HHsearch alignment for GI: 254780485 and conserved domain: smart00729
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.82 E-value=1.1e-18 Score=144.93 Aligned_cols=186 Identities=26% Similarity=0.425 Sum_probs=140.9
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-----EEECCCCCCC-CCCHHHHHHHHH
Q ss_conf 6453078683423212433547775641000685799999999996498389-----9730368887-442899999887
Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRY-----CMGAAWREPK-ERDLSIIVDMIK 130 (328)
Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~-----~l~~~~~~~~-~~~~~~~~e~i~ 130 (328)
T Consensus 4 ~~~~-sRGC~~~C~fC~~~~~~~----~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 78 (216)
T smart00729 4 LYII-TRGCPRRCTFCSFPSARG----KLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIR 78 (216)
T ss_pred EEEE-ECCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999-878198484298175889----64575999999999999970897653001100246898889999999999999
Q ss_pred HHCCC----CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCCEEE
Q ss_conf 62136----883241025699999998741576069751343-7777320588889899999999999879-85577078
Q gi|254780485|r 131 GVKSL----GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG-IKVCCGGI 204 (328)
Q Consensus 131 ~i~~~----~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G-~~~~sg~l 204 (328)
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~~~i 158 (216)
T smart00729 79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI 158 (216)
T ss_pred HHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 85143562699997060215899999999849986666735507899987179999999999999999858936877578
Q ss_pred ECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC
Q ss_conf 668-989999999999997408888602054112048741244568
Q gi|254780485|r 205 LGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328)
Q Consensus 205 ~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328)
T Consensus 159 ~GlP~et~e~~~~t~~~~~~~~~--~~i~~~~~~p~pgT~~~~~~~ 202 (216)
T smart00729 159 VGLPGETEEDFEETLKLLKELGP--DRVSIFPLSPRPGTPLAKLYK 202 (216)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCC--CEEEEECCEECCCCHHHHCCC
T ss_conf 67999999999999999994691--989987487569984665016