999968687214231156516568999998099889977
Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328)
Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328)
-.+.+ ..+...+.++ .+..-|+ +.+-+|.+.+ ---.+..|+++.+.|
T Consensus 155 -giK~s------~~d~~~~~~~---~~~~~~~--~~v~~G~d~~----~~~~l~~G~~G~i~~ 201 (281)
T cd00408 155 -GIKDS------SGDLDRLTRL---IALLGPD--FAVLSGDDDL----LLPALALGADGAISG 201 (281)
T ss_pred -EEECC------CCCHHHHHHH---HHHCCCC--CEEECCCHHH----HHHHHHCCCCCEEEC
T ss_conf -99848------8999999999---9975997--0562696688----999987289814402
No 363
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=32.01 E-value=34 Score=14.28 Aligned_cols=111 Identities=12% Similarity=0.077 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHCCCCCC----CEEEECC--CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 99999999998798557----7078668--98999999999999740888860205411204874124456879899999
Q gi|254780485|r 184 DRLQTLENVRKSGIKVC----CGGILGL--GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVR 257 (328)
Q Consensus 184 ~~l~~~~~a~~~G~~~~----sg~l~G~--gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr 257 (328)
+|++ ..|.++-++-+ .||=||+ ....+ ..|||+.. | | .||..+---.-..|....-
T Consensus 109 ~f~~--~dA~~LPF~D~sFD~~TiaFGlRN~~d~~------~aL~E~~R----V----L--KpgG~l~iLEf~~P~~~~~ 170 (242)
T TIGR01934 109 SFIE--ADAEALPFEDNSFDAVTIAFGLRNVTDIQ------KALREMYR----V----L--KPGGRLVILEFSKPANGAF 170 (242)
T ss_pred HHEE--CHHHCCCCCCCCEEEEEEECCCCCCCCHH------HHHHHHHH----C----C--CCCCEEEEECCCCCCCHHH
T ss_conf 2110--00550879986244466402554746867------89877311----0----1--8898799840786764168
Q ss_pred HHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99999996868721423115651656899999809988997786651588898999999998298532
Q gi|254780485|r 258 IISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPD 325 (328)
Q Consensus 258 ~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~ 325 (328)
+=.+.++++-++.+.|.. +.+-..+--.+.-. | +..=++.++..+|++++||+..
T Consensus 171 ~~~~Y~~Y~~~v~P~~G~-~~s~~~~aY~YL~e----S--------i~~FP~~~~l~~~~~~aGF~~~ 225 (242)
T TIGR01934 171 LKKFYKFYLKNVLPSIGG-LISKNKEAYEYLPE----S--------IRAFPSQEELAAMLKEAGFEEV 225 (242)
T ss_pred HHHHHHHHHHCHHHHHHH-HHHCCHHHHHHHHH----H--------HHHCCCHHHHHHHHHHCCCCCE
T ss_conf 899999885000377777-74078866577889----9--------8753898899999997386321
No 364
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=31.99 E-value=34 Score=14.27 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEE-HHHHHCHHHHHHHHHHCCCEEEEC
Q ss_conf 56879899999999999968687214231-156516568999998099889977
Q gi|254780485|r 247 NKKVDPIEHVRIISVARILMPKSRLRLAA-GRAMMSDELQALCFFSGANSIFVG 299 (328)
Q Consensus 247 ~~~~~~~e~lr~iAi~RL~lP~~~i~i~~-~~~~~~~~~~~~~L~~GaN~~~~g 299 (328)
....|..|.+..|..++-.-=.+. +|. |=||-..-...+++-.+|--|-+|
T Consensus 336 NQIGTLTEt~~ai~~A~~~gy~~v--iSHRSGETeD~tIAdLAVa~~agqIKTG 387 (423)
T COG0148 336 NQIGTLTETLEAINLAKDAGYTAV--ISHRSGETEDTTIADLAVATNAGQIKTG 387 (423)
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEE--EECCCCCCCCCHHHHHHHHHCCCEEECC
T ss_conf 002318999999999998798088--7537788664338889998189801137
No 365
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.88 E-value=34 Score=14.26 Aligned_cols=135 Identities=12% Similarity=0.045 Sum_probs=64.6
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCHHHHHHHHHHH----CCCCCCEEEEC----CCCCHHHHHHH-
Q ss_conf 068579999999999649838997303688---8744289999988762----13688324102----56999999987-
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWRE---PKERDLSIIVDMIKGV----KSLGLETCMTL----GMLSFEQAQIL- 154 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~---~~~~~~~~~~e~i~~i----~~~~~~i~~~~----g~~~~~~~~~L- 154 (328)
....|.+.+....+.+.|++.+.++++.-. ......+++.+.++.+ .+.++.+.+.. +..+.+++.++
T Consensus 90 ~~~le~l~kaI~lA~~LGi~~I~l~g~dv~~~~~~~~~~~rf~e~l~~~~~~Ae~~gV~L~iE~~~~~f~~t~~~~~~~i 169 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKDEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWD 169 (284)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf 99999999999999980997899688766668698899999999999999999983998999956765547799999999
Q ss_pred HCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHH-HHHHHCCCCC-------CCE----EEECCCCCHHHHHHHHHHHH
Q ss_conf 41576069751343777732058888989999999-9999879855-------770----78668989999999999997
Q gi|254780485|r 155 SKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTL-ENVRKSGIKV-------CCG----GILGLGEMIDDRIDMLLTLA 222 (328)
Q Consensus 155 k~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~-~~a~~~G~~~-------~sg----~l~G~gEt~eeri~~l~~lr 222 (328)
.+.+-..+.++.|+..- ..-+.+..++++.. ......-++- +.| +.+| +..-|....+..|+
T Consensus 170 ~~v~sp~l~v~~DiGn~----~~~g~d~~~ei~~~~~~I~~vHiKDt~~~~~~~~G~f~~vp~G--~G~vDf~~~~~~L~ 243 (284)
T PRK13210 170 EEIDSPWFTVYPDVGNL----SAWGNDVWSELKLGIDRIAAIHLKDTYAVTETSPGQFRDVPFG--EGCVDFVGIFKTLK 243 (284)
T ss_pred HHCCCCCEEEEECCCCH----HHCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCEEECCCC--CCCCCHHHHHHHHH
T ss_conf 96499836999545516----5417999999998644525887532435567888742005889--87658899999999
Q ss_pred HCCCC
Q ss_conf 40888
Q gi|254780485|r 223 NLSTP 227 (328)
Q Consensus 223 ~l~~~ 227 (328)
+++..
T Consensus 244 ~~gY~ 248 (284)
T PRK13210 244 ELNYR 248 (284)
T ss_pred HHCCC
T ss_conf 81996
No 366
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=31.85 E-value=34 Score=14.26 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=14.6
Q ss_pred HCCCCCCCCHHHHHHHHCCC
Q ss_conf 00234478999999997399
Q gi|254780485|r 12 PTKKPKVWTSKEVFQIYNMP 31 (328)
Q Consensus 12 ~~~~~e~ls~eea~~L~~~~ 31 (328)
+...-|+||..|+..+.+.+
T Consensus 64 ~k~~Ie~LTf~Eiv~iidgq 83 (432)
T COG4109 64 GKKNIERLTFAEIVNIIDGQ 83 (432)
T ss_pred CCHHHHHHHHHHHHHHHCCC
T ss_conf 20256551199998762350
No 367
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=31.41 E-value=35 Score=14.21 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=10.3
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 9999999987985577
Q gi|254780485|r 186 LQTLENVRKSGIKVCC 201 (328)
Q Consensus 186 l~~~~~a~~~G~~~~s 201 (328)
+++++..++.|..+..
T Consensus 135 l~ai~~lr~~G~~V~~ 150 (206)
T PRK13809 135 IETAVALEENGLVVRE 150 (206)
T ss_pred HHHHHHHHHCCCEEEE
T ss_conf 9999999987996999
No 368
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B; InterPro: IPR014140 DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in others. AddA is conserved between the firmicutes and the alphaproteobacteria, while its partner protein (RexB) is not. This entry describes the ATP-dependent nuclease subunit B (AddB/RexB) protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous and functionally equivalent, merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function..
Probab=30.96 E-value=16 Score=16.45 Aligned_cols=18 Identities=28% Similarity=0.167 Sum_probs=7.9
Q ss_pred HHHHHHCCCCCCCEEEEC
Q ss_conf 999998798557707866
Q gi|254780485|r 189 LENVRKSGIKVCCGGILG 206 (328)
Q Consensus 189 ~~~a~~~G~~~~sg~l~G 206 (328)
++-|++.|+.+.--++.+
T Consensus 263 ~~la~~~gi~v~~~~~~~ 280 (1192)
T TIGR02773 263 KELAKELGIEVEEPIFLN 280 (1192)
T ss_pred HHHHHHCCCCCCHHHHHC
T ss_conf 999987498501034421
No 369
>PRK07695 transcriptional regulator TenI; Provisional
Probab=30.77 E-value=36 Score=14.14 Aligned_cols=182 Identities=11% Similarity=0.145 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC---CCEEEECCCCCHHHHHHHHCCCCCEEEE
Q ss_conf 6857999999999964983899730368887442899999887621368---8324102569999999874157606975
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLG---LETCMTLGMLSFEQAQILSKAGLDYYNH 164 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~---~~i~~~~g~~~~~~~~~Lk~aG~~~~~~ 164 (328)
++.|+ ++.++.+.+.|++-+.+ -..+. +...+.+..+.+++.. ..+.++ +...--.+.|+|.+++
T Consensus 12 ~~~~~-~~~v~~al~~Gv~~iQl--R~K~~---s~~e~~~~~~~l~~~~~~~~~lIIN------D~~dlA~~~~adGVHL 79 (202)
T PRK07695 12 MSFEE-LVAVAMQIESEVDYIHI--REREK---SAKELYEGVESLLKKGVPASKLIIN------DRVDIALLLNIHRVQL 79 (202)
T ss_pred CCHHH-HHHHHHHHHCCCCEEEE--CCCCC---CHHHHHHHHHHHHHHCCCCCEEEEE------CCHHHHHHCCCCEEEE
T ss_conf 99789-99999999879999998--89997---9999999999999848999989997------9199998849998921
Q ss_pred ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 1343777732058888989999999999987985577078668-989999999999997408888602054112048741
Q gi|254780485|r 165 NIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 165 ~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
.++..+ ...+++. ++ .+++|. ..+.+|... ....+..+ +.++++.|..--
T Consensus 80 Gq~D~~------------------~~~~R~~-~~---~~~IG~S~h~~~e~~~----a~~~gaDY--i~~Gpif~T~tK- 130 (202)
T PRK07695 80 GYRSFD------------------VKSVREK-FP---YLHVGYSVHSLEEAIQ----AEKNGADY--VVYGHVFPTDCK- 130 (202)
T ss_pred CHHHCC------------------HHHHHHH-CC---CCEEEEECCCHHHHHH----HHHCCCCE--EEECCCCCCCCC-
T ss_conf 821219------------------9999987-79---9899995799999999----97769996--997254126888-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCC--CHHHHHHHHHH
Q ss_conf 24456879899999999999968687214231156516568999998099889977866515888--98999999998
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNP--SYNKDTILFNR 319 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~--~~~~~~~~i~~ 319 (328)
.+.++. ..+.++-++- ++-+| .+.|. .+..+.....+.+||+++-+-..+..+..+ ...+.++.|++
T Consensus 131 -~~~~~~-G~~~l~~~~~-~~~iP--vvAIG----GI~~~ni~~v~~~Ga~giAvis~I~~a~dp~~~~~~l~~~i~~ 199 (202)
T PRK07695 131 -KGVPAR-GLEELSEIAR-ALSIP--VIAIG----GITPENTRDVLAAGVSGIAVMSGIFSSSNPYSKAKRYKESIRK 199 (202)
T ss_pred -CCCCCC-CHHHHHHHHH-HCCCC--EEEEC----CCCHHHHHHHHHCCCCEEEEHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf -898878-9999999998-67999--89986----9899999999982999999718977699999999999999998
No 370
>TIGR01236 D1pyr5carbox1 1-pyrroline-5-carboxylate dehydrogenase; InterPro: IPR005931 The delta(1)-pyrroline-5-carboxylate synthetase (1.5.1.12 from EC) a mitochondrial inner membrane, ATP- and NADPH-dependent, bifunctional enzyme, catalyzes the reduction of glutamate to delta1-pyrroline-5-carboxylate, a critical step in the de novo biosynthesis of proline and ornithine. It is the rate-limiting enzyme in proline biosynthesis and is subject to feedback inhibition by proline. 1-pyrroline-5-carboxylate + NAD+ + H2O = L-glutamate + NADH This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase.; GO: 0003842 1-pyrroline-5-carboxylate dehydrogenase activity, 0006561 proline biosynthetic process, 0005759 mitochondrial matrix.
Probab=30.64 E-value=26 Score=15.04 Aligned_cols=186 Identities=16% Similarity=0.116 Sum_probs=83.0
Q ss_pred HHCCCCCCEEEECCCCCHHHHHHHHCC-------CCCEEEEECCCCHHHHHCCCCCCCHHH----HHHHHHHHHHCCCCC
Q ss_conf 621368832410256999999987415-------760697513437777320588889899----999999999879855
Q gi|254780485|r 131 GVKSLGLETCMTLGMLSFEQAQILSKA-------GLDYYNHNIDTSERFYPHVTTTHTFED----RLQTLENVRKSGIKV 199 (328)
Q Consensus 131 ~i~~~~~~i~~~~g~~~~~~~~~Lk~a-------G~~~~~~~let~~~~~~~~~~~~~~~~----~l~~~~~a~~~G~~~ 199 (328)
.|.+.-|...-..|..+.-+|+-|-.= ....+.-||=|+|.|--...-++.... =.-+|+.+.++|+|-
T Consensus 151 ~l~~QQP~s~s~pG~~N~~~YRPLEGFV~Ai~PFNFTaIagNL~gAPALmGNtV~WKPS~Ta~LsnYl~m~iL~EAGLPp 230 (551)
T TIGR01236 151 ELYEQQPISESAPGEWNRTEYRPLEGFVYAISPFNFTAIAGNLAGAPALMGNTVVWKPSQTAVLSNYLVMRILEEAGLPP 230 (551)
T ss_pred HHHCCCCEEEECCCCEEEEEEECCCCEEEEECCCCHHHHHHHHCCCCHHHCCEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98715985883789542057627862276428853677622100464022786686675589999999999999717988
Q ss_pred CCE-EEECCCCCHHHHHHHHHHHH--------------------HCCC-CCCEEECCCEEECCCCCCCC--CCCCC----
Q ss_conf 770-78668989999999999997--------------------4088-88602054112048741244--56879----
Q gi|254780485|r 200 CCG-GILGLGEMIDDRIDMLLTLA--------------------NLST-PPESIPINLLIPIPGSKFEE--NKKVD---- 251 (328)
Q Consensus 200 ~sg-~l~G~gEt~eeri~~l~~lr--------------------~l~~-~~~~v~~~~~~p~~gt~l~~--~~~~~---- 251 (328)
+.= ++=|=|-...|.+---.+|. .|+. .++.+| ++.=.-|..-=. ++..+
T Consensus 231 GVINFVP~dg~~~~d~Vlad~~lag~~FTGS~~tF~~Lwk~v~~nl~~GkYh~fP--Ri~GETGGKdF~~VHpSAd~~~~ 308 (551)
T TIGR01236 231 GVINFVPGDGVKVSDVVLADPDLAGIHFTGSTSTFKHLWKKVASNLDRGKYHNFP--RIVGETGGKDFHLVHPSADVEHV 308 (551)
T ss_pred CCEEEECCCCCCCCCEEECCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCC--CEEEECCCCCCEEECCCCCHHHH
T ss_conf 8167434889501425614601102031377147888866662234357534787--02321489773787489885352
Q ss_pred -------HHHH--HHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHH--HHHHCC-C---EEEECCEEECCCC-----CCHH
Q ss_conf -------8999--99999999968687214231156516568999--998099-8---8997786651588-----8989
Q gi|254780485|r 252 -------PIEH--VRIISVARILMPKSRLRLAAGRAMMSDELQAL--CFFSGA-N---SIFVGDTLLTAKN-----PSYN 311 (328)
Q Consensus 252 -------~~e~--lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~--~L~~Ga-N---~~~~g~~~~t~~g-----~~~~ 311 (328)
.-|| =|+=|+|||++|... |+.+..++-.. -++.|= | |-+.++.+.+=-| .+..
T Consensus 309 v~~TiRGAFEyQGQKCSA~SRLy~P~S~------W~~~~~~l~~~~~~~kvG~~ntsasPis~~Df~~FmgAvIde~sF~ 382 (551)
T TIGR01236 309 VVATIRGAFEYQGQKCSAASRLYVPHSL------WPRFKEELLAELKKVKVGDPNTSASPISADDFSSFMGAVIDEKSFA 382 (551)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 3111001221267216888774443120------1889999998774142136766546533333345566412577888
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 9999999829853
Q gi|254780485|r 312 KDTILFNRLGLIP 324 (328)
Q Consensus 312 ~~~~~i~~~G~~P 324 (328)
..++.|+.|--.|
T Consensus 383 K~vk~IE~AK~~p 395 (551)
T TIGR01236 383 KIVKYIERAKKDP 395 (551)
T ss_pred HHHHHHHHHHCCC
T ss_conf 8999998741581
No 371
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=30.27 E-value=36 Score=14.09 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=22.9
Q ss_pred EEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 4231156516568999998099889977866515888989999999
Q gi|254780485|r 272 RLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILF 317 (328)
Q Consensus 272 ~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i 317 (328)
.+.+.-+.+-..++++ ..+|+|.++.+.. -|...++.++++
T Consensus 279 ~i~Gtpe~v~~~i~~~-~~~Gvd~i~~~~~----~g~~~~~~ielf 319 (325)
T TIGR03555 279 SIAGTPDDVIEKIEEL-LKAGVTQVVAGSP----IGPDKEKAIKLI 319 (325)
T ss_pred EEECCHHHHHHHHHHH-HHCCCCEEEEECC----CCCCHHHHHHHH
T ss_conf 6889999999999999-9749987998288----897989999999
No 372
>PRK06739 pyruvate kinase; Validated
Probab=30.22 E-value=36 Score=14.08 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=69.3
Q ss_pred CCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998741576069751343777732058888989999999999987985577078668989999999999997408
Q gi|254780485|r 146 LSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 146 ~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~ 225 (328)
-+.+.++-..+.|+|.+.+.+= .+.++-.++-+...+.|... -.++--.|+.+- ++++..+-+.-
T Consensus 166 kD~~dI~~a~~~~vD~valSFV------------rsa~DI~~lr~~l~~~~~~~--~~IIaKIE~~~a-l~NldeIi~~s 230 (352)
T PRK06739 166 KDKKDIQFLLEEDVDFIACSFV------------RKPSHIKEIRDFIQQYKETS--PNLIAKIETMEA-IENFQDICKEA 230 (352)
T ss_pred CCHHHHHHHHHCCCCEEEECCC------------CCHHHHHHHHHHHHHHCCCC--CCEEEEECCHHH-HHHHHHHHHHC
T ss_conf 2699999998759999998577------------99999999999999726888--627998649989-97699999855
Q ss_pred CCCCEEECCCEEECCCCCCCCCCCC--CHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCH-------HHHH--HHHHHCCC
Q ss_conf 8886020541120487412445687--98999999999999686872142311565165-------6899--99980998
Q gi|254780485|r 226 TPPESIPINLLIPIPGSKFEENKKV--DPIEHVRIISVARILMPKSRLRLAAGRAMMSD-------ELQA--LCFFSGAN 294 (328)
Q Consensus 226 ~~~~~v~~~~~~p~~gt~l~~~~~~--~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~-------~~~~--~~L~~GaN 294 (328)
++| ++-..+ |.-.-+. =|.-.-+++..+|.+---+.+.-| -.++|-. +.-. .++.-||+
T Consensus 231 ---DgI----MIARGD--Lgvei~~e~vp~~Qk~Ii~~c~~~gkpvivATq-mLeSM~~~p~PTRAEv~DVanav~dG~D 300 (352)
T PRK06739 231 ---DGI----MIARGD--LGVELPYQFIPLLQKMMIQECNRTNTYVITATQ-MLQSMVDHSIPTRAEVTDVFQAVLDGTN 300 (352)
T ss_pred ---CEE----EEECCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC-CHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf ---946----996586--446369889899999999999982997899636-2887634998876999999999984798
Q ss_pred EEEECCEEECCCCCCHHHHHHHHH
Q ss_conf 899778665158889899999999
Q gi|254780485|r 295 SIFVGDTLLTAKNPSYNKDTILFN 318 (328)
Q Consensus 295 ~~~~g~~~~t~~g~~~~~~~~~i~ 318 (328)
++|..+- |+-|.-+-+-+++++
T Consensus 301 ~vmLs~E--TA~G~yPv~~V~~m~ 322 (352)
T PRK06739 301 AVMLSAE--SASGEHPVESVSTLR 322 (352)
T ss_pred EEEECCH--HCCCCCHHHHHHHHH
T ss_conf 8997220--117979999999999
No 373
>TIGR00789 flhB_rel FlhB domain protein; InterPro: IPR004683 This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set..
Probab=29.58 E-value=37 Score=14.01 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=23.3
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9999999987985577078668989999999999997
Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLA 222 (328)
Q Consensus 186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr 222 (328)
-++++.|++.|++. +..++.++.|.+++
T Consensus 30 ~~II~~AK~~gipi---------~ed~~L~~~L~~l~ 57 (84)
T TIGR00789 30 EKIIELAKKHGIPI---------KEDEDLVDVLLKLD 57 (84)
T ss_pred HHHHHHHHHCCCCC---------CCCHHHHHHHHHCC
T ss_conf 89999997638997---------65828999874405
No 374
>TIGR03557 F420_G6P_family F420-dependent oxidoreductase, G6PDH family. Members of this protein family include F420-dependent glucose-6-phosphate dehydrogenases (TIGR03554) and related proteins. All members of this family come from species that synthesize coenzyme F420.
Probab=29.45 E-value=37 Score=13.99 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=16.5
Q ss_pred HHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 516568999998099889977866515888989999999
Q gi|254780485|r 279 MMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILF 317 (328)
Q Consensus 279 ~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i 317 (328)
.+-..++.+ ..+|+|.++. ...|...++.++++
T Consensus 274 ~v~~~i~~~-~daGvd~i~l-----~~~g~d~~~~le~f 306 (316)
T TIGR03557 274 RHVEAVREY-VDAGFDEVAL-----VQIGPDQDGFFDFY 306 (316)
T ss_pred HHHHHHHHH-HHCCCCEEEE-----ECCCCCHHHHHHHH
T ss_conf 999999999-9779988999-----72899989999999
No 375
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=28.96 E-value=38 Score=13.94 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=28.1
Q ss_pred HHHCHHHHHHHHHHCCCEEEECCEEECCCCC--CHHHHHHHHHHCCCC
Q ss_conf 6516568999998099889977866515888--989999999982985
Q gi|254780485|r 278 AMMSDELQALCFFSGANSIFVGDTLLTAKNP--SYNKDTILFNRLGLI 323 (328)
Q Consensus 278 ~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~--~~~~~~~~i~~~G~~ 323 (328)
..+.++.-+.+..+||||.+.|--+ =+++. ..+.-++++|..|+.
T Consensus 242 ~klF~~tv~fA~eaGAsGvL~GRAt-Wa~~v~~g~d~~re~Lrt~g~~ 288 (306)
T COG3684 242 AKLFQRTVRFAMEAGASGVLAGRAT-WAGVVEQGEDAAREWLRTVGFP 288 (306)
T ss_pred HHHHHHHHHHHHHCCCCEEEECHHH-HHCCCCCCCHHHHHHHHHHCCC
T ss_conf 7775899999997388606743234-4122003957899999861532
No 376
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=28.86 E-value=38 Score=13.93 Aligned_cols=72 Identities=17% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHHHCCC--CCC-EEECC-CEEECCCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHH-HHH
Q ss_conf 9999974088--886-02054-112048741244568798--9999999999996868721423115651656899-999
Q gi|254780485|r 217 MLLTLANLST--PPE-SIPIN-LLIPIPGSKFEENKKVDP--IEHVRIISVARILMPKSRLRLAAGRAMMSDELQA-LCF 289 (328)
Q Consensus 217 ~l~~lr~l~~--~~~-~v~~~-~~~p~~gt~l~~~~~~~~--~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~-~~L 289 (328)
.+..+|.++. .++ .+.+. -++|..++.-+.-..|+- ...||-+ =+.||.. +.=+-..+..+..+ .++
T Consensus 152 FlEAiRQl~~e~g~~n~~fiHvtlvP~l~~~gE~KTKPTQhSVk~Lr~~----GI~PDii--vcRse~~l~~~~k~KIa~ 225 (255)
T cd03113 152 FLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSI----GIQPDIL--VCRSEKPLPPEIREKIAL 225 (255)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHC----CCCCCEE--EEECCCCCCHHHHHHHHH
T ss_conf 9999999986439875799987630022787643466428999999975----8998879--980578699789999998
Q ss_pred HHCCC
Q ss_conf 80998
Q gi|254780485|r 290 FSGAN 294 (328)
Q Consensus 290 ~~GaN 294 (328)
.+..+
T Consensus 226 fc~V~ 230 (255)
T cd03113 226 FCDVP 230 (255)
T ss_pred HCCCC
T ss_conf 54998
No 377
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.86 E-value=38 Score=13.93 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=65.8
Q ss_pred HHHHHCCCCCEEEEECC-CC--HHHHHC---CCC---CCCHHHHH----HHHHHHHH-----------CCCCCCCEEEEC
Q ss_conf 99874157606975134-37--777320---588---88989999----99999998-----------798557707866
Q gi|254780485|r 151 AQILSKAGLDYYNHNID-TS--ERFYPH---VTT---THTFEDRL----QTLENVRK-----------SGIKVCCGGILG 206 (328)
Q Consensus 151 ~~~Lk~aG~~~~~~~le-t~--~~~~~~---~~~---~~~~~~~l----~~~~~a~~-----------~G~~~~sg~l~G 206 (328)
.++.++||.|.+.+.-- .. ..+... .++ +.|.+.|. |+++..++ +|++.+..-...
T Consensus 150 A~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~vg~~~~~df~vgvRis~~e~~~ 229 (353)
T cd04735 150 TRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEE 229 (353)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCC
T ss_conf 99999839998997546575999853998899847367988999889999999999985400589733675158654147
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHH
Q ss_conf 89899999999999974088886020541120487412445687989999999999996868721423115651656899
Q gi|254780485|r 207 LGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQA 286 (328)
Q Consensus 207 ~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~ 286 (328)
-|-|.+|-++.+..|.+.+...-.|+...+. ...+..... ...... ++.+-.- ...+-|.+|+.+ .++..+
T Consensus 230 ~G~~~~e~~~~~~~l~~~gvD~l~vs~g~~~--~~~~~~~~~---~~~~~~--~~~~~~~-~~iPvi~~G~i~-~~~~ae 300 (353)
T cd04735 230 PGIRMEDTLALVDKLADKGLDYLHISLWDFD--RKSRRGRDD---NQTIME--LVKERIA-GRLPLIAVGSIN-TPDDAL 300 (353)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCC---CHHHHH--HHHHHHC-CCCCEEEECCCC-CHHHHH
T ss_conf 9999999999999998479988996037766--777667775---355899--9999967-898099989999-899999
Q ss_pred HHHHHCCCEEEEC
Q ss_conf 9998099889977
Q gi|254780485|r 287 LCFFSGANSIFVG 299 (328)
Q Consensus 287 ~~L~~GaN~~~~g 299 (328)
.+|..|||-+.+|
T Consensus 301 ~~l~~gaD~V~~g 313 (353)
T cd04735 301 EALETGADLVAIG 313 (353)
T ss_pred HHHHCCCCHHHHH
T ss_conf 9998699829986
No 378
>TIGR01703 hybrid_clust hydroxylamine reductase; InterPro: IPR010048 Hybrid cluster proteins (HCP, or Prismane) have been identified in bacteria, archaea and eukaryotic protozoa. No specific function has yet been assigned to these proteins, but it may involve oxidoreductase enzymatic activity. These proteins contain one 4Fe-4S cluster, and one hybrid 4Fe-2O-2S cluster, the latter being similar to the Ni-Fe-S cluster found in carbon monoxide dehydrogenase enzymes (IPR010047 from INTERPRO) , . This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N terminus of the protein. Members have been described as monomeric. ; GO: 0016661 oxidoreductase activity acting on other nitrogenous compounds as donors, 0051536 iron-sulfur cluster binding, 0006118 electron transport, 0005737 cytoplasm.
Probab=28.71 E-value=36 Score=14.14 Aligned_cols=53 Identities=23% Similarity=0.292 Sum_probs=20.8
Q ss_pred ECCCCCHHHHHHHHCCCCCEEEEECCCC-----HHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0256999999987415760697513437-----7773205888898999999999998
Q gi|254780485|r 142 TLGMLSFEQAQILSKAGLDYYNHNIDTS-----ERFYPHVTTTHTFEDRLQTLENVRK 194 (328)
Q Consensus 142 ~~g~~~~~~~~~Lk~aG~~~~~~~let~-----~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328)
.+|-+.-+.++-|.+|..++|..=.=|. ..--..+.++|++.+--+.++-.+.
T Consensus 211 E~Gk~~l~~M~LLDkAnT~tyG~PepT~V~ig~~~g~aILvsGHDL~DL~~LL~QT~g 268 (567)
T TIGR01703 211 EVGKMNLEAMKLLDKANTDTYGEPEPTEVNIGTLEGKAILVSGHDLKDLEELLEQTEG 268 (567)
T ss_pred CCCEECHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 0370002476564235242478952105515346687468756888999999998741
No 379
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=28.54 E-value=39 Score=13.89 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=12.4
Q ss_pred HHHHHHHHCCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 99999998798557707866898999999999
Q gi|254780485|r 187 QTLENVRKSGIKVCCGGILGLGEMIDDRIDML 218 (328)
Q Consensus 187 ~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l 218 (328)
+..+.++++|+.- +||.|-..+|.++++
T Consensus 99 ~~~~~l~~~Gv~~----vF~pGt~~~e~i~~~ 126 (128)
T cd02072 99 DVEKRFKEMGFDR----VFAPGTPPEEAIADL 126 (128)
T ss_pred HHHHHHHHCCCCE----EECCCCCHHHHHHHH
T ss_conf 9999999669685----749987999999998
No 380
>PRK13121 consensus
Probab=28.41 E-value=39 Score=13.88 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=99.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-----------------CHHHHHHHHHHHCCCCC---CEEEE---C-C
Q ss_conf 85799999999996498389973036888744-----------------28999998876213688---32410---2-5
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKER-----------------DLSIIVDMIKGVKSLGL---ETCMT---L-G 144 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~-----------------~~~~~~e~i~~i~~~~~---~i~~~---~-g 144 (328)
+.|.-++.++.+.+.|+.-+-++. ...++.- .++.++++++.+++... .+.++ + .
T Consensus 29 ~~~~s~~~~~~l~~~GaDiiElGi-PfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~PivlM~Y~N~i~ 107 (265)
T PRK13121 29 DPAKTVELMHALVEGGADVIELGV-PFSDPMADGPVIQRASERALAHGVSLRQVLAMVKEFRETNQTTPVVLMGYANPIE 107 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC-CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHH
T ss_conf 989999999999976999999789-8899776589999999999977998467799999831037999989862145999
Q ss_pred -CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf -6999999987415760697513437777320588889899999999999879855770786689899999999999974
Q gi|254780485|r 145 -MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLAN 223 (328)
Q Consensus 145 -~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~ 223 (328)
.-.+.-+++++++|++.+.+ |.-.+++--+..+.+++.|+..- .++- .-|.++|+..+....+
T Consensus 108 ~yG~e~F~~~~~~aGvdGlIi-------------pDLP~eE~~~~~~~~~~~gl~~I--~lva-Ptt~~~Ri~~i~~~~~ 171 (265)
T PRK13121 108 RMGYDAFAAAARAAGVDGVLV-------------VDYPPEECEEFAAKMRAAGIDPI--FLLA-PTSTDERIAAVARVAS 171 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHCCCCEE--EEEC-CCCCHHHHHHHHHHCC
T ss_conf 971999999998729873434-------------89998999999999986599668--9958-9998999999996289
Q ss_pred CCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 08888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 224 LSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 224 l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
.++ ..+...|+.-.. .....+....+.-.|=.- .+++..|-.--.++ +-..+..+|+++++|..++
T Consensus 172 -----gFi---Y~Vs~~GvTG~~--~~~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e-~~~~v~~~ADGvIVGSaiV 237 (265)
T PRK13121 172 -----GYV---YYVSLKGVTGAA--TLDVSSVAAKLPAIRSHV---PLPVGVGFGIRDAA-TARAVAEVADAVVIGSRLV 237 (265)
T ss_pred -----CEE---EEEECCCCCCCC--CCCHHHHHHHHHHHHHCC---CCCEEEECCCCCHH-HHHHHHHCCCEEEECHHHH
T ss_conf -----809---997555566777--566288999999998547---99859976889899-9999981199999848999
No 381
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=28.30 E-value=39 Score=13.86 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCCCCCEEE--ECCCCCHHHHHHHHHHHH
Q ss_conf 9999999987985577078--668989999999999997
Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGI--LGLGEMIDDRIDMLLTLA 222 (328)
Q Consensus 186 l~~~~~a~~~G~~~~sg~l--~G~gEt~eeri~~l~~lr 222 (328)
+..++.+++.|..+-...+ -|..+|.+-.++...++.
T Consensus 137 ~~~~~LvkkYGaaVVvma~DE~GqA~t~eRK~eIakR~y 175 (842)
T COG1410 137 EKVAELVKKYGAAVVVMTIDEEGQARTAERKFEIAKRAY 175 (842)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 999999998297379996365433210888999999999
No 382
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.26 E-value=39 Score=13.86 Aligned_cols=73 Identities=11% Similarity=0.126 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHC----CCCCCEEEECC---CCCHHHHHHHHCCCC
Q ss_conf 6857999999999964983899730368887-442899999887621----36883241025---699999998741576
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPK-ERDLSIIVDMIKGVK----SLGLETCMTLG---MLSFEQAQILSKAGL 159 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~~~~~~~e~i~~i~----~~~~~i~~~~g---~~~~~~~~~Lk~aG~ 159 (328)
.|.|+-+..++++.++|++.+.-......+. ....+.+.+....++ +..+.+.+-.| ..+.+.+..+.+--+
T Consensus 17 ~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQEIrIt~~vl~~l~~g~I 96 (254)
T COG4464 17 KSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQEIRITGDVLDDLDKGII 96 (254)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEECHHHHHHHHCCCC
T ss_conf 75899999999999757607951333247766891999999999999888862678266168668975088878762843
Q ss_pred C
Q ss_conf 0
Q gi|254780485|r 160 D 160 (328)
Q Consensus 160 ~ 160 (328)
.
T Consensus 97 ~ 97 (254)
T COG4464 97 L 97 (254)
T ss_pred C
T ss_conf 4
No 383
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=28.15 E-value=39 Score=13.85 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=34.1
Q ss_pred CHHHHHHHHCCCCCEEEEECCCC-----HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 99999987415760697513437-----7773205888898999999999998798557707866898999999999999
Q gi|254780485|r 147 SFEQAQILSKAGLDYYNHNIDTS-----ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTL 221 (328)
Q Consensus 147 ~~~~~~~Lk~aG~~~~~~~let~-----~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~l 221 (328)
..+.++...++|++.+.+. |++ ++.|.+.. ...-.++++.+++.|..- -+++-.|.+. ..+..+
T Consensus 181 ~~~~~~~qi~aGad~i~i~-Ds~~~~ls~~~~~ef~----~p~~~~i~~~ik~~~~~~--~ilh~cG~~~----~~~~~l 249 (337)
T pfam01208 181 VIEYLKAQIEAGADAIQIF-DSWAGLLSPEDFREFV----LPYLKRIVDEVKARGPGP--VILHICGNGT----PILEDM 249 (337)
T ss_pred HHHHHHHHHHHCCCEEEEE-CCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHCCCC--EEEEECCCHH----HHHHHH
T ss_conf 9999999998299679983-4788878989999998----999999999999868997--4998579668----999999
Q ss_pred HHCCC
Q ss_conf 74088
Q gi|254780485|r 222 ANLST 226 (328)
Q Consensus 222 r~l~~ 226 (328)
.+.+.
T Consensus 250 ~~~~~ 254 (337)
T pfam01208 250 AETGA 254 (337)
T ss_pred HHCCC
T ss_conf 86498
No 384
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=27.92 E-value=36 Score=14.07 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=44.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCC
Q ss_conf 56410006857999999999964983899730368887-44289999988762136883241025699999998741576
Q gi|254780485|r 81 KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPK-ERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGL 159 (328)
Q Consensus 81 ~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~ 159 (328)
+++.. ..+.++-.+.-+.+.+.--+=|.+=+-+++.. .-|++.+.++-++... ++.+.+=.-..+--.|-+=-+.|+
T Consensus 121 GIevr-Fvd~dd~pe~~~k~id~nTKAvf~EtIgNP~~~v~Die~~a~~Ah~~Ph-gvPliVDNT~atpGYL~rPi~hGA 198 (434)
T TIGR01326 121 GIEVR-FVDGDDDPEELEKAIDENTKAVFAETIGNPALNVPDIEAVAEVAHAHPH-GVPLIVDNTFATPGYLCRPIDHGA 198 (434)
T ss_pred CEEEE-EECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCHHHCCC
T ss_conf 81488-7278888789997606675189840123877676785899999986789-834887478687641006456498
Q ss_pred CEEEEE
Q ss_conf 069751
Q gi|254780485|r 160 DYYNHN 165 (328)
Q Consensus 160 ~~~~~~ 165 (328)
|-+.+.
T Consensus 199 DIVvhS 204 (434)
T TIGR01326 199 DIVVHS 204 (434)
T ss_pred CEEEEE
T ss_conf 679961
No 385
>pfam01301 Glyco_hydro_35 Glycosyl hydrolases family 35.
Probab=27.88 E-value=40 Score=13.82 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECC--CCCCCCC--CH---HHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 068579999999999649838997303--6888744--28---99999887621368832410256
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAA--WREPKER--DL---SIIVDMIKGVKSLGLETCMTLGM 145 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~--~~~~~~~--~~---~~~~e~i~~i~~~~~~i~~~~g~ 145 (328)
....+.=.+..+.++..|+..+..-.- .+++... ++ ..+..-++..++.++.+.+-+|+
T Consensus 20 R~p~~~W~drL~K~KA~GlN~V~tYv~Wn~HE~~~G~~dF~G~~Dl~~Fl~la~~~GL~VilRpGP 85 (317)
T pfam01301 20 RIPPEMWPDRLQKAKALGLNTIETYVFWNLHEPEPGQYDFSGILDLVKFIKLAQEAGLYVILRPGP 85 (317)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 699899999999999739978998557634589788401235678999999999869879952688
No 386
>TIGR00247 TIGR00247 conserved hypothetical protein TIGR00247; InterPro: IPR003770 This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate, a precursor of folic acid in bacteria . .
Probab=27.78 E-value=28 Score=14.87 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=20.9
Q ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 79855770786689899999999999974088
Q gi|254780485|r 195 SGIKVCCGGILGLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 195 ~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~ 226 (328)
+-++|++|++||+||...-.+.--....||+.
T Consensus 266 M~LQtDpTv~Y~~ge~~~r~~~k~iyfsDLEi 297 (373)
T TIGR00247 266 MKLQTDPTVIYGMGEEYNRSLSKRIYFSDLEI 297 (373)
T ss_pred CCCCCCCEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf 88888610233031115881002566421576
No 387
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase; InterPro: IPR011790 Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases found in archaea. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases .; GO: 0008443 phosphofructokinase activity, 0006000 fructose metabolic process, 0006096 glycolysis, 0005737 cytoplasm.
Probab=27.74 E-value=24 Score=15.28 Aligned_cols=204 Identities=18% Similarity=0.118 Sum_probs=96.1
Q ss_pred CCCCEEEEEEEEEEC--CCC-CCCCCCCCCCCC------CCCCCCCCCCCCCHHHHHHH-------HHHHHHCCCEEEEE
Q ss_conf 289856999864530--786-834232124335------47775641000685799999-------99999649838997
Q gi|254780485|r 47 FEPNHIQLSKLLNIK--TGG-CPENCGYCNQSV------HNKSKLKASKLINVDQVLKE-------AKNAKENGATRYCM 110 (328)
Q Consensus 47 ~~g~~V~~~~~in~~--TN~-C~~~C~fCaf~~------~~~~~~~~~~~~~~Eei~~~-------a~~~~~~G~~~~~l 110 (328)
..|+.+-+|++.+|. +++ |..+----.++. +++.. .+.-..+++.+. +.-|--.|.+-+-.
T Consensus 149 r~Gdp~KvNrIfEf~kg~~fkl~ge~i~vp~s~RfIvssRpe~~---~Ri~~~~~~r~fLp~iGe~VDgA~LSGYQ~I~~ 225 (466)
T TIGR02045 149 REGDPIKVNRIFEFRKGLKFKLGGEEIKVPRSGRFIVSSRPESI---LRIETKDDLRKFLPEIGEAVDGAILSGYQGIKE 225 (466)
T ss_pred CCCCCEEEEEEEEEECCCEEEECCCEEEECCCCCEEEEECCCHH---EEEECCHHHHHHHHHHCCHHCHHHHHHHHHHCC
T ss_conf 48888045144554168437764847881267615886450100---001024237774164141002123200333002
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHCCC--CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHH-CCCCCCCHHHHHH
Q ss_conf 3036888744289999988762136--883241025699999998741576069751343777732-0588889899999
Q gi|254780485|r 111 GAAWREPKERDLSIIVDMIKGVKSL--GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYP-HVTTTHTFEDRLQ 187 (328)
Q Consensus 111 ~~~~~~~~~~~~~~~~e~i~~i~~~--~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~-~~~~~~~~~~~l~ 187 (328)
.-..+.....+++.-.+-|+.+|.. ++.+|+..-......++ ++=++.+ ++ .+.. -.-|-.|
T Consensus 226 ~Y~DGk~a~yY~~~a~edI~lLK~~nk~lk~H~EfaSIq~r~iR---K~v~~~i----------~~r~v~S--vGmDe~E 290 (466)
T TIGR02045 226 EYSDGKTAKYYLERAKEDIKLLKKNNKDLKIHVEFASIQNREIR---KKVVTNI----------LPRLVDS--VGMDEAE 290 (466)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH---HHHHHHH----------HHHCCCC--CCCCHHH
T ss_conf 25788507899998899999984249972688873130244789---9999887----------5410120--3676799
Q ss_pred HHHHHHHCCCCCCCEEEECCCC-CHHHHHH----HHHHHHHCCC-CCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999998798557707866898-9999999----9999974088-88602054112048741244568798999999999
Q gi|254780485|r 188 TLENVRKSGIKVCCGGILGLGE-MIDDRID----MLLTLANLST-PPESIPINLLIPIPGSKFEENKKVDPIEHVRIISV 261 (328)
Q Consensus 188 ~~~~a~~~G~~~~sg~l~G~gE-t~eeri~----~l~~lr~l~~-~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi 261 (328)
+-..++=+|+.--|--++--|+ ..+|.+. .|..+..|+. +.|++.+-.++-+.++||.....-..-++--++|.
T Consensus 291 iA~~L~vLGy~eLs~~i~~kG~n~Ied~~~Ga~iLld~l~nLe~vqvHtiyy~~~i~~~dnPLs~eEl~~sL~fst~LAa 370 (466)
T TIGR02045 291 IANVLSVLGYDELSDRILKKGENRIEDLILGAKILLDELNNLEVVQVHTIYYILYITHADNPLSEEELRRSLEFSTILAA 370 (466)
T ss_pred HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99998441846788898640451367888879999984155766631356666765417899878999988778999999
Q ss_pred HHHHCCC
Q ss_conf 9996868
Q gi|254780485|r 262 ARILMPK 268 (328)
Q Consensus 262 ~RL~lP~ 268 (328)
+|=-+-|
T Consensus 371 ~~A~lG~ 377 (466)
T TIGR02045 371 TRASLGN 377 (466)
T ss_pred HHHHCCC
T ss_conf 8640378
No 388
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.36 E-value=41 Score=13.76 Aligned_cols=93 Identities=16% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHH-HHHHHHCCCCCC
Q ss_conf 8999998876213688324102569999999874157606975134377773205888898999999-999998798557
Q gi|254780485|r 122 LSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQT-LENVRKSGIKVC 200 (328)
Q Consensus 122 ~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~-~~~a~~~G~~~~ 200 (328)
.+.+.+.++.++..+..+.+.-.-.....+..+....++.+.+ ++.+...+........-++. ...++++|+++
T Consensus 131 ~~~~~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKl----d~~~v~~~~~~~~~~~~l~~l~~~a~~~~i~v- 205 (240)
T cd01948 131 LEEALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKI----DRSFVRDIETDPEDRAIVRAIIALAHSLGLKV- 205 (240)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCHHHHC----CHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEE-
T ss_conf 9999999999986499688616899876689998678015440----89999736468223899999999999849989-
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 70786689899999999999974088
Q gi|254780485|r 201 CGGILGLGEMIDDRIDMLLTLANLST 226 (328)
Q Consensus 201 sg~l~G~gEt~eeri~~l~~lr~l~~ 226 (328)
+.--+|+.+ .+..+++++.
T Consensus 206 ---iaegVE~~~----~~~~l~~lgi 224 (240)
T cd01948 206 ---VAEGVETEE----QLELLRELGC 224 (240)
T ss_pred ---EEEECCHHH----HHHHHHHCCC
T ss_conf ---998185099----9999998599
No 389
>pfam02677 DUF208 Uncharacterized BCR, COG1636.
Probab=27.36 E-value=41 Score=13.76 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=11.7
Q ss_pred HHHHHH-HHHHHHHCCCC-CCCEEEECCCCCH
Q ss_conf 899999-99999987985-5770786689899
Q gi|254780485|r 182 FEDRLQ-TLENVRKSGIK-VCCGGILGLGEMI 211 (328)
Q Consensus 182 ~~~~l~-~~~~a~~~G~~-~~sg~l~G~gEt~ 211 (328)
++-||+ +.+.|++.|+. .++|.++-.-...
T Consensus 89 y~~RL~~tA~~A~e~gfd~ftTTL~~Sp~k~~ 120 (176)
T pfam02677 89 YDMRLEETAQYAKEHGFDAFTTTLLISPYKNH 120 (176)
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCH
T ss_conf 99999999999998599999764617776479
No 390
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=27.35 E-value=41 Score=13.76 Aligned_cols=183 Identities=19% Similarity=0.186 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 68579999999999649838997303688874428999998876213-68832410256999999987415760697513
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYNHNI 166 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l 166 (328)
.+.|++.+.|+.+.+.|.--+.++++. +-. -+.+-+.++.||+ ..+.+.+ ++-+-..+.+..||=+-. .-|
T Consensus 10 ~~~~~~~~IAk~~~~aGtD~ilvGGs~-Gi~---e~~ld~~v~~ik~~~~~p~iL--FPG~~~~Ls~~ADAvlFm--SlL 81 (212)
T TIGR01769 10 KSSDELKKIAKNAKEAGTDAILVGGSL-GIS---EDKLDQVVKKIKEITNLPVIL--FPGSVNLLSRKADAVLFM--SLL 81 (212)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-CCC---HHHHHHHHHHHHHCCCCCEEE--CCCCHHHHHHHHHHHHHH--HHH
T ss_conf 584569999999985289889836633-733---547889999864015786688--278845788886598888--865
Q ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHCC--CC--CCCEEEECCCC--CHHHHHHHHHHHHHCC-------------CC
Q ss_conf 437777320588889899999999999879--85--57707866898--9999999999997408-------------88
Q gi|254780485|r 167 DTSERFYPHVTTTHTFEDRLQTLENVRKSG--IK--VCCGGILGLGE--MIDDRIDMLLTLANLS-------------TP 227 (328)
Q Consensus 167 et~~~~~~~~~~~~~~~~~l~~~~~a~~~G--~~--~~sg~l~G~gE--t~eeri~~l~~lr~l~-------------~~ 227 (328)
.+....|---++ +..-....+++ +. .++-+++|+|. |.- |.-..|.+. .+
T Consensus 82 NS~d~yfivGaq-------i~aA~~i~~~~PrlE~Ip~AY~iv~~G~ktavG----~vG~~~~Ip~~~~~~A~~Y~LAA~ 150 (212)
T TIGR01769 82 NSADTYFIVGAQ-------IKAAVLIKKLQPRLEVIPTAYLIVGPGGKTAVG----YVGKARLIPYDKPEIAAAYALAAK 150 (212)
T ss_pred CCCCCCEEECCH-------HHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEE----EEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 369973674151-------578999987278856365226887588740446----520012589986668999999998
Q ss_pred CCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC
Q ss_conf 860205411204874124456879899999999999968687214231156516568999998099889977
Q gi|254780485|r 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328)
Q Consensus 228 ~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328)
+ +.+.+..-..|. +.+.|=..| ||+..|=..|+..+.+.+|== .+|......++|||-|++|
T Consensus 151 Y--~G~~~vYLEAGS---GAs~Pv~~e---~i~~~k~~~~~I~LIVGGGIr--~~EiA~~~v~aGAd~IVTG 212 (212)
T TIGR01769 151 Y--LGFKLVYLEAGS---GASEPVSPE---TISLVKKKISSIPLIVGGGIR--SPEIALKIVLAGADVIVTG 212 (212)
T ss_pred H--HHHHHHHHHCCC---CCCCCCCHH---HHHHHHHHCCCCCEEECCCCC--CHHHHHHHHHHCCCEEECC
T ss_conf 7--413512131057---866678667---999999854897277527758--8899999997089826349
No 391
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.32 E-value=41 Score=13.75 Aligned_cols=186 Identities=18% Similarity=0.245 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CC---------------CHHHHHHHHHHHCCC-CC-CEEEE---C--C
Q ss_conf 6857999999999964983899730368887-44---------------289999988762136-88-32410---2--5
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPK-ER---------------DLSIIVDMIKGVKSL-GL-ETCMT---L--G 144 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~---------------~~~~~~e~i~~i~~~-~~-~i~~~---~--g 144 (328)
-+.|.-.+.++.+.+.|+.-+-++--.-+|. +. .++.+.++++.++.. .. .+.+. + .
T Consensus 20 P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~~~~pivlM~Y~N~i~~ 99 (256)
T PRK13111 20 PDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAKPTIPIVLMTYYNPIFQ 99 (256)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHH
T ss_conf 99899999999999659999997888788766579999999999977996999999999986068998899850308987
Q ss_pred CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 69999999874157606975134377773205888898999999999998798557707866898999999999999740
Q gi|254780485|r 145 MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 145 ~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
.-.+.-+++++++|++.+++ |.-.+++.-+..+.+++.|+..- .++- .-|.++|++.+....+
T Consensus 100 ~G~e~F~~~~~~~GvdGvIi-------------pDLP~eE~~~~~~~~~~~gi~~I--~lva-Ptt~~~Ri~~i~~~s~- 162 (256)
T PRK13111 100 YGVEAFAADAAEAGVDGLII-------------PDLPPEEAEEFRAAAKKHGIDLI--FLVA-PTTTDERLKKIASHAS- 162 (256)
T ss_pred HCHHHHHHHHHHCCCCEEEE-------------CCCCHHHHHHHHHHHHHCCCEEE--EEEC-CCCCHHHHHHHHHHCC-
T ss_conf 09999999999759977981-------------69997888999999997598089--9969-9998899999996269-
Q ss_pred CCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 8888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 225 STPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 225 ~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
.++ ..+...|+.-.. ...+.+....+.-.|=.- .+++..|-.--.++..+ .+..|||++++|..++
T Consensus 163 ----gfi---Y~vs~~GvTG~~--~~~~~~~~~~i~~ik~~t---~~Pi~vGFGIs~~e~v~-~~~~~aDGvIVGSaiv 228 (256)
T PRK13111 163 ----GFV---YYVSRAGVTGAR--SADAADVADLLARLKAHT---DLPVAVGFGISTPEQAA-AIAEGADGVIVGSALV 228 (256)
T ss_pred ----CEE---EEEECCCCCCCC--CCCHHHHHHHHHHHHHCC---CCCEEEECCCCCHHHHH-HHHCCCCEEEECHHHH
T ss_conf ----859---998567767887--666288999999998706---89758852889999999-9974599999868999
No 392
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=27.31 E-value=41 Score=13.75 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCC
Q ss_conf 786834232124
Q gi|254780485|r 62 TGGCPENCGYCN 73 (328)
Q Consensus 62 TN~C~~~C~fCa 73 (328)
+|+=..++..|.
T Consensus 61 ~Gi~~~d~~~~~ 72 (367)
T TIGR00585 61 SGIDKEDLELAC 72 (367)
T ss_pred CCCCHHHHHHHH
T ss_conf 567777799861
No 393
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=27.23 E-value=41 Score=13.74 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=13.6
Q ss_pred HHHHHHHHHCCCCC-CCEEEECCCCCHHH
Q ss_conf 99999999879855-77078668989999
Q gi|254780485|r 186 LQTLENVRKSGIKV-CCGGILGLGEMIDD 213 (328)
Q Consensus 186 l~~~~~a~~~G~~~-~sg~l~G~gEt~ee 213 (328)
+++++..++.|..+ ..-.++--.|.-.|
T Consensus 124 ~eai~~l~~~G~~V~~v~vivDR~eg~~e 152 (174)
T PRK13812 124 VDAVEALRDAGATVNRVLVVVDREEGARE 152 (174)
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCHHH
T ss_conf 99999999879979999999977856589
No 394
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=27.10 E-value=41 Score=13.73 Aligned_cols=55 Identities=22% Similarity=0.195 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-------CHHHHHHHHHHHCCCCCCEE
Q ss_conf 000685799999999996498389973036888744-------28999998876213688324
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER-------DLSIIVDMIKGVKSLGLETC 140 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~-------~~~~~~e~i~~i~~~~~~i~ 140 (328)
-+..+.+.++++++++.+.|++.+.+-... ..+.. +-.-+..+++.+|+.++.+.
T Consensus 53 i~R~Sid~l~~eve~~~~lGI~av~LFpv~-~~Kd~~gseA~n~dglv~rAIr~iK~~fpdl~ 114 (321)
T PRK09283 53 VYRLSIDLLLKEAEEAVDLGIPAVALFGVP-ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELG 114 (321)
T ss_pred CCEECHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 504289999999999998799989973784-34677756135864189999999998689828
No 395
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=27.09 E-value=41 Score=13.72 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCCCEEEECCCCCHHH----HHHHHCCCCC
Q ss_conf 68579999999999649838997303688874428999998876213---6883241025699999----9987415760
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS---LGLETCMTLGMLSFEQ----AQILSKAGLD 160 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~---~~~~i~~~~g~~~~~~----~~~Lk~aG~~ 160 (328)
.+.+.+.+.++...+.|+.-+.+.++..+-.....+...++++...+ ....+.+.++..+-.+ .+.-.++|+|
T Consensus 19 iD~~~l~~~v~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~A~~~Gad 98 (292)
T PRK03170 19 VDFAALRKLVDYQIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 59999999999999779999996832414112899999999999998738971288437876799999999989875999
Q ss_pred EEEE
Q ss_conf 6975
Q gi|254780485|r 161 YYNH 164 (328)
Q Consensus 161 ~~~~ 164 (328)
.+.+
T Consensus 99 av~v 102 (292)
T PRK03170 99 GALV 102 (292)
T ss_pred EEEE
T ss_conf 8996
No 396
>PRK12376 putative translaldolase; Provisional
Probab=27.05 E-value=41 Score=13.72 Aligned_cols=144 Identities=15% Similarity=0.242 Sum_probs=69.5
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCH----HHHHHHHCCCCCEEEEECCCCHHHHHCCCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf 99999887621368832410256999----9999874157606975134377773205888-898999999999998798
Q gi|254780485|r 123 SIIVDMIKGVKSLGLETCMTLGMLSF----EQAQILSKAGLDYYNHNIDTSERFYPHVTTT-HTFEDRLQTLENVRKSGI 197 (328)
Q Consensus 123 ~~~~e~i~~i~~~~~~i~~~~g~~~~----~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~-~~~~~~l~~~~~a~~~G~ 197 (328)
++..++++.+.+.. +++.+..-+. ++.+++.+.|-+ .+-+++-+ -....-+.+++.+.+.|+
T Consensus 49 ~~~~~i~~~i~~~~--is~EV~~~~~~~mi~qA~~l~~~~~n-----------v~VKIP~t~~~G~~~~~~ik~L~~~Gi 115 (238)
T PRK12376 49 AFAKEVLAEIPDYP--ISFEVFADDLETMEKEAEILASLGEN-----------VYVKIPITNTKGESTIPLIKKLSADGI 115 (238)
T ss_pred HHHHHHHHHCCCCC--EEEEEECCCHHHHHHHHHHHHHHCCC-----------EEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999996389987--79999568778899999999975897-----------799977857551899999999988799
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHH-HHHHHHHHHCCCCCCEEEEH
Q ss_conf 55770786689899999999999974088886020541120487412445687989999-99999999686872142311
Q gi|254780485|r 198 KVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHV-RIISVARILMPKSRLRLAAG 276 (328)
Q Consensus 198 ~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~l-r~iAi~RL~lP~~~i~i~~~ 276 (328)
+++.|.+|- ..+...-+..+..-.. ..+++|. | ++.+... ++.+.. .+..+.+-. +++.|-.++-
T Consensus 116 ~vnvTaifs----~~Qa~~a~~A~a~~~a----~yvSpfv---G-Ri~D~G~-Dg~~~i~~~~~i~~~~-~~tkILaASi 181 (238)
T PRK12376 116 KLNVTAIFT----IEQVKEVVDALTPGVP----SIVSVFA---G-RIADTGV-DPLPLMKEALKICHQK-PGVELLWASP 181 (238)
T ss_pred CEEEEEEEC----HHHHHHHHHHCCCCCC----EEEEEEC---C-HHHHCCC-CCHHHHHHHHHHHHCC-CCEEEEEEEC
T ss_conf 668999827----9999999985277788----2775121---3-0865599-8279999999998428-8749999714
Q ss_pred HHHHCHHHHHHHHHHCCCEE
Q ss_conf 56516568999998099889
Q gi|254780485|r 277 RAMMSDELQALCFFSGANSI 296 (328)
Q Consensus 277 ~~~~~~~~~~~~L~~GaN~~ 296 (328)
|.. .--..++.+||+.+
T Consensus 182 R~~---~~v~~a~~~Gadii 198 (238)
T PRK12376 182 REL---YNIIQADQLGCDII 198 (238)
T ss_pred CCH---HHHHHHHHCCCCEE
T ss_conf 888---99999998699999
No 397
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=26.60 E-value=42 Score=13.67 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999998798557707866898999999999999740888860205411204874124456879899999999999
Q gi|254780485|r 184 DRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVAR 263 (328)
Q Consensus 184 ~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~R 263 (328)
+.+++++.+.+.|++++.|.+|-. .+. ....+.+..+ ++ +| -| ++.+...-.....-++..+.+
T Consensus 89 ~gl~ai~~L~~~gi~~n~Tav~s~----~Qa----~~Aa~aga~y--vs--pf---~G-Ri~d~G~d~~~~i~~~~~~~~ 152 (211)
T cd00956 89 DGLKAIKKLSEEGIKTNVTAIFSA----AQA----LLAAKAGATY--VS--PF---VG-RIDDLGGDGMELIREIRTIFD 152 (211)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCH----HHH----HHHHHCCCCE--EE--EE---CC-CHHHCCCCHHHHHHHHHHHHH
T ss_conf 599999999985997677750689----999----9999879978--86--30---34-075458985999999999999
Q ss_pred HHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEE
Q ss_conf 968687214231156516568999998099889
Q gi|254780485|r 264 ILMPKSRLRLAAGRAMMSDELQALCFFSGANSI 296 (328)
Q Consensus 264 L~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~ 296 (328)
-.-.++.|..++-|.. ..-..+..+||+.+
T Consensus 153 ~~~~~tkiL~AS~R~~---~~v~~a~~~G~d~i 182 (211)
T cd00956 153 NYGFDTKILAASIRNP---QHVIEAALAGADAI 182 (211)
T ss_pred HCCCCEEEEEEECCCH---HHHHHHHHCCCCEE
T ss_conf 8299826885204889---99999998699999
No 398
>pfam08902 DUF1848 Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.
Probab=26.56 E-value=23 Score=15.37 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCC-----CCCCCCHHHHHHHHHHHC
Q ss_conf 857999999999964983899730368-----887442899999887621
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWR-----EPKERDLSIIVDMIKGVK 133 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~-----~~~~~~~~~~~e~i~~i~ 133 (328)
.+.-++....++.++|..-....+-.. +|..-+.+..++.++.+.
T Consensus 57 NP~P~l~~L~~l~~~gy~~yfq~Tit~Y~~~lEp~vP~~~~~i~~f~~Ls 106 (264)
T pfam08902 57 NPAPFLPRLDELDARGYPYYFQFTLTPYGRDLEPNVPSKDQRIETFRRLS 106 (264)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 96788732999986698569999857998656789989999999999999
No 399
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component; InterPro: IPR011786 Sulphite reductase (NADPH) catalyzes a six electron reduction of sulphite to sulphide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulphur protein.; GO: 0004783 sulfite reductase (NADPH) activity, 0050661 NADP binding, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process, 0009337 sulfite reductase complex (NADPH).
Probab=26.46 E-value=42 Score=13.65 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=11.5
Q ss_pred HHCCCCCCCE---EEECCCCCHHHHHHHHH
Q ss_conf 9879855770---78668989999999999
Q gi|254780485|r 193 RKSGIKVCCG---GILGLGEMIDDRIDMLL 219 (328)
Q Consensus 193 ~~~G~~~~sg---~l~G~gEt~eeri~~l~ 219 (328)
|+--++.|+. +|-+.-|.....|+.|.
T Consensus 376 H~GdfRiT~NQNlIiA~V~e~~K~~Ie~l~ 405 (550)
T TIGR02041 376 HKGDFRITSNQNLIIANVPEGGKAKIEALA 405 (550)
T ss_pred CCCCEEECCCCCEEEECCCCHHHHHHHHHH
T ss_conf 899753447763788427842368899999
No 400
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=25.95 E-value=43 Score=13.59 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC---CCCCEEEECCCCCH----HHHHHHHCCCC
Q ss_conf 068579999999999649838997303688874428999998876213---68832410256999----99998741576
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS---LGLETCMTLGMLSF----EQAQILSKAGL 159 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~---~~~~i~~~~g~~~~----~~~~~Lk~aG~ 159 (328)
..+.+...+.++...+.|..-++..++..+......+...++++...+ ....+.+.+|..+- +..+..+++|+
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~e~~~gr~pvi~G~~~~~t~~ai~~a~~a~~~Ga 104 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGA 104 (309)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 73799999999999976999899792350043487999999999999983898509960575059999999999984698
Q ss_pred CEEEE
Q ss_conf 06975
Q gi|254780485|r 160 DYYNH 164 (328)
Q Consensus 160 ~~~~~ 164 (328)
|.+.+
T Consensus 105 d~~lv 109 (309)
T cd00952 105 DGTML 109 (309)
T ss_pred CEEEE
T ss_conf 99998
No 401
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.54 E-value=44 Score=13.54 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 99999999996498389973036--888744289999988762136883241025699999998741576069751343-
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAW--REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT- 168 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~--~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let- 168 (328)
+.++.|+... .++.+++++--. ........+.+.+++ ++.++.+.+.-|..+.+.++++.++|++.+.++-.+
T Consensus 31 dP~~~A~~~~-~~a~~lhivDLd~a~~g~~~n~~~I~~i~---~~~~~piqvGGGIrs~e~i~~~l~~Ga~kViigt~a~ 106 (228)
T PRK04128 31 DPVEIALRFS-EYVDKIHVVDLDGAFEGKPKNLDVVKNII---EETGLKVQVGGGFRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CHHHHHHHHH-HCCCEEEEEECCCCCCCCCCHHHHHHHHH---HHCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999999999-66998999988030149832699999998---6549628973860779999999968997698145125
Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC------CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC
Q ss_conf 7777320588889899999999999879855770786689------8999999999999740888860205411204874
Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLG------EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGS 242 (328)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~g------Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt 242 (328)
.+++..+...... . --+++.+-.+-+...| -+.++ .+..+++. ...+-+ .-+-..||
T Consensus 107 ~~~~l~~~~~~~~--~--------ivvslD~k~~~v~~~gw~~~~~~~~~~---~~~~~~~~---~~~ii~-tdI~~dGt 169 (228)
T PRK04128 107 DIEFLEKITSEFN--G--------ITVSLDVKGGRIATKGWLEESSIKVED---AYKMLRNY---VNRFIY-TSIERDGT 169 (228)
T ss_pred CHHHHHHHHHHCC--C--------CCEEEECCCCEEECCCCEECCCCCHHH---HHHHHHHH---CCCEEE-EEECCCCC
T ss_conf 8089999997264--7--------636887137868526848889988999---99999863---845376-31265430
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHH
Q ss_conf 1244568798999999999999686872142311565165689999980998899778665158889899999
Q gi|254780485|r 243 KFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTI 315 (328)
Q Consensus 243 ~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~ 315 (328)
+.+ .+. .+.+.++..+.+++|- +-..++..+ -..|+++.++|--+ -.+--+.+|.++
T Consensus 170 -~~G------~~~------~~~~~~~~~iiasGGv-~s~~Dl~~l-~~~g~~gvivG~Al-~~g~i~l~e~~~ 226 (228)
T PRK04128 170 -LTG------IEN------IERFWGDEEFIYAGGV-SSIEDVKKL-AEIGFSGAIIGKAL-YEGRISLEELLE 226 (228)
T ss_pred -CCC------HHH------HHHHCCCCCEEEECCC-CCHHHHHHH-HHCCCCEEEEEHHH-HCCCCCHHHHHH
T ss_conf -038------899------9986168968987898-999999999-96799899998538-569978999943
No 402
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=25.36 E-value=44 Score=13.52 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 888989999999999987985577078
Q gi|254780485|r 178 TTHTFEDRLQTLENVRKSGIKVCCGGI 204 (328)
Q Consensus 178 ~~~~~~~~l~~~~~a~~~G~~~~sg~l 204 (328)
+..+.++-.+.++.+.+.|+++..+.+
T Consensus 316 ~l~~~e~l~~~v~~a~~~gl~v~vHAi 342 (535)
T COG1574 316 LLLTEEELEELVRAADERGLPVAVHAI 342 (535)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 354999999999999977991799981
No 403
>PRK12999 pyruvate carboxylase; Reviewed
Probab=25.28 E-value=44 Score=13.51 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEECCC---CCHHHHHHHHCCCCCEEEE
Q ss_conf 8579999999999649838997303688874428999998876213-68832410256---9999999874157606975
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-LGLETCMTLGM---LSFEQAQILSKAGLDYYNH 164 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-~~~~i~~~~g~---~~~~~~~~Lk~aG~~~~~~ 164 (328)
+.|.-++.|+++.++|+.-+||--...-..+... .++++.+|+ .++.||.+... +....+.+-.+||+|.+-.
T Consensus 690 ~l~yy~~~a~~l~~~G~~~l~IKDMAGLl~P~aa---~~LV~aLk~~~~lPIhlHtHdTsG~~~at~laA~eAGvDiVD~ 766 (1147)
T PRK12999 690 DLDYYVDLAKELEAAGAHILAIKDMAGLLKPAAA---YKLVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDV 766 (1147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHH---HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf 6999999999999768988997144546887999---9999999861698459843678855899999999859998963
Q ss_pred ECCCCHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCE--EEC---CCEE
Q ss_conf 13437777320588889899999999999-87985577078668-98999999999999740888860--205---4112
Q gi|254780485|r 165 NIDTSERFYPHVTTTHTFEDRLQTLENVR-KSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPES--IPI---NLLI 237 (328)
Q Consensus 165 ~let~~~~~~~~~~~~~~~~~l~~~~~a~-~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~--v~~---~~~~ 237 (328)
.+.+.-.. +.+.. ++++-.|. ..+..+ |+ .+...+.-+.+..+|++....++ ... -.+.
T Consensus 767 A~ssmSg~-----TSQP~---l~slvaaL~gT~rdt------gLdle~L~~is~Ywe~VR~~Y~~FEs~~~~~d~~Vy~h 832 (1147)
T PRK12999 767 AMASMSGL-----TSQPS---LSSLVAALAGTERDT------GLDLEALRDLSPYWEAVRPYYAPFESGLKSPTTEVYLH 832 (1147)
T ss_pred CCHHHCCC-----CCCCC---HHHHHHHHCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 54110289-----88988---999999843789898------98989999999999999999873045566788653772
Q ss_pred ECCCCCCCCCCC----CC----HHHHHHHHHHHHHHCCCCCCEEEEH
Q ss_conf 048741244568----79----8999999999999686872142311
Q gi|254780485|r 238 PIPGSKFEENKK----VD----PIEHVRIISVARILMPKSRLRLAAG 276 (328)
Q Consensus 238 p~~gt~l~~~~~----~~----~~e~lr~iAi~RL~lP~~~i~i~~~ 276 (328)
+.||.-+.+... .. -.|.++.++-.|-+|-+. +.++-+
T Consensus 833 emPGGq~SNL~~Qa~~~Gl~dr~~EV~~~y~~Vn~~lGdi-~kVTPs 878 (1147)
T PRK12999 833 EMPGGQYSNLKQQARSLGLGDRFEEVKEMYADVNRMFGDI-VKVTPS 878 (1147)
T ss_pred ECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC-CEECCH
T ss_conf 1795056569999986781867999999999999976998-635836
No 404
>TIGR01210 TIGR01210 conserved hypothetical protein TIGR01210; InterPro: IPR005909 This family of exclusively archaeal proteins has no characterised close homologs. An apparent similarity between the central region of this family and the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN has been observed..
Probab=25.23 E-value=44 Score=13.50 Aligned_cols=203 Identities=16% Similarity=0.172 Sum_probs=102.0
Q ss_pred CCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HC------CCEEEEEECCCCCCCC---CCH
Q ss_conf 078683-----42321243354777564100068579999999999----64------9838997303688874---428
Q gi|254780485|r 61 KTGGCP-----ENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK----EN------GATRYCMGAAWREPKE---RDL 122 (328)
Q Consensus 61 ~TN~C~-----~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~----~~------G~~~~~l~~~~~~~~~---~~~ 122 (328)
+|..|. ..|..|++....... ...+.|.+........ .. +...+...++.-++.. ..-
T Consensus 22 ~~~gc~~~~~~~~c~~c~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~p~~~~ 97 (329)
T TIGR01210 22 RTRGCYWYRIGGGCYLCGYLADAPPG----GKVTEENLLGQFDYALEKLKGEGGDLKDFVLKIFTSGSFLDDREVPPGTR 97 (329)
T ss_pred ECCCCCHHHHCCCCEEECCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHCCHHHH
T ss_conf 14552001103540000122113454----42148899999999987642013334442200220444235010324788
Q ss_pred HHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCC--C-CEEEEECCCCHHHHHC--CCCCCCHHHHHHHHHHHHHCC
Q ss_conf 999998876213-688324102569999999874157--6-0697513437777320--588889899999999999879
Q gi|254780485|r 123 SIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAG--L-DYYNHNIDTSERFYPH--VTTTHTFEDRLQTLENVRKSG 196 (328)
Q Consensus 123 ~~~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG--~-~~~~~~let~~~~~~~--~~~~~~~~~~l~~~~~a~~~G 196 (328)
.++.+.+..... ..+.+........++.+..++..+ + ..+.+++++....... +-...++++..+....++..|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 177 (329)
T TIGR01210 98 GYLFEKLAERDNLKKLVVESRPEFIDEEKLEELRKVGEGLPLEVGVGLETANDRVRELCINKGFTFEDFVDAAELARNYG 177 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99999876543467776530011103345667877524642000102100024677765421451678999999887527
Q ss_pred CCCCCEEEECC-----CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHH
Q ss_conf 85577078668-----9899999999999974088886020541120487412445------687989999999999996
Q gi|254780485|r 197 IKVCCGGILGL-----GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIISVARIL 265 (328)
Q Consensus 197 ~~~~sg~l~G~-----gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iAi~RL~ 265 (328)
+.+.+-+++-. .+...|....+...+.+.. .+.+.+++..-..+|..+.. .++-......++--..-.
T Consensus 178 ~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~g-c~~~~~~~~~~~~~~~~~~~~~~~~~~pp~lw~~~~~l~~~~~~ 256 (329)
T TIGR01210 178 AGVKAYLLLKPPFLSEKEAIADALSSIRKCKPYTG-CDTVSLNPTNVQKGTLVEKLWKRGLYRPPWLWSVVEVLKEAKKI 256 (329)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 63012111124100204678899988886532035-42122020001034678888752677860578899999887521
Q ss_pred CCC
Q ss_conf 868
Q gi|254780485|r 266 MPK 268 (328)
Q Consensus 266 lP~ 268 (328)
.|.
T Consensus 257 ~p~ 259 (329)
T TIGR01210 257 GPG 259 (329)
T ss_pred CCC
T ss_conf 774
No 405
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=25.19 E-value=44 Score=13.50 Aligned_cols=174 Identities=17% Similarity=0.259 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHCCCCCCEEE------ECCCCC-HHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999988762136883241------025699-99999874157606975134377773205888898999999999998
Q gi|254780485|r 122 LSIIVDMIKGVKSLGLETCM------TLGMLS-FEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK 194 (328)
Q Consensus 122 ~~~~~e~i~~i~~~~~~i~~------~~g~~~-~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328)
+-++..+.+.++...+.+.. ..|..| +-....|++.|+..+.++.--.|.+|. .+-+.--+-++.|.+
T Consensus 41 ~~~L~~~~~~~~~~~i~vgAQn~~~~~~Ga~TGeiS~~mL~d~G~~~viiGHSERR~~~~-----Et~~~i~~K~~~a~~ 115 (242)
T cd00311 41 FTYLAAVAEALEGSKIKVGAQNVSPEDSGAFTGEISAEMLKDAGAKYVIIGHSERRQYFG-----ETDEDVAKKVKAALE 115 (242)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCHHHHHHCC-----CCHHHHHHHHHHHHH
T ss_conf 899999999835898469840143456888747455999997599989975589898819-----987999999999998
Q ss_pred CCCCCCCEEEECCCCCHHHHHH--HHHHHH----HC----CCCCCEEECCCEEEC--CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7985577078668989999999--999997----40----888860205411204--87412445687989999999999
Q gi|254780485|r 195 SGIKVCCGGILGLGEMIDDRID--MLLTLA----NL----STPPESIPINLLIPI--PGSKFEENKKVDPIEHVRIISVA 262 (328)
Q Consensus 195 ~G~~~~sg~l~G~gEt~eeri~--~l~~lr----~l----~~~~~~v~~~~~~p~--~gt~l~~~~~~~~~e~lr~iAi~ 262 (328)
.|+.. ++=.||+.++|-. ....++ .. ......+ ..+=|. =||. ..+++++.-++++..
T Consensus 116 ~~l~p----I~CiGE~~~~~~~~~~~~~l~~Ql~~~l~~~~~~~~~i--IAYEPvWAIGtG----~~as~~~i~ev~~~I 185 (242)
T cd00311 116 AGLTP----ILCVGETLEEREAGKTEEVVAAQLAAVLAGVEDLAPVV--IAYEPVWAIGTG----KTASPEQAQEVHAFI 185 (242)
T ss_pred CCCCE----EEEECCHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCEE--EEECCHHHCCCC----CCCCHHHHHHHHHHH
T ss_conf 79927----99936606655404399999999999984710103609--997768861899----999999999999999
Q ss_pred HHHCCCC------CCE-EEEHHHHHCHHHHHHHHHHC-CCEEEECCEEECCCCCCHHHHHHHH
Q ss_conf 9968687------214-23115651656899999809-9889977866515888989999999
Q gi|254780485|r 263 RILMPKS------RLR-LAAGRAMMSDELQALCFFSG-ANSIFVGDTLLTAKNPSYNKDTILF 317 (328)
Q Consensus 263 RL~lP~~------~i~-i~~~~~~~~~~~~~~~L~~G-aN~~~~g~~~~t~~g~~~~~~~~~i 317 (328)
|=.+.+. .++ +-+| ++.++.....+..+ +||.++|.- ...++...+++
T Consensus 186 r~~l~~~~~~~~~~v~iLYGG--SV~~~N~~~i~~~~~vdG~LvG~A-----Sl~~~~F~~Ii 241 (242)
T cd00311 186 RKLLAELYGEVAEKVRILYGG--SVNPENAAELLAQPDIDGVLVGGA-----SLKAESFLDII 241 (242)
T ss_pred HHHHHHHCCCCCCCCCEEECC--CCCHHHHHHHHCCCCCCEEEECHH-----HCCHHHHHHHH
T ss_conf 999998620203675489607--789889999956899997885357-----67888999986
No 406
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=25.11 E-value=44 Score=13.49 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHCCCCCCCEEE--ECCCCCHHHHHHHHHHHHHC-----CCCCCEEECCCEEECCCCCCCCCCCCCHHHH
Q ss_conf 9999999999987985577078--66898999999999999740-----8888602054112048741244568798999
Q gi|254780485|r 183 EDRLQTLENVRKSGIKVCCGGI--LGLGEMIDDRIDMLLTLANL-----STPPESIPINLLIPIPGSKFEENKKVDPIEH 255 (328)
Q Consensus 183 ~~~l~~~~~a~~~G~~~~sg~l--~G~gEt~eeri~~l~~lr~l-----~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~ 255 (328)
+..++....+++.|-.+-..-+ =|+..|.|+|++...++.++ +..++-+.+=+++..-+|-.+... -...++
T Consensus 468 e~~~~~~~l~kkYGAavV~L~~DE~G~a~tae~k~~Ia~R~y~~l~~~~Gi~~~dIifDpl~ltv~tg~ee~~-~~a~et 546 (1229)
T PRK09490 468 EKFIHHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILVEEVGFPPEDIIFDPNIFAVATGIEEHN-NYAVDF 546 (1229)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCHHEECCCCHHHH-HHHHHH
T ss_conf 8799987999972974899840677788789999999999999999974998999686143100025836777-589999
Q ss_pred HHHHHHHHHHCCCCCCE-----EEE-------HHHHHCHHHHHHHHHHCCCEEEE
Q ss_conf 99999999968687214-----231-------15651656899999809988997
Q gi|254780485|r 256 VRIISVARILMPKSRLR-----LAA-------GRAMMSDELQALCFFSGANSIFV 298 (328)
Q Consensus 256 lr~iAi~RL~lP~~~i~-----i~~-------~~~~~~~~~~~~~L~~GaN~~~~ 298 (328)
++.+-..+--+|.+.+. ||- .|+.+.--+=..|+.+|-|.-++
T Consensus 547 ieair~ik~~lp~~~t~lGvSNiSFGlrGn~p~R~~lns~FL~~a~~aGLd~aIv 601 (1229)
T PRK09490 547 IEATRWIKENLPHAKISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKAGMDMGIV 601 (1229)
T ss_pred HHHHHHHHHHCCCCEECCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999999997899647222032001477886279999999999999718771555
No 407
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=24.96 E-value=45 Score=13.47 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCC----------CCCCCCCHHHHHHHHHHHCCC-----CCCEEEECCCC----CH
Q ss_conf 685799999999996498389973036----------888744289999988762136-----88324102569----99
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAW----------REPKERDLSIIVDMIKGVKSL-----GLETCMTLGML----SF 148 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~----------~~~~~~~~~~~~e~i~~i~~~-----~~~i~~~~g~~----~~ 148 (328)
.++|.+.+.|..+.+.|...+-+-.|= +.....+.+.+.++++.+++. ++.+-+-+|.- ..
T Consensus 72 ~dpe~~a~aA~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~RlG~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGDRKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHH
T ss_conf 88899999999999769996625479997896689926853289779999999999745878995477535899863199
Q ss_pred HHHHHHHCCCCCEEEEECCCCHHHHHCCCCCC-CHHHHHHHHHHHH-HCCCCCCCEEEECC--CCCHHHHHHHH
Q ss_conf 99998741576069751343777732058888-9899999999999-87985577078668--98999999999
Q gi|254780485|r 149 EQAQILSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVR-KSGIKVCCGGILGL--GEMIDDRIDML 218 (328)
Q Consensus 149 ~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~-~~~~~l~~~~~a~-~~G~~~~sg~l~G~--gEt~eeri~~l 218 (328)
+..+.+.++|++.+.+---|....|. +.. +| +.++.++ .+.+++ +|= +-|.+|..+.+
T Consensus 152 e~~~~~~~~G~~~ltvH~RT~~q~y~---~~~~dw----~~i~~~~~~~~iPv-----i~NGdI~s~~d~~~~~ 213 (312)
T PRK10550 152 EIADAVQQAGATELVVHGRTKEQGYR---AEHIDW----QAIGEIRQRLTIPV-----IANGEIWDWQSAQQCM 213 (312)
T ss_pred HHHHHHHHCCCCEEEEECCCHHHCCC---CCCCCH----HHHHHHHHHCCCCE-----EEECCCCCHHHHHHHH
T ss_conf 99999997399879990552653589---983489----99999997489989-----9707959999999998
No 408
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=24.75 E-value=45 Score=13.44 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEE--------EEC----CCCCHHHHHHH
Q ss_conf 999874157606975134377773205888898999999999998798557707--------866----89899999999
Q gi|254780485|r 150 QAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGG--------ILG----LGEMIDDRIDM 217 (328)
Q Consensus 150 ~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~--------l~G----~gEt~eeri~~ 217 (328)
..++|.++|++.+. +|... +..++++.+.+.|+++++++ .+| -|-+.++.-..
T Consensus 94 na~~l~~~Ga~aVK--lEgg~-------------~~~~~i~~L~~~gIpV~gHiGltPQ~~~~~gg~k~qGk~~~~a~~l 158 (240)
T cd06556 94 LAKTFMRAGAAGVK--IEGGE-------------WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQL 158 (240)
T ss_pred HHHHHHHCCCCEEE--ECCCH-------------HHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCEEECCCHHHHHHH
T ss_conf 99999985999899--79875-------------0899999999879947976358860011047722432768999999
Q ss_pred HHHHHHCCC
Q ss_conf 999974088
Q gi|254780485|r 218 LLTLANLST 226 (328)
Q Consensus 218 l~~lr~l~~ 226 (328)
+...+.++.
T Consensus 159 ~~dA~ale~ 167 (240)
T cd06556 159 IADALAYAP 167 (240)
T ss_pred HHHHHHHHH
T ss_conf 999999984
No 409
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=24.58 E-value=45 Score=13.42 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC-CCC-------CCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 00068579999999999649838997303688-874-------4289999988762136883241
Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWRE-PKE-------RDLSIIVDMIKGVKSLGLETCM 141 (328)
Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~-~~~-------~~~~~~~e~i~~i~~~~~~i~~ 141 (328)
-+..+.+.++++++.+.+.|++-+.+-+...+ .+. .+-.-+...++.+|+.++.+.+
T Consensus 48 i~r~sid~l~~~v~~~~~lGI~av~LFgvi~~~~KD~~Gs~A~n~~g~v~rair~iK~~fpdl~v 112 (320)
T cd04823 48 VFRLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGI 112 (320)
T ss_pred CCEECHHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 60658999999999999889978999546655533788870058655899999999997898099
No 410
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=24.41 E-value=46 Score=13.40 Aligned_cols=249 Identities=13% Similarity=0.153 Sum_probs=115.0
Q ss_pred HHHHHHHHCCCCCCCCH-------HHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEE-C-CCCCCCCCCCCCCC
Q ss_conf 73213420023447899-------999999739918999999999888628985699986453-0-78683423212433
Q gi|254780485|r 5 TVVPEENPTKKPKVWTS-------KEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNI-K-TGGCPENCGYCNQS 75 (328)
Q Consensus 5 ~~~~~~~~~~~~e~ls~-------eea~~L~~~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~-~-TN~C~~~C~fCaf~ 75 (328)
+++.+.-+......|+. ++..+|+.-+..++-+--. ...-...|+.|-++--+.| | |.
T Consensus 32 kli~re~t~~dCp~L~~~kf~k~l~kl~eLlaP~vkevtiG~g-e~~v~iGGdeVlyRheLtffNpt~------------ 98 (467)
T COG1456 32 KLIDREATPDDCPPLIKEKFAKKLEKLDELLAPEVKEVTIGVG-EKAVVIGGDEVLYRHELTFFNPTP------------ 98 (467)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCEEEECCCCEEEEEEEEEECCCC------------
T ss_conf 9861566801186436477888999999750864047886277-522565562115763454307984------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE---EE-E-ECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHH
Q ss_conf 54777564100068579999999999649838---99-7-3036888744289999988762136883241025699999
Q gi|254780485|r 76 VHNKSKLKASKLINVDQVLKEAKNAKENGATR---YC-M-GAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQ 150 (328)
Q Consensus 76 ~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~---~~-l-~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~ 150 (328)
-....+..++.|++.+.+.++.+.-..+ .. + .-..+ ....+.+.|.++++.+.+.++.++... .+.+.
T Consensus 99 ----~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair-~~Sgdpekfa~ave~v~~~~~pv~l~s--~dpev 171 (467)
T COG1456 99 ----MFVDVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIR-NRSGDPEKFAEAVEKVAEAGLPVILCS--FDPEV 171 (467)
T ss_pred ----EEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCEEEEE--CCHHH
T ss_conf ----48877665888999999999988878642444665269998-168997999999999986589679995--79999
Q ss_pred ----HHHHHCCCCCEEEEECCCCHHHHHC----CC-----CCCCHHHHHHHHHHHHHCCCCCC--CEEEECCCCCHHHHH
Q ss_conf ----9987415760697513437777320----58-----88898999999999998798557--707866898999999
Q gi|254780485|r 151 ----AQILSKAGLDYYNHNIDTSERFYPH----VT-----TTHTFEDRLQTLENVRKSGIKVC--CGGILGLGEMIDDRI 215 (328)
Q Consensus 151 ----~~~Lk~aG~~~~~~~let~~~~~~~----~~-----~~~~~~~~l~~~~~a~~~G~~~~--sg~l~G~gEt~eeri 215 (328)
+..+++.-.-.|-..-|.-.++.+. .+ ...+.++-.......+++|++-- --.-+-.||...+-+
T Consensus 172 mkaaLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~dl~~lk~la~~~~~~Gi~divLdPgT~p~~egl~~T~ 251 (467)
T COG1456 172 MKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQAGIKDIVLDPGTYPGGEGLKDTF 251 (467)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHH
T ss_conf 99999876126852543320139999998844487579855677899999999999739752776688656865366888
Q ss_pred HHHHHHHHCCC----CCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999974088----8860205411204874124456879899999999999968687214231
Q gi|254780485|r 216 DMLLTLANLST----PPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAA 275 (328)
Q Consensus 216 ~~l~~lr~l~~----~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~ 275 (328)
+....||.... ....+|+..+ |.+--.+....+.+....--++ .+-+|.-...|.|-.
T Consensus 252 d~~v~iRr~aIe~~d~~~~yPim~~-p~~~~~~~~dd~V~a~~~Ea~i-As~~~~rYaDilI~~ 313 (467)
T COG1456 252 DNFVMIRRAAIEGFDKDFAYPIMAL-PFTAWMFGEDDPVSASYWEAVI-ASTFMNRYADILILH 313 (467)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEC-CHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHCCEEEEC
T ss_conf 8899999987615675335504405-3245552267537788999999-999998633167750
No 411
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=24.13 E-value=46 Score=13.37 Aligned_cols=171 Identities=16% Similarity=0.229 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC----CCCCCEEEECCCCCHHHHHHHHCCCCCEEEE
Q ss_conf 857999999999964983899730368887442899999887621----3688324102569999999874157606975
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK----SLGLETCMTLGMLSFEQAQILSKAGLDYYNH 164 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~----~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~ 164 (328)
+.++.++.++.+.+.|+.-+.+ -..... ...+.+.++.++ ..+..+.++ +.+.-..+.++|.+++
T Consensus 18 ~~~~~~~~~~~~l~~Gv~~vQl--R~K~~~---~~~~~~~a~~l~~i~~~~~~~liIN------d~~~lA~~~~adGvHL 86 (210)
T PRK00043 18 STGDLLEVVEAALAGGVTLVQL--REKGAD---ARERLELARALKALCRRYGVPLIVN------DRVDLALAVGADGVHL 86 (210)
T ss_pred CCCCHHHHHHHHHHCCCCEEEE--CCCCCC---HHHHHHHHHHHHHHHHHHCCEEEEC------CHHHHHHHHCCCEEEC
T ss_conf 4554999999999869999999--269989---9999999999999999809959976------8899998719998976
Q ss_pred ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC
Q ss_conf 1343777732058888989999999999987985577078668-989999999999997408888602054112048741
Q gi|254780485|r 165 NIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328)
Q Consensus 165 ~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328)
.++..+ + ..+++. .....++|. ..+.+|.... ..++.. -+.++++.|..--|
T Consensus 87 gq~d~~---------------~---~~~r~~---l~~~~iiG~S~h~~~e~~~A----~~~gaD--Yi~~Gpvf~T~tK~ 139 (210)
T PRK00043 87 GQDDLP---------------V---ADARAI---LGPDAIIGVSTHTLEEAAAA----AAAGAD--YVGVGPIFPTPTKK 139 (210)
T ss_pred CCCCCC---------------H---HHHHHH---CCCCCEEEEECCCHHHHHHH----HHHCCC--EEEECCCCCCCCCC
T ss_conf 988768---------------9---999975---19887899847999999999----882898--38874521479888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCC
Q ss_conf 244568798999999999999686872142311565165689999980998899778665158
Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAK 306 (328)
Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~ 306 (328)
- ..++.. .+.++.++-. . .+++-+ -..+..+.....+.+||+++-+-..+..+.
T Consensus 140 ~-~~~~~g-~~~l~~~~~~---~---~iPvvA-IGGI~~~ni~~~~~~Ga~giAvis~I~~a~ 193 (210)
T PRK00043 140 D-AKPAVG-LELLREAREA---I---DIPIVA-IGGITPENAAEVLEAGADGVAVVSAITAAE 193 (210)
T ss_pred C-CCCCCC-HHHHHHHHHH---C---CCCEEE-ECCCCHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf 8-877789-9999999984---7---999899-808899999999980999999708977699
No 412
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=23.84 E-value=47 Score=13.33 Aligned_cols=179 Identities=17% Similarity=0.222 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHH-----HHCCC--CCCEEEECCCCCHHHHHHHHCCC
Q ss_conf 006857999999999964983899730368887442899999887-----62136--88324102569999999874157
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIK-----GVKSL--GLETCMTLGMLSFEQAQILSKAG 158 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~-----~i~~~--~~~i~~~~g~~~~~~~~~Lk~aG 158 (328)
.+-+++-+...|+.+...|+.-+...+ ..++.-+-+.+. .+|.. +..+.+ ..+.++...|.++|
T Consensus 18 Pl~~~~im~~mA~Aa~~gGA~giR~~~------~~dI~aik~~v~lPIIGi~K~~~~~s~VyI---TPt~~ev~~l~~aG 88 (222)
T PRK01130 18 PLHSPEIMAAMALAAEQGGAVGIRANG------VEDIKAIREVVDVPIIGIIKRDYPDSEVYI---TPTLKEVDALAAAG 88 (222)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEECCC------HHHHHHHHHHCCCCEEEEEECCCCCCCEEE---CCCHHHHHHHHHCC
T ss_conf 978879999999999968962997189------889999998479987999954689997375---17699999999869
Q ss_pred CCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE--ECCC
Q ss_conf 6069751343777732058888989999999999987-985577078668989999999999997408888602--0541
Q gi|254780485|r 159 LDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS-GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI--PINL 235 (328)
Q Consensus 159 ~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~-G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v--~~~~ 235 (328)
++.+- +|...+ .-+.+.+.++-++ ..|+- |.. +..=.-|.||-. ...+++. +.| .+.-
T Consensus 89 adiIA--~DaT~R---~RP~g~~~~~~i~---~i~~~~~~l-----~MAD~st~eea~----~A~~~G~--D~V~TTLsG 149 (222)
T PRK01130 89 ADIIA--LDATLR---PRPDGETLAELVK---RIKEKPGQL-----LMADCSTLEEGL----AAAKLGF--DFIGTTLSG 149 (222)
T ss_pred CCEEE--EECCCC---CCCCCCCHHHHHH---HHHHHHCCE-----EEEECCCHHHHH----HHHHCCC--CEEECCCCC
T ss_conf 99999--846789---8989968999999---999982987-----898548899999----9998499--999723345
Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf 1204874124456879899999999999968687214231156516568999998099889977866
Q gi|254780485|r 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 236 ~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
+++ .|.-.. ...++.++++-++-. +. .-|+=|+.. .++....+|..||+++.+|.-+
T Consensus 150 YT~--~t~~~~-~~~pD~~lv~~l~~~-----~~-pvIaEGri~-tPe~a~~al~~GA~aVvVGsAI 206 (222)
T PRK01130 150 YTE--YTEGET-PEEPDFALLKELLKA-----GC-PVIAEGRIN-TPEQAKKALELGAHAVVVGSAI 206 (222)
T ss_pred CCC--CCCCCC-CCCCCHHHHHHHHHC-----CC-CEEEECCCC-CHHHHHHHHHCCCCEEEECCCC
T ss_conf 676--767787-899869999999958-----99-899747989-9999999998499899989754
No 413
>pfam08671 SinI Anti-repressor SinI. SinR is a pleiotropic regulator of several late growth processes. It is a tetrameric DNA binding protein whose activity is down-regulated thorough the formation of a SinI:SinR protein complex. When complexed with SinI, the SinR tetramer is disrupted such that is no longer able to bind DNA.
Probab=23.74 E-value=47 Score=13.32 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999998798
Q gi|254780485|r 183 EDRLQTLENVRKSGI 197 (328)
Q Consensus 183 ~~~l~~~~~a~~~G~ 197 (328)
++|++.++.|++.|+
T Consensus 3 ~EW~~Li~EA~~~Gi 17 (30)
T pfam08671 3 QEWVQLIKEAMEAGL 17 (30)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 799999999998146
No 414
>pfam08981 consensus
Probab=23.69 E-value=47 Score=13.31 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE---EEC-------CCCCHHHHHHHHCCC
Q ss_conf 8579999999999649838997303688874428999998876213688324---102-------569999999874157
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETC---MTL-------GMLSFEQAQILSKAG 158 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~---~~~-------g~~~~~~~~~Lk~aG 158 (328)
+.+-+...++.+++.|++++++-+... ..-....++++ ..++.+. .+. ..++++..++|++.|
T Consensus 10 T~~tl~~a~~ra~e~gI~~iVvASssG----~TA~k~~e~~~---~~~~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G 82 (181)
T pfam08981 10 TEDTLELAAERAKELGIKHIVVASSSG----ETALKAAEALE---GTNLNVVVVTHHAGFSEPGEQEMDPEVRKELEERG 82 (181)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCC----HHHHHHHHHHC---CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 899999999999976997699980787----79999998713---58955999946457789985638999999999779
Q ss_pred CCEEE--EECCCC-HHHHHCCCCCCCHHHHH-HHHHHHHHCCCCCCCEE--E---ECCCCCHHHHH
Q ss_conf 60697--513437-77732058888989999-99999998798557707--8---66898999999
Q gi|254780485|r 159 LDYYN--HNIDTS-ERFYPHVTTTHTFEDRL-QTLENVRKSGIKVCCGG--I---LGLGEMIDDRI 215 (328)
Q Consensus 159 ~~~~~--~~let~-~~~~~~~~~~~~~~~~l-~~~~~a~~~G~~~~sg~--l---~G~gEt~eeri 215 (328)
+.-+. |-+-.. +.+..+. .+.++.+-+ ++++. -..|+++|.-+ | -|+..+-+|++
T Consensus 83 ~~V~t~tH~lsg~eR~is~kf-gG~~p~eiiA~tLR~-fgqG~KV~vEi~lMAaDaGlIp~~eeVI 146 (181)
T pfam08981 83 VKVLTGTHALSGLERAISNKF-GGISPVEIIAETLRM-LGQGVKVCVEIALMAADAGLIPVGEEVI 146 (181)
T ss_pred CEEEEECCCCCCCHHHHCCCC-CCCCHHHHHHHHHHH-HCCCCEEEEEEEEEECCCCCCCCCCEEE
T ss_conf 889995031344235411004-797989999999997-2897479999988750678778898389
No 415
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator; InterPro: IPR011794 This entry represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon . This protein is a member of the MerR family of transcriptional activators and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix .; GO: 0003677 DNA binding, 0045340 mercury ion binding, 0045449 regulation of transcription, 0046689 response to mercury ion.
Probab=23.58 E-value=29 Score=14.75 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHCCCCC-CCEEEECCCCC
Q ss_conf 9899999999999879855-77078668989
Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKV-CCGGILGLGEM 210 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~G~~~-~sg~l~G~gEt 210 (328)
+.-+|+..+|.|+++|+.. =.+-|+|+.+.
T Consensus 41 ~~v~R~rFIKR~QeLGFsL~EI~~LL~l~D~ 71 (126)
T TIGR02051 41 ETVKRVRFIKRAQELGFSLEEIGKLLGLVDG 71 (126)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf 5443645544200037978899987061167
No 416
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=23.36 E-value=48 Score=13.27 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=7.9
Q ss_pred HHHHHHCCCEEEECC
Q ss_conf 999980998899778
Q gi|254780485|r 286 ALCFFSGANSIFVGD 300 (328)
Q Consensus 286 ~~~L~~GaN~~~~g~ 300 (328)
-+||-+||+.+|+|.
T Consensus 217 ~KAla~GAd~VM~G~ 231 (326)
T PRK05458 217 AKSIRFGATMVMIGS 231 (326)
T ss_pred HHHHHCCCCEEEECC
T ss_conf 999864898898671
No 417
>KOG0623 consensus
Probab=23.31 E-value=48 Score=13.27 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=5.0
Q ss_pred HHHHHHCCCCCCC
Q ss_conf 9999982985324
Q gi|254780485|r 314 TILFNRLGLIPDL 326 (328)
Q Consensus 314 ~~~i~~~G~~P~~ 326 (328)
++++++.=-+|++
T Consensus 477 v~lvkdsV~IPVI 489 (541)
T KOG0623 477 VKLVKDSVGIPVI 489 (541)
T ss_pred HHHHHCCCCCCEE
T ss_conf 9876413687468
No 418
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.29 E-value=20 Score=15.89 Aligned_cols=14 Identities=21% Similarity=0.736 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 86834232124335
Q gi|254780485|r 63 GGCPENCGYCNQSV 76 (328)
Q Consensus 63 N~C~~~C~fCaf~~ 76 (328)
-+|+..|.||+--.
T Consensus 23 ~ICtfEcTFCadCa 36 (84)
T COG3813 23 RICTFECTFCADCA 36 (84)
T ss_pred EEEEEEEEHHHHHH
T ss_conf 47887600257578
No 419
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=23.27 E-value=48 Score=13.26 Aligned_cols=166 Identities=14% Similarity=0.158 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH----HHHHHHHHHHCCCEE
Q ss_conf 1899999999988862898569998645307868342321243354777564100068579----999999999649838
Q gi|254780485|r 32 FNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQ----VLKEAKNAKENGATR 107 (328)
Q Consensus 32 ~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Ee----i~~~a~~~~~~G~~~ 107 (328)
..++-.+|.++.|+-..|+.+++-+.+.= ++. +.. .. .++.++ ..+.++...+.|+--
T Consensus 81 v~eIN~aav~lAreAa~g~~~~VAGsIGP-~~~------~~~-----~~------~~~~~e~~~~f~eQ~~~L~e~GvD~ 142 (608)
T PRK08645 81 VKEINQAAVRLAKEAAEGKDTYILGTIGP-IRG------DGP-----QG------DLSLEEILEEFREQIDALLEEGVDG 142 (608)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCC-CCC------CCC-----CC------CCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999999817998499995388-788------999-----99------9999999999999999997579989
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEE--EEC--------CCCCHHHHHHHHCCCCCEEEEECCCCH------
Q ss_conf 997303688874428999998876213-688324--102--------569999999874157606975134377------
Q gi|254780485|r 108 YCMGAAWREPKERDLSIIVDMIKGVKS-LGLETC--MTL--------GMLSFEQAQILSKAGLDYYNHNIDTSE------ 170 (328)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~e~i~~i~~-~~~~i~--~~~--------g~~~~~~~~~Lk~aG~~~~~~~let~~------ 170 (328)
+.+-+ ..+++.+..+++.+++ .++.+. ++. |..-++.+..+.+.|+|.+.+|=-+-|
T Consensus 143 illET------~~dl~E~~~Al~aar~~~~lPvi~s~t~~~~G~t~~G~~~~~a~~~l~~~gad~VG~NC~~GP~~m~~~ 216 (608)
T PRK08645 143 LLLET------FYDLEELLEALKAARKKTDLPIIAQVAFHEDGVTQNGTSLEEALKQLVALGADVVGLNCGLGPYHMLEA 216 (608)
T ss_pred EEEEH------HCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHH
T ss_conf 99863------059999999999999756997999999889980899997999999986289988988797899999999
Q ss_pred --HH---------------HHCCCC-----CCCHHHHHHHHHHHHHCCCCCCCEEEEC-CCCCHHHHHHHHHHHHHCC
Q ss_conf --77---------------320588-----8898999999999998798557707866-8989999999999997408
Q gi|254780485|r 171 --RF---------------YPHVTT-----THTFEDRLQTLENVRKSGIKVCCGGILG-LGEMIDDRIDMLLTLANLS 225 (328)
Q Consensus 171 --~~---------------~~~~~~-----~~~~~~~l~~~~~a~~~G~~~~sg~l~G-~gEt~eeri~~l~~lr~l~ 225 (328)
.+ +++... ..+.++.-+.++.+.+.|.++ +=| =|-|++|+-.....++.+.
T Consensus 217 l~~l~~~~~~pl~v~PNAGlP~~~~gr~~Y~~tPe~Fa~~a~~~~~~Ga~i----IGGCCGTTPeHIraia~al~~~~ 290 (608)
T PRK08645 217 LKRIELPADAPLSAYPNAGLPEYVEGRYVYSANPEYFAEYAREFVEEGVRL----IGGCCGTTPEHIRAMKEALRGLK 290 (608)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCE----EEECCCCCHHHHHHHHHHHCCCC
T ss_conf 999874259818997889998878983027899999999999999859979----97577999999999999844789
No 420
>PRK13227 consensus
Probab=23.01 E-value=49 Score=13.23 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHCCCCC
Q ss_conf 9999999999879855
Q gi|254780485|r 184 DRLQTLENVRKSGIKV 199 (328)
Q Consensus 184 ~~l~~~~~a~~~G~~~ 199 (328)
.-.++++.+++.|+++
T Consensus 100 gv~~~L~~Lk~~g~~~ 115 (228)
T PRK13227 100 NVKETLEALKAQGYPL 115 (228)
T ss_pred CHHHHHHHHHHCCCCE
T ss_conf 6999999999879965
No 421
>TIGR02706 P_butyryltrans phosphate butyryltransferase; InterPro: IPR014079 Members of this family are phosphate butyryltransferase enzymes, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. This entry does not include the homologue from Thermotoga maritima, whose activity on butyryl-CoA is only 30 0f its activity with acetyl-CoA..
Probab=23.00 E-value=49 Score=13.23 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 06857999999999964983899730
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGA 112 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~ 112 (328)
.-.+|++++.++.+.+.|+-++.|+|
T Consensus 20 ~A~DE~VlEAvk~A~E~~ia~aiLvG 45 (295)
T TIGR02706 20 VAQDEPVLEAVKEAKEKGIARAILVG 45 (295)
T ss_pred ECCCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 50892479999998655906788847
No 422
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=23.00 E-value=49 Score=13.23 Aligned_cols=188 Identities=13% Similarity=0.133 Sum_probs=85.9
Q ss_pred HHHHHHHH-HHHCCCCCCEEEECCCCCHHHHH----HHHCC-CCCEEEEECCCCHHHH-HCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999988-76213688324102569999999----87415-7606975134377773-205888898999999999998
Q gi|254780485|r 122 LSIIVDMI-KGVKSLGLETCMTLGMLSFEQAQ----ILSKA-GLDYYNHNIDTSERFY-PHVTTTHTFEDRLQTLENVRK 194 (328)
Q Consensus 122 ~~~~~e~i-~~i~~~~~~i~~~~g~~~~~~~~----~Lk~a-G~~~~~~~let~~~~~-~~~~~~~~~~~~l~~~~~a~~ 194 (328)
.+++++.+ +..++.+..+.+|++-.+.+++. ++.++ |+|.+.+|+- +|..- ....-..+.+..-++++.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~pvi~si~~~~~~d~~~~~~~l~~~~~ad~ielNiS-cPn~~~~g~~~~~~~~~l~~i~~~v~~ 154 (301)
T PRK07259 76 VDAFIEEELPWLEEFDTPIIANIAGSTPEEYVEVAEKLSKAPNVDAIELNIS-CPNVKHGGMAFGTDPELAYEVVKAVKS 154 (301)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECC-CCCCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999997642069987997376776899999998645568888999654-788885266608799999999999987
Q ss_pred C-CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-CCCEEECC------CCCC-CC-CCCCCH----HHHHHHHH
Q ss_conf 7-9855770786689899999999999974088886020-54112048------7412-44-568798----99999999
Q gi|254780485|r 195 S-GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-INLLIPIP------GSKF-EE-NKKVDP----IEHVRIIS 260 (328)
Q Consensus 195 ~-G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~~~~~p~~------gt~l-~~-~~~~~~----~e~lr~iA 260 (328)
. -++ +++=+.-...+..+....+.+-+. +++. +|.+ +.. ..|. .+ ....|. .-.+++++
T Consensus 155 ~~~~P----v~vKlsP~~~~i~~ia~~~~~~ga--dgvv~~Nt~-~~~~id~~~~~p~~~~~~GGlSG~~l~~~al~~v~ 227 (301)
T PRK07259 155 VSKVP----VIVKLTPNVTDIVEIAKAAEEAGA--DGLSLINTL-KGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVY 227 (301)
T ss_pred HCCCC----EEEEECCCHHHHHHHHHHHHHCCC--CEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 34897----799807871219999999997599--889995677-67653235677433578886347335189999999
Q ss_pred HHHHHCCCCCCE-EEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC-----HHHHHHHHHHCCCC
Q ss_conf 999968687214-2311565165689999980998899778665158889-----89999999982985
Q gi|254780485|r 261 VARILMPKSRLR-LAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS-----YNKDTILFNRLGLI 323 (328)
Q Consensus 261 i~RL~lP~~~i~-i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~-----~~~~~~~i~~~G~~ 323 (328)
..+=.. + ++ |.+|=..-+ +-....+.+||+.+.++--+ - .|+. .++..+.+++-||.
T Consensus 228 ~~~~~~-~--ipIig~GGI~s~-~da~e~i~aGAs~VQv~Tav-~-~Gp~~~~~i~~~L~~~l~~~G~~ 290 (301)
T PRK07259 228 QVAKAV-D--IPIIGMGGISTA-EDAIEFMMAGASAVQVGTAN-F-IDPYAFPEIIEGLEAYLDEEGIK 290 (301)
T ss_pred HHHHHC-C--CCEEEECCCCCH-HHHHHHHHCCCCHHHHHHHH-H-CCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 998516-9--888976797999-99999998398798721233-1-49069999999999999984999
No 423
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.93 E-value=49 Score=13.22 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=7.0
Q ss_pred HHHHHCCCCCEEEEECCC
Q ss_conf 998741576069751343
Q gi|254780485|r 151 AQILSKAGLDYYNHNIDT 168 (328)
Q Consensus 151 ~~~Lk~aG~~~~~~~let 168 (328)
...+++.|..-+...=||
T Consensus 160 A~~l~~~g~~VllaA~DT 177 (340)
T COG0552 160 AKYLKQQGKSVLLAAGDT 177 (340)
T ss_pred HHHHHHCCCEEEEEECCH
T ss_conf 999997898699982334
No 424
>TIGR00973 leuA_bact 2-isopropylmalate synthase; InterPro: IPR005671 The branched-chain amino acids are synthesised by a common pathway that leads from pyruvate and alpha-ketobutyrate to valine and isoleucine, and a branch that leads from the immediate precursor of valine, alpha-ketoisovalerate, to leucine . This pathway operates in archaea, bacteria, fungi and plants, but not mammals, making the enzymes suitable targets for the development of novel antibiotics and herbicides. Isopropylmalate synthase is the enzyme responsible for the the first committed step in the leucine branch of this biosynthetic pathway, the conversion of alpha-ketoisovalerate to alpha-isopropylmalate. It is either dimeric or tetrameric, depending on the organism, with a monomer molecular mass of 60-70 kDa, a dependence on divalent metal ions for activity, and an alkaline pH optimum , , , . Like many other biosynthetic enzymes it is subject to feedback inhibition by the end product of the pathway, leucine. This entry represents the isopropylmalate synthase most commonly found in bacteria. A related form of this enzyme is found mainly in eukaryotes and some other bacteria (IPR005668 from INTERPRO). A homologous family in archaea may represent isozymes and/or related enzymes (IPR005675 from INTERPRO). ; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=22.83 E-value=49 Score=13.20 Aligned_cols=204 Identities=19% Similarity=0.184 Sum_probs=121.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHH---HHHHHH--CCC
Q ss_conf 006857999999999964983899730368-88744289999988762136-88324102569999---999874--157
Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWR-EPKERDLSIIVDMIKGVKSL-GLETCMTLGMLSFE---QAQILS--KAG 158 (328)
Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~-~~~~~~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~---~~~~Lk--~aG 158 (328)
..|+.||=++.|+.+.++|.-- ...|- -.+..+||-.=++-|.+|.. +|-||.=+-....+ .++.|| .+-
T Consensus 18 asl~v~EKL~iA~~LerLGVDi---iEaGFP~sS~GDFEaVq~IA~~vk~~~GPvv~gLARav~kDIdaA~EALKdr~a~ 94 (514)
T TIGR00973 18 ASLTVEEKLQIALALERLGVDI---IEAGFPVSSPGDFEAVQRIARTVKNPRGPVVCGLARAVEKDIDAAAEALKDRPAE 94 (514)
T ss_pred CCCCHHHHHHHHHHHHHCCCCE---EEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7410799999999998629848---9836777885106899999986178888677403440023589999971177011
Q ss_pred CCEEEEECCCCHHHHHCCCCCCCHHHHHHHH----HHHHHCC--CCCCCEEEECCCC--C---HHHHHHHHHHHHHCCCC
Q ss_conf 6069751343777732058888989999999----9999879--8557707866898--9---99999999999740888
Q gi|254780485|r 159 LDYYNHNIDTSERFYPHVTTTHTFEDRLQTL----ENVRKSG--IKVCCGGILGLGE--M---IDDRIDMLLTLANLSTP 227 (328)
Q Consensus 159 ~~~~~~~let~~~~~~~~~~~~~~~~~l~~~----~~a~~~G--~~~~sg~l~G~gE--t---~eeri~~l~~lr~l~~~ 227 (328)
-.+++.++=|||-.... .=+.+.++-|+.+ +.|++.= +..+| | + .+..++-+...-+-+..
T Consensus 95 ~~RIHtFIATS~iH~~~-KLk~t~~~Vler~~~~V~yAk~~~ddVEFS~-------EDA~Rte~~fL~~~~E~AI~AGAT 166 (514)
T TIGR00973 95 KFRIHTFIATSPIHLEH-KLKMTRDEVLERAVKMVKYAKNFTDDVEFSC-------EDAGRTEIEFLARVVEAAINAGAT 166 (514)
T ss_pred CCCCEEEECCCHHHHHH-HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 46540786386789977-4168988999999999988763287310267-------778898738999999999827982
Q ss_pred CCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE-EEEHHHHHCHHHHH------HHHHHCCC---EEE
Q ss_conf 860205411204874124456879899999999999968687214-23115651656899------99980998---899
Q gi|254780485|r 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLR-LAAGRAMMSDELQA------LCFFSGAN---SIF 297 (328)
Q Consensus 228 ~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~-i~~~~~~~~~~~~~------~~L~~GaN---~~~ 297 (328)
.+-+|+| ..=..|.||-.+|.-.|=-.||..-- ||. . =..|++. -|.+.||. .+|
T Consensus 167 --------tINiPDT----VGY~~P~EyG~lI~~~~e~VPNIdka~lSV--H-cHdDLGLAvANSL~AV~nGArQvEcti 231 (514)
T TIGR00973 167 --------TINIPDT----VGYALPAEYGNLIKGLRENVPNIDKAILSV--H-CHDDLGLAVANSLAAVKNGARQVECTI 231 (514)
T ss_pred --------EEECCCC----HHCCCHHHHHHHHHHHHCCCCCCCEEEEEE--E-CCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf --------8726864----000344789999999851788846117876--1-447156889989999972881898631
Q ss_pred --ECCEEECCCCCCHHHHHHHHH
Q ss_conf --778665158889899999999
Q gi|254780485|r 298 --VGDTLLTAKNPSYNKDTILFN 318 (328)
Q Consensus 298 --~g~~~~t~~g~~~~~~~~~i~ 318 (328)
+|| .++|.+.||.+-.++
T Consensus 232 NGIGE---RAGNaaLEE~vmALk 251 (514)
T TIGR00973 232 NGIGE---RAGNAALEEVVMALK 251 (514)
T ss_pred CCCCH---HHHHHHHHHHHHHHH
T ss_conf 46620---022347999999999
No 425
>pfam04898 Glu_syn_central Glutamate synthase central domain. The central domain of glutamate synthase connects the amino terminal amidotransferase domain with the FMN-binding domain and has an alpha / beta overall topology. This domain appears to be a rudimentary form of the FMN-binding TIM barrel according to SCOP.
Probab=22.68 E-value=49 Score=13.18 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=10.9
Q ss_pred HHHHHCCCCCCCEEEECCCCCHH
Q ss_conf 99998798557707866898999
Q gi|254780485|r 190 ENVRKSGIKVCCGGILGLGEMID 212 (328)
Q Consensus 190 ~~a~~~G~~~~sg~l~G~gEt~e 212 (328)
..+-+.|+++.+++++=-||-++
T Consensus 185 h~Lir~glR~~~sIVVeSge~re 207 (288)
T pfam04898 185 HHLIRKGLRTKVSLVVETGEARE 207 (288)
T ss_pred HHHHHCCCCCCCCEEEEECCCCC
T ss_conf 99997486545516887344245
No 426
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=22.64 E-value=50 Score=13.18 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=7.8
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999999879855
Q gi|254780485|r 185 RLQTLENVRKSGIKV 199 (328)
Q Consensus 185 ~l~~~~~a~~~G~~~ 199 (328)
-.++++.+++.|++.
T Consensus 87 v~e~L~~L~~~g~~l 101 (214)
T PRK13288 87 VYETLQTLKKQGYKL 101 (214)
T ss_pred HHHHHHHHHHCCCCE
T ss_conf 999999999779926
No 427
>TIGR03554 F420_G6P_DH glucose-6-phosphate dehydrogenase, F420-dependent. This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases.
Probab=22.57 E-value=50 Score=13.17 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=16.0
Q ss_pred HHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHH
Q ss_conf 51656899999809988997786651588898999999
Q gi|254780485|r 279 MMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTIL 316 (328)
Q Consensus 279 ~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~ 316 (328)
.+-.+++++ ..+|+|.++.. ..|....+.+++
T Consensus 290 evieki~~y-~daGvd~~il~-----~~g~d~~~~iel 321 (331)
T TIGR03554 290 EAVEQVGQY-VDWGLNHLVFH-----APGHDQRRFLEL 321 (331)
T ss_pred HHHHHHHHH-HHCCCCEEEEE-----CCCCCHHHHHHH
T ss_conf 999999999-97699879995-----999887999999
No 428
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=22.50 E-value=50 Score=13.16 Aligned_cols=185 Identities=16% Similarity=0.218 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCC-C---------------CCHHHHHHHHHHHCCCCC---CEEEE---C--C
Q ss_conf 857999999999964983899730368887-4---------------428999998876213688---32410---2--5
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPK-E---------------RDLSIIVDMIKGVKSLGL---ETCMT---L--G 144 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~---------------~~~~~~~e~i~~i~~~~~---~i~~~---~--g 144 (328)
+.|.-++.++.+.+.|+.-+-++.=.-+|. + -.++.+.++++.++.... .+.+. + .
T Consensus 21 ~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~~pivlM~Y~N~i~~ 100 (258)
T pfam00290 21 DLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKGTSVPIVLMTYYNPVLN 100 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHH
T ss_conf 98999999999997699999978998887665899999999999869969999999998551289988899852088987
Q ss_pred CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 69999999874157606975134377773205888898999999999998798557707866898999999999999740
Q gi|254780485|r 145 MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL 224 (328)
Q Consensus 145 ~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l 224 (328)
.-.+.-+++++++|++.+++ |.-.+++.-+..+.+++.|+..- .++- .-|.++|+..+.....
T Consensus 101 ~G~e~F~~~~~~~GvdGvIi-------------pDLP~eE~~~~~~~~~~~~l~~I--~lvs-Ptt~~~Ri~~i~~~s~- 163 (258)
T pfam00290 101 YGIERFYAQAAEAGVDGLII-------------PDLPPEEADPLREAAEKHGIDLI--FLVA-PTTSDERLKTISEAAS- 163 (258)
T ss_pred CCHHHHHHHHHHCCCCEEEC-------------CCCCHHHHHHHHHHHHHCCCCEE--EEEC-CCCCHHHHHHHHHHCC-
T ss_conf 29999999999759977870-------------79998899999999984584358--8845-8881999999996089-
Q ss_pred CCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 8888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 225 STPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 225 ~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
.++ ..+...|+.-.. .....+....+.-.|=.- .+++..|-.--.++ +-..+..+||++++|..++
T Consensus 164 ----gFi---Y~vs~~GvTG~~--~~~~~~~~~~i~~ik~~t---~~Pv~vGFGIs~~e-~v~~~~~~aDGvIVGSaiv 229 (258)
T pfam00290 164 ----GFV---YLVSRAGVTGAR--NAFNAQLDELVERLKKYT---NVPVAVGFGISTPE-HVKKIAAGADGVIVGSAIV 229 (258)
T ss_pred ----CEE---EEEECCCCCCCC--CCCCHHHHHHHHHHHHCC---CCCEEEEECCCCHH-HHHHHHCCCCEEEECHHHH
T ss_conf ----808---998534456765--556388999999998606---99848994579999-9999981599999849999
No 429
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=22.45 E-value=50 Score=13.15 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE
Q ss_conf 7989999999999996868721423115651656899999809988997786
Q gi|254780485|r 250 VDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT 301 (328)
Q Consensus 250 ~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~ 301 (328)
+++.+..+++..+|-..|+..|-.-+ + ..+.......+|||-++.+++
T Consensus 490 ~d~~~~~~iv~~~r~~~p~~~IiaRa-~---~~~~~~~L~~aGA~~VV~~~~ 537 (558)
T PRK10669 490 PNGYEAGEIVASAREKNPDIEIIARA-H---YDDEVAYITERGANQVVMGER 537 (558)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEE-C---CHHHHHHHHHCCCCEEECCHH
T ss_conf 98899999999999878698699997-9---899999999779998989378
No 430
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.32 E-value=50 Score=13.14 Aligned_cols=115 Identities=20% Similarity=0.231 Sum_probs=67.7
Q ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 99999887621368832410256999999987415760697513437777320588889899999999999879855770
Q gi|254780485|r 123 SIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCG 202 (328)
Q Consensus 123 ~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg 202 (328)
+.-.+.|+.+++.++.+.+-.|.-..-.-+--++.|++.|. ....++|..+.++..++.|-++
T Consensus 540 ~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~--------------A~llPedK~~~V~~l~~~g~~V--- 602 (713)
T COG2217 540 PDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVR--------------AELLPEDKAEIVRELQAEGRKV--- 602 (713)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCHHHEE--------------CCCCCHHHHHHHHHHHHCCCEE---
T ss_conf 34999999999879939998599989999999973926235--------------0799188999999999659979---
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCC------CCCHHHHHHHHHHHHHHCCC
Q ss_conf 7866898999999999999740888860205411204874124456------87989999999999996868
Q gi|254780485|r 203 GILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENK------KVDPIEHVRIISVARILMPK 268 (328)
Q Consensus 203 ~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~------~~~~~e~lr~iAi~RL~lP~ 268 (328)
+|+|=|=... -.|..-+. ++.+. .||...... .-+.......+.++|-.+-+
T Consensus 603 amVGDGINDA------PALA~AdV---GIAmG-----~GtDvA~eaADvvL~~~dL~~v~~ai~lSr~t~~~ 660 (713)
T COG2217 603 AMVGDGINDA------PALAAADV---GIAMG-----SGTDVAIEAADVVLMRDDLSAVPEAIDLSRATRRI 660 (713)
T ss_pred EEEECCCHHH------HHHHHCCE---EEEEC-----CCCHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 9982883157------88851784---36536-----86187897589999669888899999999999999
No 431
>PRK09568 DNA primase large subunit; Reviewed
Probab=22.29 E-value=21 Score=15.66 Aligned_cols=18 Identities=11% Similarity=-0.007 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHCCCCE
Q ss_conf 999999999888628985
Q gi|254780485|r 34 DLLFWSHTVHRKNFEPNH 51 (328)
Q Consensus 34 el~~~Aa~~~r~~~~g~~ 51 (328)
.++..|-...++-..|..
T Consensus 36 ~~verA~eRi~~al~g~~ 53 (306)
T PRK09568 36 KYIDQAKERIRKIVKGKE 53 (306)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 799999999999862887
No 432
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=22.24 E-value=50 Score=13.13 Aligned_cols=27 Identities=7% Similarity=0.234 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHC----CC-CCCCEEEECC
Q ss_conf 989999999999987----98-5577078668
Q gi|254780485|r 181 TFEDRLQTLENVRKS----GI-KVCCGGILGL 207 (328)
Q Consensus 181 ~~~~~l~~~~~a~~~----G~-~~~sg~l~G~ 207 (328)
+|++-+++++.||++ |. ++.+++=+.+
T Consensus 49 ~~del~~~ik~~~Ea~~~~g~~Rv~t~ikId~ 80 (100)
T COG0011 49 ELDELMEAVKEAHEAVFEKGAPRVSTVIKIDE 80 (100)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 29999999999999998629964899998666
No 433
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=22.17 E-value=51 Score=13.12 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=10.1
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 9999999998798557707866898
Q gi|254780485|r 185 RLQTLENVRKSGIKVCCGGILGLGE 209 (328)
Q Consensus 185 ~l~~~~~a~~~G~~~~sg~l~G~gE 209 (328)
.++.++...+.|..... +++||-+
T Consensus 163 ~~e~~~il~~~G~d~~r-vvigH~D 186 (293)
T cd00530 163 GLEQLRILEEEGVDPSK-VVIGHLD 186 (293)
T ss_pred CHHHHHHHHHCCCCHHH-EEEECCC
T ss_conf 09999999985989225-7896368
No 434
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=22.11 E-value=51 Score=13.11 Aligned_cols=186 Identities=16% Similarity=0.179 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 999999999964983899730368887442899999887621368832410256-9999999874157606975134377
Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYNHNIDTSE 170 (328)
Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~~~let~~ 170 (328)
.++.+|....+.|.. ++++.. ++....+.+ .++..+...+......-|. +.+-.+.....--..-+.+ .
T Consensus 21 ~ML~eA~~l~~~G~D-VViG~v-EthgR~eT~---~l~~gLe~iP~~~~~y~g~~~~E~Dldail~R~P~vvLV-----D 90 (211)
T pfam02702 21 AMLSEAHELLERGVD-VVIGYV-ETHGRAETA---ALLEGLEVIPRKEIEYRGVTLEEMDLDAILARKPQLVLV-----D 90 (211)
T ss_pred HHHHHHHHHHHCCCC-EEEEEE-CCCCCHHHH---HHHCCCCCCCCEEEEECCEECCCCCHHHHHHCCCCEEEE-----E
T ss_conf 999999999978995-699995-379978999---997687668871253688553507999998539998998-----4
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC
Q ss_conf 77320588889899999999999879855770786689899999999999974088886020541120487412445687
Q gi|254780485|r 171 RFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV 250 (328)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~ 250 (328)
++.+.-.|+..-..|++-++...++||.+-+|+=+=|.|+.-|.++-+--++-- +.||-.+|.....--+-+ .
T Consensus 91 ELAHtN~pgsr~~KR~qDVeeLL~aGIdV~TTlNvQHlESlnd~V~~iTgv~vr----EtVPD~vl~~Adei~lVD---~ 163 (211)
T pfam02702 91 ELAHTNAPGSRHEKRWQDVEELLDAGIDVYTTVNVQHLESLNDVVERITGVRVR----ETVPDSVLDEADEVVLVD---L 163 (211)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCCC----CCCCHHHHHHCCEEEECC---C
T ss_conf 455679998888754774999998799088601477665267899972298547----718889995358279816---9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCEEEE--HHHHHCHHHHHHHHHHCCC
Q ss_conf 9899999999999968687214231--1565165689999980998
Q gi|254780485|r 251 DPIEHVRIISVARILMPKSRLRLAA--GRAMMSDELQALCFFSGAN 294 (328)
Q Consensus 251 ~~~e~lr~iAi~RL~lP~~~i~i~~--~~~~~~~~~~~~~L~~GaN 294 (328)
+|++.++-+.--.++.|+..-.... -+......+++++|..-|+
T Consensus 164 ~Pe~L~~RL~~GkvY~~~~~~~Al~~fF~~~nL~aLRElaLr~~Ad 209 (211)
T pfam02702 164 TPEELIERLKEGKIYAPEKADRALSNFFRKGNLTALRELALRRVAD 209 (211)
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9799999997699778788999998247840799999999999874
No 435
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=22.09 E-value=51 Score=13.11 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 88898999999999998798557707866898
Q gi|254780485|r 178 TTHTFEDRLQTLENVRKSGIKVCCGGILGLGE 209 (328)
Q Consensus 178 ~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gE 209 (328)
...+.+.+.+=.-+|.+=|.+..|-++|+..+
T Consensus 313 ~P~s~e~yyQE~GRAGRDG~~a~c~l~y~~~D 344 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEEECHHH
T ss_conf 99999999998863525898541899856878
No 436
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative; InterPro: IPR010088 This entry represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulphate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation..
Probab=21.97 E-value=47 Score=13.34 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHHHHHH-CCCCCCCEEEECCCCC
Q ss_conf 8898999999999998-7985577078668989
Q gi|254780485|r 179 THTFEDRLQTLENVRK-SGIKVCCGGILGLGEM 210 (328)
Q Consensus 179 ~~~~~~~l~~~~~a~~-~G~~~~sg~l~G~gEt 210 (328)
+.++.+--+.+-.... .| |-.+=.|||-|||
T Consensus 65 GrTP~e~KdFiaEl~~liG-KP~nvaiFGTGeT 96 (145)
T TIGR01754 65 GRTPDEMKDFIAELAVLIG-KPKNVAIFGTGET 96 (145)
T ss_pred CCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCC
T ss_conf 8996668999999999836-9982488658875
No 437
>KOG2368 consensus
Probab=21.72 E-value=52 Score=13.06 Aligned_cols=220 Identities=11% Similarity=0.141 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH---HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEE
Q ss_conf 06857999999999964983899730368887442899---999887621368832410256999999987415760697
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI---IVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~---~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328)
..+.+--++.+....+.|.+.+-- ++.-. ++++.. --|.++.++.. +-+.-..-..+-.-++.--.+|+..+.
T Consensus 36 ~vpt~vKveLI~~Lse~Gl~~vEt-TSFVS--pKWVPQl~D~~ev~k~i~~~-~Gv~yPVLtPNlkGf~~AvaaGa~Eva 111 (316)
T KOG2368 36 IVPTEVKVELIDRLSECGLQVVET-TSFVS--PKWVPQLADHNEVMKGIRKF-PGVSYPVLTPNLKGFEAAVAAGAEEVA 111 (316)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEE-ECCCC--CCCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 577337799999998739724653-03457--43243104468999765228-886564117644658999865861577
Q ss_pred EECCCCHHHHHCCCCCC----CHHHHHHHHHHHHHCCCCCCC--EEEECC-CC---CHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 51343777732058888----989999999999987985577--078668-98---999999999999740888860205
Q gi|254780485|r 164 HNIDTSERFYPHVTTTH----TFEDRLQTLENVRKSGIKVCC--GGILGL-GE---MIDDRIDMLLTLANLSTPPESIPI 233 (328)
Q Consensus 164 ~~let~~~~~~~~~~~~----~~~~~l~~~~~a~~~G~~~~s--g~l~G~-gE---t~eeri~~l~~lr~l~~~~~~v~~ 233 (328)
++ ..+-+.|...--.+ +.....++.+.|++.++++-- ...+|- -| ++.-.++....|.+++-. .+++
T Consensus 112 vF-gaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCy--EiSL 188 (316)
T KOG2368 112 VF-GAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCY--EISL 188 (316)
T ss_pred EE-EHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE--EEEC
T ss_conf 42-12134542214785489999999999999997497500378888658766874889999999999847867--9732
Q ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHH--HHHHHCCC---EEEEC--C--EEE-
Q ss_conf 41120487412445687989999999999996868721423115651656899--99980998---89977--8--665-
Q gi|254780485|r 234 NLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQA--LCFFSGAN---SIFVG--D--TLL- 303 (328)
Q Consensus 234 ~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~--~~L~~GaN---~~~~g--~--~~~- 303 (328)
.-.+ --|||-.-.+.+ +..++.+-...|.. -. -.|.|+-+.. .+|..|++ |-+.| + |--
T Consensus 189 GDTI-GvGTpgtm~~ML--~~Vmk~vPa~~LAV-------H~-HDTYGQALaNiL~slqmGi~vvDSsvaGLGGCPYAkG 257 (316)
T KOG2368 189 GDTI-GVGTPGTMKRML--DAVMKVVPAEKLAV-------HC-HDTYGQALANILVSLQMGIRVVDSSVAGLGGCPYAKG 257 (316)
T ss_pred CCCC-CCCCCHHHHHHH--HHHHHHCCHHHHHH-------HH-HHHHHHHHHHHHHHHHHCCEEHHHHCCCCCCCCCCCC
T ss_conf 6610-468950589999--99987478788410-------42-2017889999999998161113111135679975556
Q ss_pred CCCCCCHHHHHHHHHHCCCCC
Q ss_conf 158889899999999829853
Q gi|254780485|r 304 TAKNPSYNKDTILFNRLGLIP 324 (328)
Q Consensus 304 t~~g~~~~~~~~~i~~~G~~P 324 (328)
.+++...|+.+-|++-+|+.-
T Consensus 258 AsGN~ATEDlvYmL~GlG~~T 278 (316)
T KOG2368 258 ASGNLATEDLVYMLNGLGLHT 278 (316)
T ss_pred CCCCCHHHHHHHHHHCCCCCC
T ss_conf 787731788999971677433
No 438
>PRK08462 biotin carboxylase; Validated
Probab=21.56 E-value=52 Score=13.04 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=4.4
Q ss_pred HHHHHHCCCCC
Q ss_conf 99999879855
Q gi|254780485|r 189 LENVRKSGIKV 199 (328)
Q Consensus 189 ~~~a~~~G~~~ 199 (328)
++.|+.+|+..
T Consensus 262 ~~la~~vgY~g 272 (446)
T PRK08462 262 IKAAKAIGYVG 272 (446)
T ss_pred HHHHHHCCCCC
T ss_conf 99998648365
No 439
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=21.48 E-value=52 Score=13.03 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH
Q ss_conf 899999809988997786651588898999999998
Q gi|254780485|r 284 LQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328)
Q Consensus 284 ~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328)
+...+|+.|++.+++.|-+ .++| +..-+++|+++
T Consensus 187 LarrSLk~GS~vL~vDDFm-kaGG-T~~Gm~~LL~E 220 (269)
T TIGR01743 187 LARRSLKKGSKVLIVDDFM-KAGG-TVKGMIELLKE 220 (269)
T ss_pred HHHHHHHHCCEEEEEECCC-CCCC-CHHHHHHHHHH
T ss_conf 8888886089089995355-5487-02678888876
No 440
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=21.33 E-value=53 Score=13.01 Aligned_cols=179 Identities=17% Similarity=0.241 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHCCCCCCEEE------ECCCCCHH-HHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999988762136883241------02569999-999874157606975134377773205888898999999999998
Q gi|254780485|r 122 LSIIVDMIKGVKSLGLETCM------TLGMLSFE-QAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK 194 (328)
Q Consensus 122 ~~~~~e~i~~i~~~~~~i~~------~~g~~~~~-~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328)
+-++.++.+.++...+.+.. ..|..|-+ ....|++.|++.+.++.---|.+|. .+-+.--+=+..|.+
T Consensus 44 ~~~L~~~~~~~~~~~i~igaQn~~~~~~Ga~TGeiSa~mL~d~G~~yviiGHSERR~~f~-----Et~~~i~~K~~~al~ 118 (251)
T PRK00042 44 FTYLSSVKEALEGSNLKLGAQNVHFEDSGAFTGEISPAMLKELGVKYVIIGHSERRTYFG-----ETDELVNKKVKAALK 118 (251)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHCC-----CCHHHHHHHHHHHHH
T ss_conf 999999999827999679972578777767757560999997599979975588776469-----987999999999998
Q ss_pred CCCCCCCEEEECCCCCHHHHHH--HHHHHHH-----CCCCC-CEE--ECCCEEEC--CCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 7985577078668989999999--9999974-----08888-602--05411204--87412445687989999999999
Q gi|254780485|r 195 SGIKVCCGGILGLGEMIDDRID--MLLTLAN-----LSTPP-ESI--PINLLIPI--PGSKFEENKKVDPIEHVRIISVA 262 (328)
Q Consensus 195 ~G~~~~sg~l~G~gEt~eeri~--~l~~lr~-----l~~~~-~~v--~~~~~~p~--~gt~l~~~~~~~~~e~lr~iAi~ 262 (328)
.|+.. ++=.||+.++|-. +...|++ +.... ..+ .+..+=|. =||. ..+++++.-.++...
T Consensus 119 ~~l~p----I~CIGE~~~~r~~g~~~~~l~~Ql~~~l~~~~~~~~~~iiIAYEPvWAIGTG----~~as~~~i~~~~~~I 190 (251)
T PRK00042 119 HGLTP----ILCVGETLEEREAGKTEEVVARQLEAALAGLGAEDFANLVIAYEPVWAIGTG----KTATPEQAQEVHAFI 190 (251)
T ss_pred CCCEE----EEEECCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHCCCEEEEECCHHHCCCC----CCCCHHHHHHHHHHH
T ss_conf 69928----9993673886546787899999999999668987705359996757750799----999999999999999
Q ss_pred HHHCCCC------CCE-EEEHHHHHCHHHHHHHH-HHCCCEEEECCEEECCCCCCHHHHHHHHHHC
Q ss_conf 9968687------214-23115651656899999-8099889977866515888989999999982
Q gi|254780485|r 263 RILMPKS------RLR-LAAGRAMMSDELQALCF-FSGANSIFVGDTLLTAKNPSYNKDTILFNRL 320 (328)
Q Consensus 263 RL~lP~~------~i~-i~~~~~~~~~~~~~~~L-~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~ 320 (328)
|-.+.+. .++ +=+| ++.++.....+ .-++||.++|+- .-.+++..++|+.+
T Consensus 191 r~~l~~~~~~~~~~i~IlYGG--SVn~~N~~~i~~~~~vDG~LVGgA-----SL~~~~F~~Ii~aa 249 (251)
T PRK00042 191 RKVLAELYAEVAEKVRILYGG--SVKPDNAAELFAQPDIDGALVGGA-----SLKAEDFLAIVKAA 249 (251)
T ss_pred HHHHHHHHHHHCCCCCEEEEC--CCCHHHHHHHHCCCCCCEEEECHH-----HCCHHHHHHHHHHH
T ss_conf 999998605230575388717--789989999966889997985158-----67989999999996
No 441
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.18 E-value=53 Score=12.99 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=75.4
Q ss_pred CCCCEE--EEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEE-ECC---CCCHHHHHHHHHHHH-HCCCCCC
Q ss_conf 576069--751343777732058888989999999999987985577078-668---989999999999997-4088886
Q gi|254780485|r 157 AGLDYY--NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGI-LGL---GEMIDDRIDMLLTLA-NLSTPPE 229 (328)
Q Consensus 157 aG~~~~--~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l-~G~---gEt~eeri~~l~~lr-~l~~~~~ 229 (328)
.|+|.+ .+++.+..+ .....+.-++.+.|++.|+++-.-+. -|- .|..-+.+.|..++. +|+. +
T Consensus 88 lGAdaV~~~v~~Gs~~E-------~~~l~~l~~v~~ea~~~G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGA--D 158 (235)
T cd00958 88 LGADAVGVTVYVGSEEE-------REMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGA--D 158 (235)
T ss_pred CCCCEEEEEEECCCCHH-------HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--C
T ss_conf 55567999986898168-------99999999999999983997899974168765565668999999999999789--9
Q ss_pred EEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHH--HH--CHHHHHHHHHHCCCEEEECCEEECC
Q ss_conf 0205411204874124456879899999999999968687214231156--51--6568999998099889977866515
Q gi|254780485|r 230 SIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRA--MM--SDELQALCFFSGANSIFVGDTLLTA 305 (328)
Q Consensus 230 ~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~--~~--~~~~~~~~L~~GaN~~~~g~~~~t~ 305 (328)
.|-. +.+ .+.+.+.++++.+. +.+-+++|=- +. .-+....++.+||.|+.+|=|+-..
T Consensus 159 iVKv----~y~---------g~~e~f~~vv~~~~-----vPVviaGG~k~~~~~~~L~~v~~a~~aGa~Gv~~GRNvfQ~ 220 (235)
T cd00958 159 IVKT----KYT---------GDAESFKEVVEGCP-----VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR 220 (235)
T ss_pred EEEE----CCC---------CCHHHHHHHHHHCC-----CCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCC
T ss_conf 8982----399---------99899999997089-----98998089999999999999999997699567636412258
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 88898999999998
Q gi|254780485|r 306 KNPSYNKDTILFNR 319 (328)
Q Consensus 306 ~g~~~~~~~~~i~~ 319 (328)
..+..+.+-|+.
T Consensus 221 --~~p~~~~~al~~ 232 (235)
T cd00958 221 --PDPVAMLRAISA 232 (235)
T ss_pred --CCHHHHHHHHHH
T ss_conf --889999999997
No 442
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=21.09 E-value=53 Score=12.97 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=22.9
Q ss_pred EEEECCEEECCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 899778665158889899999999829853247
Q gi|254780485|r 295 SIFVGDTLLTAKNPSYNKDTILFNRLGLIPDLS 327 (328)
Q Consensus 295 ~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328)
.+..++.+-|....-.+...+.++++|+.|.+.
T Consensus 34 NI~P~~~vfTV~~~~~~ka~~iL~~lg~~p~v~ 66 (67)
T cd04914 34 NVSPEEVIFTVDGEVAEKAVDILEKMGLDPSVR 66 (67)
T ss_pred EECCCCEEEEECHHHHHHHHHHHHHCCCCCEEE
T ss_conf 866774799807788999999999869983750
No 443
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=21.04 E-value=53 Score=12.97 Aligned_cols=10 Identities=20% Similarity=0.647 Sum_probs=4.1
Q ss_pred CCHHHHHHHH
Q ss_conf 6857999999
Q gi|254780485|r 88 INVDQVLKEA 97 (328)
Q Consensus 88 ~~~Eei~~~a 97 (328)
++.+.|++.|
T Consensus 61 ln~~~Ii~~A 70 (449)
T PRK06111 61 LNLEKIIEIA 70 (449)
T ss_pred CCHHHHHHHH
T ss_conf 3999999999
No 444
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=20.96 E-value=53 Score=12.96 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCC------HHHHHHHHCCCC
Q ss_conf 06857999999999964983-89973036888744289999988762136883241025699------999998741576
Q gi|254780485|r 87 LINVDQVLKEAKNAKENGAT-RYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLS------FEQAQILSKAGL 159 (328)
Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~-~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~------~~~~~~Lk~aG~ 159 (328)
+-..|||.+.++..--.|.+ ...|+.-... ....|.+-++.+.+-+.++ +++..++ .++.++|++++-
T Consensus 7 TANv~Ei~~~~e~g~~~GVTTNPsliak~~n--~~f~evl~ei~~~vGd~G~---vsae~~S~dAegMv~Eak~La~~~~ 81 (216)
T TIGR00875 7 TANVEEIKKAAELGILAGVTTNPSLIAKEGN--RSFWEVLKEIQEVVGDEGP---VSAEVISLDAEGMVEEAKELAKLAP 81 (216)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHHCCC--CCHHHHHHHHHHHHCCCCC---EEHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1257999999842454773456334201368--8788999999987458885---5343430417889999999997528
Q ss_pred CEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC
Q ss_conf 06975134377773205888898999999999998798557707866898999999999999740888860205411204
Q gi|254780485|r 160 DYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328)
Q Consensus 160 ~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328)
+-+ =|++=+... |..++.+.+.||+|+.|.+|-- . +-|+.-+ -+..| | .||+-
T Consensus 82 niv-----------vKIP~T~~G---LkAv~~L~~eGI~TnvTlvfsa----~---QaLlAA~-AGA~Y--V--sPfvg- 134 (216)
T TIGR00875 82 NIV-----------VKIPMTSEG---LKAVKILKKEGIKTNVTLVFSA----A---QALLAAK-AGATY--V--SPFVG- 134 (216)
T ss_pred CCE-----------EEECCCHHH---HHHHHHHHHCCCCEEEHHEECH----H---HHHHHHH-CCCCE--E--CCHHH-
T ss_conf 978-----------961478537---9999999857983120102354----5---8999998-18914--2--44011-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEE
Q ss_conf 874124456879899999999999968687214231156516568999998099889
Q gi|254780485|r 240 PGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSI 296 (328)
Q Consensus 240 ~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~ 296 (328)
++.+...-.-+-.--+.-++..+-+++.|..++-| .|.-.--+++.||+++
T Consensus 135 ---RlDdigg~G~~li~e~~~i~~~h~~~t~vi~AS~r---hP~hvle~al~Ga~~~ 185 (216)
T TIGR00875 135 ---RLDDIGGDGLKLIEEVKTIFENHALDTEVIAASVR---HPRHVLEAALIGADIA 185 (216)
T ss_pred ---HHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC---CHHHHHHHHHHCCCEE
T ss_conf ---01312775057899999999730876426654023---7178999997065544
No 445
>PRK13116 consensus
Probab=20.95 E-value=53 Score=12.95 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC-----------------CHHHHHHHHHHHCCCCC---CEEE---EC-C
Q ss_conf 85799999999996498389973036888744-----------------28999998876213688---3241---02-5
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKER-----------------DLSIIVDMIKGVKSLGL---ETCM---TL-G 144 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~-----------------~~~~~~e~i~~i~~~~~---~i~~---~~-g 144 (328)
+.|.-++.++.+.+.|+.-+-++ -...++.- .++.++++++.+++... .+.+ |+ .
T Consensus 29 ~~~~s~~~l~~l~~~GaDiiElG-iPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~~~~v~~ir~~~~~~PivlM~Y~N~i~ 107 (278)
T PRK13116 29 SPEEAFQIISTAIEAGADALELG-VPFSDPVADGPTVAESHLRALDGGATVDSALEQIKRVRAAYPEVPIGMLIYGNVPF 107 (278)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf 98999999999996699999979-99888566689999999999976986789999999840358987689980572887
Q ss_pred -CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf -6999999987415760697513437777320588889899999999999879855770786689899999999999974
Q gi|254780485|r 145 -MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLAN 223 (328)
Q Consensus 145 -~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~ 223 (328)
.--+.-+++++++|+|.+++ |.-.+++.-+..+.+.+.|+..- .++- .-|.++|+..+....+
T Consensus 108 ~~G~e~F~~~~~~aGvdGlIi-------------pDLP~eE~~~~~~~~~~~~i~~I--~l~~-ptt~~~ri~~I~~~s~ 171 (278)
T PRK13116 108 TRGLDRFYQEFAEAGADSILL-------------PDVPVREGAPFSAAAAAAGIDPI--YIAP-ANASEKTLEGVSAASK 171 (278)
T ss_pred HCCHHHHHHHHHHCCCCEEEE-------------CCCCHHHHHHHHHHHHHCCCCEE--EEEC-CCCCHHHHHHHHHHCC
T ss_conf 727999999997769758994-------------69997888999999986576669--9937-9995999999997189
Q ss_pred CCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE
Q ss_conf 08888602054112048741244568798999999999999686872142311565165689999980998899778665
Q gi|254780485|r 224 LSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303 (328)
Q Consensus 224 l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~ 303 (328)
.++ ..+...|+.-.. .....+..-..+.-.|=.- .+++..|-.--.++.....+..+||++++|.-++
T Consensus 172 -----GFi---Y~VS~~GvTG~~-~~~~~~~l~~~i~~ik~~t---~~Pv~vGFGIs~~e~v~~~~~~~aDGVIVGSAiV 239 (278)
T PRK13116 172 -----GYI---YAISRDGVTGTE-RESSTDGLSAVVDNIKKFD---GAPILLGFGISSPQHVADAIAAGASGAITGSAIT 239 (278)
T ss_pred -----CEE---EEEECCCCCCCC-CCCCHHHHHHHHHHHHHCC---CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf -----739---998635222688-6666789999999998457---9987998167989999999866899999877999
No 446
>PRK10329 glutaredoxin-like protein; Provisional
Probab=20.93 E-value=34 Score=14.24 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 83423212433547--775641000685799999999996498389973036
Q gi|254780485|r 65 CPENCGYCNQSVHN--KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW 114 (328)
Q Consensus 65 C~~~C~fCaf~~~~--~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~ 114 (328)
=.++|..|-..++. +.+ ..|...+.++--+..+..++.|.+.+=.+..+
T Consensus 7 Tkp~C~qC~aTKr~L~~~g-I~y~~vdi~~dpea~~~vk~~G~~q~PVV~~~ 57 (81)
T PRK10329 7 TRNDCVQCHATKRAMESRG-FDFEMINVDRVPEAADTLRAQGFRQLPVVIAG 57 (81)
T ss_pred CCCCCCCHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHCCCCCCCEEEEC
T ss_conf 6999824798999999879-94299858999999999997698559989969
No 447
>pfam06906 DUF1272 Protein of unknown function (DUF1272). This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.91 E-value=25 Score=15.20 Aligned_cols=11 Identities=27% Similarity=0.911 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC
Q ss_conf 86834232124
Q gi|254780485|r 63 GGCPENCGYCN 73 (328)
Q Consensus 63 N~C~~~C~fCa 73 (328)
-+|+..|.||+
T Consensus 23 ~ICsfECTFC~ 33 (57)
T pfam06906 23 RICSFECTFCA 33 (57)
T ss_pred EEEEEECEECH
T ss_conf 78878561267
No 448
>KOG1122 consensus
Probab=20.80 E-value=54 Score=12.93 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=16.8
Q ss_pred CCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 0888860205411204874124456879899999999999968
Q gi|254780485|r 224 LSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILM 266 (328)
Q Consensus 224 l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~l 266 (328)
||.-+.++++..+-|+||-..-+.-.+..- ||..|+.||-
T Consensus 225 LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGG---KTt~IAalMk 264 (460)
T KOG1122 225 LQNASSFLPVMALDPQPGERILDMCAAPGG---KTTHIAALMK 264 (460)
T ss_pred ECCCCCCCEEEECCCCCCCEECCHHCCCCC---HHHHHHHHHC
T ss_conf 226762352452079988711212107995---0778999872
No 449
>PRK09206 pyruvate kinase; Provisional
Probab=20.69 E-value=54 Score=12.92 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=17.8
Q ss_pred HHHHHHHHCCCCC-CCE-EEECCCC----CHHHHHHHHHHHHH
Q ss_conf 9999999879855-770-7866898----99999999999974
Q gi|254780485|r 187 QTLENVRKSGIKV-CCG-GILGLGE----MIDDRIDMLLTLAN 223 (328)
Q Consensus 187 ~~~~~a~~~G~~~-~sg-~l~G~gE----t~eeri~~l~~lr~ 223 (328)
++++.+.++|-++ ++| ||=-+.+ |+.|.-|..-.+.+
T Consensus 262 ~II~~c~~~gKPvivATqmLeSMi~~p~PTRAEvsDVaNAV~d 304 (470)
T PRK09206 262 MMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILD 304 (470)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999739988999377787448999865768789999984
No 450
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.67 E-value=54 Score=12.92 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=61.0
Q ss_pred HHHHHHHHHHCCCEEEEEECCC------CCCCC------CCHHHHHHHHHHHCCCCCCEEEECCCCCHH-HHHHHHCCCC
Q ss_conf 9999999996498389973036------88874------428999998876213688324102569999-9998741576
Q gi|254780485|r 93 VLKEAKNAKENGATRYCMGAAW------REPKE------RDLSIIVDMIKGVKSLGLETCMTLGMLSFE-QAQILSKAGL 159 (328)
Q Consensus 93 i~~~a~~~~~~G~~~~~l~~~~------~~~~~------~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~-~~~~Lk~aG~ 159 (328)
....++.+++.|...+.+-.-. .+..+ ..+|.+.++++.-+.. .+.++.|-.+.. -...|.++|+
T Consensus 576 ~v~a~~alk~~G~~~imIN~NPETVSTD~d~sDrLYFEplt~E~V~~I~~~E~p~--gvi~qfGGQt~~nla~~L~~~g~ 653 (1063)
T PRK05294 576 CVHAALALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPK--GVIVQFGGQTPLKLAKALEAAGV 653 (1063)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCC--EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999996598158953781111156566761454368899999999975898--79997388367899999998799
Q ss_pred CEEEEECCC-----CHHHHHCCC--------CCCCHHHHHHHHHHHHHCCCCCCC-------EEEECCCCCHHHHHHHHH
Q ss_conf 069751343-----777732058--------888989999999999987985577-------078668989999999999
Q gi|254780485|r 160 DYYNHNIDT-----SERFYPHVT--------TTHTFEDRLQTLENVRKSGIKVCC-------GGILGLGEMIDDRIDMLL 219 (328)
Q Consensus 160 ~~~~~~let-----~~~~~~~~~--------~~~~~~~~l~~~~~a~~~G~~~~s-------g~l~G~gEt~eeri~~l~ 219 (328)
.-.....++ .+..|.+.. +.......-++.+.|.+.|+|+-. |--.+...+.+|..+.+.
T Consensus 654 ~ilGts~~~Id~aEDR~~F~~~l~~l~i~qp~~~~a~s~~ea~~~a~~iGyPvlvRPSyVLGG~~M~iv~~~~eL~~yl~ 733 (1063)
T PRK05294 654 PILGTSPDAIDLAEDRERFQKLLEKLGIKQPPNGTATSVEEALEIAEEIGYPVLVRPSYVLGGRAMEIVYDEEELERYMR 733 (1063)
T ss_pred CEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHHHH
T ss_conf 47778878878787588899999865999999707668999999998649866843431025771478569999999999
Q ss_pred HHH
Q ss_conf 997
Q gi|254780485|r 220 TLA 222 (328)
Q Consensus 220 ~lr 222 (328)
..-
T Consensus 734 ~a~ 736 (1063)
T PRK05294 734 EAV 736 (1063)
T ss_pred HHH
T ss_conf 998
No 451
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=20.64 E-value=54 Score=12.91 Aligned_cols=177 Identities=20% Similarity=0.191 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE--EC
Q ss_conf 8579999999999649838997303688874428999998876213688324102569999999874157606975--13
Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNH--NI 166 (328)
Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~--~l 166 (328)
..|+.+ +.+.+.|..-+.++++.. ...++..+..++... .+.+..-+ .+..++. -++|.+.. -+
T Consensus 20 ~~~~~~---~~~~~sgtDaI~VGGS~~---~~~~d~~v~~ik~~~--~lPviLfP--g~~~~vs----~~aDailf~sll 85 (231)
T pfam01884 20 NPEEII---EIVAESGTDAIMIGGSTG---GVTLDNVVRLIKKVY--GLPIILFP--GNPSGVS----RYADAIFFMSLL 85 (231)
T ss_pred CCHHHH---HHHHHCCCCEEEECCCCC---CCCHHHHHHHHHHHC--CCCEEEEC--CCHHHCC----CCCCEEEEEEEE
T ss_conf 969999---999974999999889888---856899999999853--99989956--9867658----677846656410
Q ss_pred CC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC--CCEEEECCCC-------------CHHHHHHHHHHHHHCCCCCCE
Q ss_conf 43-7777320588889899999999999879855--7707866898-------------999999999999740888860
Q gi|254780485|r 167 DT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKV--CCGGILGLGE-------------MIDDRIDMLLTLANLSTPPES 230 (328)
Q Consensus 167 et-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~--~sg~l~G~gE-------------t~eeri~~l~~lr~l~~~~~~ 230 (328)
.+ .|... .....+.....++.|+.+ +.-++++.|- +.++.+.......++ -+
T Consensus 86 Ns~np~~l--------ig~qv~aa~~~~~~~~e~ip~gYivi~~g~~v~~vs~a~~i~~~~~~iaa~~alA~~~----~g 153 (231)
T pfam01884 86 NSANPDWI--------VGAHALGAQTVKKIGEEIIPMGYIVVEPDSKVGWVGEARPIPRNKPDIAAYYALAAKL----LG 153 (231)
T ss_pred CCCCCHHH--------HHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEECCEECCCCCHHHHHHHHHHHHH----CC
T ss_conf 48990567--------6279988998765050053036788759971366436623799959999999999997----09
Q ss_pred EECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEE
Q ss_conf 205411204874124456879899999999999968687214231156516568999998099889977866
Q gi|254780485|r 231 IPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTL 302 (328)
Q Consensus 231 v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328)
+++..+-.-.|++- +.+ .+ ++++.|-. ++..+-..+|-- .++....++.+|||.+++|+-+
T Consensus 154 ~~~iYLEaGSGa~~----~vp-~~---vi~~~~~~-~~~~LivGGGIr--s~e~A~~~~~aGAD~IVvGn~i 214 (231)
T pfam01884 154 MRIFYLEAGSGAPG----PVP-EE---VIAVKKVL-DDARLIVGGGIK--SGEKAKEMARAGADVIVTGNVI 214 (231)
T ss_pred CCEEEEECCCCCCC----CCC-HH---HHHHHHCC-CCCCEEEECCCC--CHHHHHHHHHCCCCEEEECCCE
T ss_conf 81899975899999----989-99---99999646-897689969979--9999999997799999979714
No 452
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=20.53 E-value=55 Score=12.90 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECC
Q ss_conf 8798999999999999686872142311565165689999980998899778
Q gi|254780485|r 249 KVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD 300 (328)
Q Consensus 249 ~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~ 300 (328)
..++++.-+.+...+-..|+..+-.|+| +..+.-..--..|+|.+++|-
T Consensus 217 nmsp~~l~~av~~~~~~~~~~~lEaSGG---I~~~ni~~yA~tGVD~i~tsa 265 (284)
T PRK06096 217 KFSPQQATEIAQIAPSLAPHCTLALTGG---INLTTLKNYLDCGIRLFITSA 265 (284)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECC---CCHHHHHHHHHCCCCEEEECC
T ss_conf 9899999999999872179779999899---999999999980999998282
No 453
>PRK09875 putative hydrolase; Provisional
Probab=20.53 E-value=55 Score=12.90 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=6.3
Q ss_pred CHHHHHHHHCCCCC
Q ss_conf 99999987415760
Q gi|254780485|r 147 SFEQAQILSKAGLD 160 (328)
Q Consensus 147 ~~~~~~~Lk~aG~~ 160 (328)
..+++..|++.|++
T Consensus 165 g~e~l~il~e~Gvd 178 (292)
T PRK09875 165 GLEQLALLQAHGVD 178 (292)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 79999999984989
No 454
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=20.51 E-value=55 Score=12.89 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHCCC-CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 189999999998886289-8569998645307868342321243354777564100068579999999999649838997
Q gi|254780485|r 32 FNDLLFWSHTVHRKNFEP-NHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCM 110 (328)
Q Consensus 32 ~~el~~~Aa~~~r~~~~g-~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l 110 (328)
+..|..+-|...+++.+. +.+.=-+++.. |+ .-..|...+.|++++-++++++.|+..|.|
T Consensus 267 l~~lsq~y~~~v~~~i~~~~~~~kprPi~~-----------ns-------Wea~Yfd~t~e~ile~vk~akk~gvE~Fvl 328 (687)
T COG3345 267 LNGLSQKYAELVRMEIVPRPRVKKPRPIGW-----------NS-------WEAYYFDFTEEEILENVKEAKKFGVELFVL 328 (687)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCEE-----------EC-------EEEEEECCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf 626899999999852586223689986455-----------21-------131311078999999999886368279997
Q ss_pred ECCCCC---CCC-----------CCHHHHHHHHHHHCCCCCC--EEEECCCCCHH
Q ss_conf 303688---874-----------4289999988762136883--24102569999
Q gi|254780485|r 111 GAAWRE---PKE-----------RDLSIIVDMIKGVKSLGLE--TCMTLGMLSFE 149 (328)
Q Consensus 111 ~~~~~~---~~~-----------~~~~~~~e~i~~i~~~~~~--i~~~~g~~~~~ 149 (328)
--|+.. +.. +...-+.++++.|.+.++. |.+.+...+++
T Consensus 329 DDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGIWlePemvs~d 383 (687)
T COG3345 329 DDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGIWLEPEMVSED 383 (687)
T ss_pred CCCCCCCCCCCHHHHHCEECCHHHCCCCHHHHHHHHHHCCCCCCEEECCHHCCCC
T ss_conf 3500156676312332114336435520899999999728764055062120220
No 455
>KOG3333 consensus
Probab=20.46 E-value=55 Score=12.89 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=7.3
Q ss_pred CCC-CCCCCCCCCC
Q ss_conf 683-4232124335
Q gi|254780485|r 64 GCP-ENCGYCNQSV 76 (328)
Q Consensus 64 ~C~-~~C~fCaf~~ 76 (328)
+|. -.|+|-+.+.
T Consensus 3 ~~~~p~~~~~~l~~ 16 (188)
T KOG3333 3 VCRNPGCRFAALST 16 (188)
T ss_pred CCCCCCCCHHHHHC
T ss_conf 45688620545430
No 456
>TIGR00014 arsC arsenate reductase; InterPro: IPR006659 This entry describes a distinct clade, including ArsC itself, of the broader family of ArsC and related proteins. This clade is almost completely restricted to the proteobacteria. An anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773 . When expressed in Escherichia coli this ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. The pump is composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate. ; GO: 0008794 arsenate reductase (glutaredoxin) activity, 0006118 electron transport.
Probab=20.44 E-value=55 Score=12.88 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=11.3
Q ss_pred CHHHHHHHHCCCCC-EEEEECCC
Q ss_conf 99999987415760-69751343
Q gi|254780485|r 147 SFEQAQILSKAGLD-YYNHNIDT 168 (328)
Q Consensus 147 ~~~~~~~Lk~aG~~-~~~~~let 168 (328)
+.+.++.|.++|+. .+--+|++
T Consensus 12 SR~tLalL~dkgi~P~vV~YL~~ 34 (114)
T TIGR00014 12 SRQTLALLEDKGIEPEVVKYLKN 34 (114)
T ss_pred HHHHHHHHHHCCCCCEEEECCCC
T ss_conf 68999999856999547414589
No 457
>KOG0564 consensus
Probab=20.20 E-value=55 Score=12.85 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--------CCHHHHHHHHHHHCCC-CCCEEEEC----------C----
Q ss_conf 68579999999999649838997303688874--------4289999988762136-88324102----------5----
Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKE--------RDLSIIVDMIKGVKSL-GLETCMTL----------G---- 144 (328)
Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~--------~~~~~~~e~i~~i~~~-~~~i~~~~----------g---- 144 (328)
+..+.|....+.++..|++.+.-. -|.+|.. ..+.|-.+++|.|++. +-..++.+ .
T Consensus 89 ~~~~~Id~aLe~a~~~GirNILAL-RGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~~~ 167 (590)
T KOG0564 89 MPKEMIDKALEQAKALGIRNILAL-RGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSHDY 167 (590)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCH
T ss_conf 618999999999998072242442-5899998653200357712579999999998288478875037877767765441
Q ss_pred CCCHHHHHHHHCCCCCEEE
Q ss_conf 6999999987415760697
Q gi|254780485|r 145 MLSFEQAQILSKAGLDYYN 163 (328)
Q Consensus 145 ~~~~~~~~~Lk~aG~~~~~ 163 (328)
..+-..+++-.+||+|-+.
T Consensus 168 ~~Dl~yLk~KvdaGaDFIi 186 (590)
T KOG0564 168 LADLPYLKEKVDAGADFII 186 (590)
T ss_pred HHHHHHHHHHHCCCCHHHH
T ss_conf 2216899985215421435
No 458
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297 This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=20.13 E-value=56 Score=12.84 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=15.6
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 8645307868342321243354777
Q gi|254780485|r 56 KLLNIKTGGCPENCGYCNQSVHNKS 80 (328)
Q Consensus 56 ~~in~~TN~C~~~C~fCaf~~~~~~ 80 (328)
+++.++.+.|+ .|+||..|--+.+
T Consensus 89 G~V~Vd~~~Ci-GC~yC~waCPYgA 112 (162)
T TIGR02951 89 GLVLVDQDKCI-GCRYCVWACPYGA 112 (162)
T ss_pred CEEEEECCCCC-CCCCCCCCCCCCC
T ss_conf 63787088653-4344564587887
Done!