HHsearch alignment for GI: 254780485 and conserved domain: smart00729

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.82  E-value=1.1e-18  Score=144.93  Aligned_cols=186  Identities=26%  Similarity=0.425  Sum_probs=140.9

Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-----EEECCCCCCC-CCCHHHHHHHHH
Q ss_conf             6453078683423212433547775641000685799999999996498389-----9730368887-442899999887
Q gi|254780485|r   57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRY-----CMGAAWREPK-ERDLSIIVDMIK  130 (328)
Q Consensus        57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~-----~l~~~~~~~~-~~~~~~~~e~i~  130 (328)
T Consensus         4 ~~~~-sRGC~~~C~fC~~~~~~~----~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   78 (216)
T smart00729        4 LYII-TRGCPRRCTFCSFPSARG----KLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIR   78 (216)
T ss_pred             EEEE-ECCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999-878198484298175889----64575999999999999970897653001100246898889999999999999


Q ss_pred             HHCCC----CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCCEEE
Q ss_conf             62136----883241025699999998741576069751343-7777320588889899999999999879-85577078
Q gi|254780485|r  131 GVKSL----GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG-IKVCCGGI  204 (328)
Q Consensus       131 ~i~~~----~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G-~~~~sg~l  204 (328)
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~~~i  158 (216)
T smart00729       79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI  158 (216)
T ss_pred             HHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             85143562699997060215899999999849986666735507899987179999999999999999858936877578


Q ss_pred             ECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf             668-989999999999997408888602054112048741244568
Q gi|254780485|r  205 LGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK  249 (328)
Q Consensus       205 ~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~  249 (328)
T Consensus       159 ~GlP~et~e~~~~t~~~~~~~~~--~~i~~~~~~p~pgT~~~~~~~  202 (216)
T smart00729      159 VGLPGETEEDFEETLKLLKELGP--DRVSIFPLSPRPGTPLAKLYK  202 (216)
T ss_pred             ECCCCCCHHHHHHHHHHHHHCCC--CEEEEECCEECCCCHHHHCCC
T ss_conf             67999999999999999994691--989987487569984665016