RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780485|ref|YP_003064898.1| biotin synthase [Candidatus
Liberibacter asiaticus str. psy62]
(328 letters)
>gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional.
Length = 345
Score = 420 bits (1082), Expect = e-118
Identities = 167/306 (54%), Positives = 226/306 (73%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
WT +V +++ P +LLF + VHR++F+P +Q+S LL+IKTG CPE+C YC QS
Sbjct: 7 WTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 66
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138
K+ L+A +L+ V+QVL+ A+ AK G+TR+CMGAAW+ P ERD+ + M++GVK++GLE
Sbjct: 67 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 126
Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198
TCMTLG LS QAQ L+ AGLDYYNHN+DTS FY ++ TT T+++RL TLE VR +GIK
Sbjct: 127 TCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 186
Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258
VC GGI+GLGE + DR +LL LANL TPPES+PIN+L+ + G+ +N VD + +R
Sbjct: 187 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 246
Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318
I+VARI+MP S +RL+AGR M+++ QA+CF +GANSIF G LLT NP +KD LF
Sbjct: 247 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 306
Query: 319 RLGLIP 324
+LGL P
Sbjct: 307 KLGLNP 312
>gnl|CDD|178013 PLN02389, PLN02389, biotin synthase.
Length = 379
Score = 399 bits (1026), Expect = e-112
Identities = 156/308 (50%), Positives = 213/308 (69%), Gaps = 2/308 (0%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
WT E+ ++Y+ P DLLF VHR +P +Q LL+IKTGGC E+C YC QS
Sbjct: 47 WTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRY 106
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP--KERDLSIIVDMIKGVKSLG 136
+ +KA KL++ D VL+ AK AKE G+TR+CMGAAWR+ ++ + + I++ +K ++ +G
Sbjct: 107 DTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMG 166
Query: 137 LETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSG 196
+E C TLGML EQA L +AGL YNHN+DTS +YP+V TT +++DRL+TLE VR++G
Sbjct: 167 MEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAG 226
Query: 197 IKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHV 256
I VC GGI+GLGE +DR+ +L TLA L PES+PIN L+ + G+ E+ K V+ E V
Sbjct: 227 ISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMV 286
Query: 257 RIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTIL 316
R+I+ ARI+MPK+ +RL+AGR S QALCF +GANSIF GD LLT N ++ D +
Sbjct: 287 RMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAM 346
Query: 317 FNRLGLIP 324
F LGLIP
Sbjct: 347 FKELGLIP 354
>gnl|CDD|161876 TIGR00433, bioB, biotin synthetase. Catalyzes the last step of the
biotin biosynthesis pathway.
Length = 296
Score = 389 bits (1000), Expect = e-109
Identities = 151/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 27 IYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASK 86
++ P DLL+ + +HRK+F+P +QL ++NIK+GGCPE+C YC+QS +K+ L +
Sbjct: 1 LFETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIER 60
Query: 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVD-MIKGVKSLGLETCMTLGM 145
L VD+VL+EA+ AK GATR+C+ A+ R PK+R+ V+ M++ V+ +GL+TC TLG+
Sbjct: 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGL 120
Query: 146 LSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL 205
L EQA+ L AGLDYYNHN+DTS+ FY ++ +THT++DR+ TLEN +K+G+KVC GGI
Sbjct: 121 LDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIF 180
Query: 206 GLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARIL 265
GLGE ++DRI + L LANL PPES+PIN L+ I G+ +NK++ + ++ I++ARI+
Sbjct: 181 GLGETVEDRIGLALALANL--PPESVPINFLVKIKGTPLADNKELSADDALKTIALARII 238
Query: 266 MPKSRLRLAAGR-AMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322
MPK+ +RLA GR M + QA+CF +GANSIFVGD L T NP +KD L +LGL
Sbjct: 239 MPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNPEEDKDKKLLAKLGL 296
>gnl|CDD|180492 PRK06256, PRK06256, biotin synthase; Validated.
Length = 336
Score = 304 bits (781), Expect = 2e-83
Identities = 117/314 (37%), Positives = 194/314 (61%), Gaps = 11/314 (3%)
Query: 20 TSKEVFQIYNMP---FNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSV 76
T +E + +P +LL ++ V RK+F ++L+ ++N K+G CPE+CGYC+QS
Sbjct: 21 TKEEALALLEIPDDDLLELLAAAYEV-RKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSA 79
Query: 77 HNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-L 135
+ + + ++++++++ AK A E GA +C+ A+ R P +++ +V+ +K +K
Sbjct: 80 GSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEET 139
Query: 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS 195
LE C LG+L+ EQA+ L +AG+D YNHN++TS ++P+V TTHT+EDR+ T E V+ +
Sbjct: 140 DLEICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAA 199
Query: 196 GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEH 255
GI+ C GGI+G+GE ++DR++ L L +SIPIN L PIPG+ E + ++ P+E
Sbjct: 200 GIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLEC 257
Query: 256 VRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSY-NKDT 314
++ I++ R++ P +R+A GR + LQ L GANS+ VG+ L T P+ + D
Sbjct: 258 LKTIAIFRLINPDKEIRIAGGREVNLRSLQPL-GLGGANSVIVGNYLTTVGQPATADLDM 316
Query: 315 ILFNRLGLIPDLSA 328
I LG +L A
Sbjct: 317 I--EDLGFEIELDA 328
>gnl|CDD|181453 PRK08508, PRK08508, biotin synthase; Provisional.
Length = 279
Score = 220 bits (562), Expect = 4e-58
Identities = 109/275 (39%), Positives = 159/275 (57%), Gaps = 6/275 (2%)
Query: 50 NHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYC 109
I L + NI +G C E+C YC QS H K+ +K K +++Q+++EAK AK NGA +C
Sbjct: 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFC 61
Query: 110 MGAAWREPKERDLSIIVDMIKGVKS--LGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167
+ + R ++ L + + K VK GL G S EQ + L KAG+ YNHN++
Sbjct: 62 LVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLE 121
Query: 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP 227
TS+ F+P + TTHT+E+R QT EN +++G+ +C GGI GLGE +DRI L +LA+LS
Sbjct: 122 TSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLS-- 179
Query: 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQAL 287
P S PIN IP P + + E + I+ +A+ +P +RL +A GR ++ E Q
Sbjct: 180 PHSTPINFFIPNPALPLKAP-TLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238
Query: 288 CFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322
F +GAN+I +GD LT K + KD LG
Sbjct: 239 IFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGF 272
>gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 127 bits (320), Expect = 4e-30
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 17/219 (7%)
Query: 55 SKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNA--KENGATRYCMGA 112
L I T GCP C +C+ + KL++ L + + ++ KE +G
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSA-RGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGG 59
Query: 113 AW-----REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167
E E L I +++ + + G L+ E + L +AG++ + +
Sbjct: 60 GTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQ 119
Query: 168 T-SERFYPHVTTTHTFEDRLQTLENVRKSG-IKVCCGGILGL-GEMIDDRIDMLLTLANL 224
+ S+ + HT ED L+ +E +R++G IKV I+GL GE +D + L L L
Sbjct: 120 SGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKEL 179
Query: 225 STPPESIPINLLIPIPGSKFEENKK----VDPIEHVRII 259
P+ + I L P PG+ + K D E + ++
Sbjct: 180 --GPDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERLELL 216
>gnl|CDD|129109 smart00876, BATS, Biotin and Thiamin Synthesis associated domain.
Biotin synthase (BioB), , catalyses the last step of the
biotin biosynthetic pathway. The reaction consists in
the introduction of a sulphur atom into dethiobiotin.
BioB functions as a homodimer PUBMED:12482614. Thiamin
synthesis if a complex process involving at least six
gene products (ThiFSGH, ThiI and ThiJ). Two of the
proteins required for the biosynthesis of the thiazole
moiety of thiamine (vitamin B(1)) are ThiG and ThiH
(this entry) and form a heterodimerPUBMED:12650933. Both
of these reactions are thought of involve the binding of
co-factors, and both function as dimers PUBMED:12482614,
PUBMED:12650933. This domain therefore may be involved
in co-factor binding or dimerisation.
Length = 94
Score = 121 bits (305), Expect = 3e-28
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 232 PINLLIPIPGSKFEENKK-VDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFF 290
PIN L PI G+ E+ V P E +R I+ AR+ +P + +RL+ GR + +LQALCF
Sbjct: 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFS 60
Query: 291 SGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIP 324
+GANSIF GD LT P D + +LGL P
Sbjct: 61 AGANSIFGGDKYLTTSGPRSADDVAMLEKLGLEP 94
>gnl|CDD|148534 pfam06968, BATS, Biotin and Thiamin Synthesis associated domain.
Biotin synthase (BioB), EC:2.8.1.6, catalyses the last
step of the biotin biosynthetic pathway. The reaction
consists in the introduction of a sulphur atom into
dethiobiotin. BioB functions as a homodimer. Thiamin
synthesis if a complex process involving at least six
gene products (ThiFSGH, ThiI and ThiJ). Two of the
proteins required for the biosynthesis of the thiazole
moiety of thiamine (vitamin B(1)) are ThiG and ThiH
(this family) and form a heterodimer. Both of these
reactions are thought of involve the binding of
co-factors, and both function as dimers. This domain
therefore may be involved in co-factor binding or
dimerization (Finn, RD personal observation).
Length = 93
Score = 113 bits (286), Expect = 5e-26
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFS 291
PIN L PI G+ E+ + E ++ I+ R+L+P + +RL+ GR + +LQ L F S
Sbjct: 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMS 60
Query: 292 GANSIFVGDTLLTAKNPSYNKDTILFNRLGLIP 324
GANS FVG L T+ N S ++D + LGL P
Sbjct: 61 GANSTFVGGYLTTSGNRSPDEDIAMLKDLGLEP 93
>gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional.
Length = 323
Score = 54.5 bits (132), Expect = 4e-08
Identities = 56/213 (26%), Positives = 107/213 (50%), Gaps = 21/213 (9%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCM--GAAWREPKERDL 122
C NC YC NK+ ++ +L + +++L+ AK A E G + G E+
Sbjct: 49 CRNNCLYCGLRRDNKN-IERYRL-SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEK-- 104
Query: 123 SIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-----ERFYPHV 176
I D+IK +K L + ++LG S+E+ + +AG D Y +T+ + +P
Sbjct: 105 --IADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPG- 161
Query: 177 TTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINL 235
+FE+R+ L+++++ G +V G ++GL G+ ++D D +L L L + I I
Sbjct: 162 ---MSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGP 216
Query: 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268
IP P + ++ K ++++++ R+L+P
Sbjct: 217 FIPHPDTPLKDEKGGSLELTLKVLALLRLLLPD 249
>gnl|CDD|161907 TIGR00510, lipA, lipoate synthase. The family shows strong
sequence conservation.
Length = 302
Score = 48.3 bits (115), Expect = 3e-06
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 153 ILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGILGLGEM 210
IL A D YNHN++T ER P V T+ L+ LE ++ + G ++GLGE
Sbjct: 161 ILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGET 220
Query: 211 IDDRIDMLLTLAN 223
++ L L +
Sbjct: 221 NEEIKQTLKDLRD 233
>gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family. This
uncharacterized protein family shows significant
similarity to TIGR01211, a longer protein that is a
histone acetyltransferase at its C-terminus and is a
subunit of RNA polymerase II (in yeast). This family
lacks the GNAT acetyltransferase domain.
Length = 302
Score = 43.6 bits (103), Expect = 7e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 180 HTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLS-TPPESIPINLLI 237
H F + ++ RK GIKVC ILGL GE DR +M+ T +S + I I+ L
Sbjct: 160 HDFACYVDAVKRARKRGIKVCSHVILGLPGE---DREEMMETAKIVSLLDVDGIKIHPLH 216
Query: 238 PIPGSKFEE 246
+ G+K +
Sbjct: 217 VVKGTKMAK 225
>gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin
synthase, CofG subunit. This model represents either a
subunit or a domain, depending on whether or not the
genes are fused, of a bifunctional protein that
completes the synthesis of
7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is
the chromophore of coenzyme F(420), involved in
methanogenesis in methanogenic archaea but found in
certain other lineages as well. The chromophore also
occurs as a cofactor in DNA photolyases in
Cyanobacteria.
Length = 322
Score = 43.4 bits (103), Expect = 8e-05
Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 40/233 (17%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT------------RYCMGA 112
C CGYC +L+A+ L++ ++VL+ + G T RY
Sbjct: 14 CRNRCGYCT-FRRPPGELEAA-LLSPEEVLEILRKGAAAGCTEALFTFGEKPEERY--PE 69
Query: 113 AWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY---YNHNI--- 166
A E ++ ++ + L LE G+L ++S+ L N ++
Sbjct: 70 AREWLAEMGYDSTLEYLRELCELALEET---GLLPHTNPGVMSRDELARLKPVNASMGLM 126
Query: 167 --DTSERFYPHVTTTHTF------EDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDML 218
TSER H RL+T+E+ + I G ++G+GE ++R + L
Sbjct: 127 LETTSERLCK--GEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESL 184
Query: 219 LTLANLSTP----PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMP 267
L + L E I N PG+ E + + E +R ++VAR+++P
Sbjct: 185 LAIRELHERYGHIQEVIVQNFR-AKPGTPMENHPEPSLEEMLRTVAVARLILP 236
>gnl|CDD|183830 PRK12928, PRK12928, lipoyl synthase; Provisional.
Length = 290
Score = 43.4 bits (103), Expect = 8e-05
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 149 EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK--SGIKVCCGGILG 206
E+ + A D +NHN++T R V ++ L L ++ I G +LG
Sbjct: 154 ERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLG 213
Query: 207 LGEMIDDRIDMLLTL 221
LGE D+ I+ L L
Sbjct: 214 LGETEDEVIETLRDL 228
>gnl|CDD|181720 PRK09240, thiH, thiamine biosynthesis protein ThiH; Reviewed.
Length = 371
Score = 43.3 bits (103), Expect = 1e-04
Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 62/236 (26%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWRE-------- 116
C +C YC S+ NK K K L + +++ +E K+ G +
Sbjct: 84 CANDCTYCGFSMSNKIKRK--TL-DEEEIEREMAAIKKLG---------FEHILLLTGEH 131
Query: 117 PKERDLSIIVDMIKGVK----SLGLETCMTLGMLSFEQAQILSKAGLDY-------YNHN 165
+ + I + + S+ +E L S E+ L + GLD YN
Sbjct: 132 EAKVGVDYIRRALPIAREYFSSVSIEV-QPL---SEEEYAELVELGLDGVTVYQETYN-- 185
Query: 166 IDTSERFYPHVTTTHT------FEDRLQTLENVRKSGI-KVCCGGILGLGEMIDDRIDML 218
Y H FE RL+T E ++GI K+ G +LGL D R D L
Sbjct: 186 ----PATYAKH---HLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLS---DWRTDAL 235
Query: 219 LTLANLS----TPPES-IPINL--LIPIPGSKFEENKKVDPIEHVRIISVARILMP 267
+T +L ++ I+ L P G E V + V++I R+ +P
Sbjct: 236 MTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLP 290
>gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed.
Length = 336
Score = 43.0 bits (102), Expect = 1e-04
Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 48/237 (20%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT------------RYCMGA 112
C CGYC L++ ++V + + + G T Y
Sbjct: 22 CRNRCGYCTFRRDPGQ----PSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESY--ER 75
Query: 113 AWREPKERDLSIIVDMIKGVKSLGLETCMTL------GMLSFEQAQILSKA----GLDYY 162
+ E S I++ + + L LE L G+L+ E+ + L + GL
Sbjct: 76 IKEQLAEMGYSSILEYLYDLCELALE--EGLLPHTNAGILTREEMEKLKEVNASMGLMLE 133
Query: 163 NHNIDTSERFYPHVTTTH------TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRID 216
TS R + T H E RL+T+EN K I G ++G+GE +DR +
Sbjct: 134 Q----TSPRL---LNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGIGETWEDRAE 186
Query: 217 MLLTLANLSTP----PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKS 269
L +A L E I I P PG E + + E +R++++AR+++P
Sbjct: 187 SLEAIAELHERYGHIQEVI-IQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPD 242
>gnl|CDD|131404 TIGR02351, thiH, thiazole biosynthesis protein ThiH. Members this
protein family are the ThiH protein of thiamine
biosynthesis, a homolog of the BioB protein of biotin
biosynthesis. Genes for the this protein generally are
found in operons with other thiamin biosynthesis genes.
Length = 366
Score = 42.3 bits (100), Expect = 2e-04
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 48/254 (18%)
Query: 39 SHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAK 98
+ + RK F N I L L + + C C YC S+ NK K K +N +++ +E +
Sbjct: 59 AKKLTRKRFG-NTISLFTPLYL-SNYCSNKCVYCGFSMSNKIK---RKKLNEEEIEREIE 113
Query: 99 NAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK----SLGLETCMTLGMLSFEQAQIL 154
K++G + K + I + IK + SL +E + L+ E+ + L
Sbjct: 114 AIKKSGFKEILL-VTGESEKAAGVEYIAEAIKLAREYFSSLAIE----VQPLNEEEYKKL 168
Query: 155 SKAGLDY-------YNHNIDTSERFYPHVTTTHT------FEDRLQTLENVRKSGI-KVC 200
+AGLD YN E+ Y H F RL T E K+G+ K+
Sbjct: 169 VEAGLDGVTVYQETYN------EKKYKKH---HLAGKKKDFRYRLNTPERAAKAGMRKIG 219
Query: 201 CGGILGLGEMIDDRIDMLLTLANL-----STPPESIPINL--LIPIPGSKFEENKKVDPI 253
G +LGL + R D T +L I I++ L P + V
Sbjct: 220 IGALLGLDDW---RTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNG-LKPKVIVTDR 275
Query: 254 EHVRIISVARILMP 267
E V+II R+ P
Sbjct: 276 ELVQIICAYRLFDP 289
>gnl|CDD|180115 PRK05481, PRK05481, lipoyl synthase; Provisional.
Length = 289
Score = 40.8 bits (97), Expect = 5e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 149 EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVR--------KSGIKVC 200
+ + A D +NHN++T R Y V +E L+ L+ + KSG+
Sbjct: 146 DALLTVLDARPDVFNHNLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGL--- 202
Query: 201 CGGILGLGE 209
++GLGE
Sbjct: 203 ---MVGLGE 208
>gnl|CDD|173603 PTZ00413, PTZ00413, lipoate synthase; Provisional.
Length = 398
Score = 37.1 bits (86), Expect = 0.007
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 16/66 (24%)
Query: 154 LSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVR---------KSGIKVCCGG 203
L+ + L Y HNI+ ER P+V ++ L+ LE+V+ KS I
Sbjct: 248 LANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSI------ 301
Query: 204 ILGLGE 209
+LGLGE
Sbjct: 302 MLGLGE 307
>gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin
synthase, CofH subunit. This enzyme, together with
CofG, complete the biosynthesis of
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the
chromophore of coenzyme F420. The chromophore is also
used in cyanobacteria DNA photolyases.
Length = 343
Score = 35.7 bits (83), Expect = 0.015
Identities = 59/292 (20%), Positives = 97/292 (33%), Gaps = 77/292 (26%)
Query: 59 NIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP 117
NI T C CG+C + L++++++ + A A + GAT C+
Sbjct: 42 NINFTNVCYGGCGFCAFRKRKGDA--DAYLLSLEEIAERAAEAWKAGATEVCIQGGIH-- 97
Query: 118 KERDLSIIVDMIKGVKSLGLETCM-------------TLGMLSFEQAQILSKAGLDYYNH 164
+ D +D+++ VK + G+ E + L +AGLD
Sbjct: 98 PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLD---- 153
Query: 165 NIDTSERFYPHVTTTHTF-------------EDRLQTLENVR------KSGIKVCCGGIL 205
+ T D+L T E + K GI +
Sbjct: 154 ------------SMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201
Query: 206 GLGEMIDDRIDMLLTLAN-------------LSTPPESIPINLLIPI-PGSKFEENKKVD 251
G E + +D LL L L + P+ L PG E+ KV
Sbjct: 202 GHVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKV- 260
Query: 252 PIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303
++ARIL+ + A + +L + GAN + G TL+
Sbjct: 261 -------HAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDL--GGTLM 303
>gnl|CDD|129517 TIGR00423, TIGR00423, radical SAM domain protein, CofH subfamily.
This protein family includes the CofH protein of
coenzyme F(420) biosynthesis from Methanocaldococcus
jannaschii, but appears to hit genomes more broadly than
just the subset that make coenzyme F(420), so that
narrower group is being built as a separate family.
Length = 309
Score = 35.1 bits (81), Expect = 0.024
Identities = 53/277 (19%), Positives = 102/277 (36%), Gaps = 62/277 (22%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCM--------GAAWRE 116
C C +C + + K K + +++++++L++ K A GAT C+ + E
Sbjct: 15 CVGKCKFC--AFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYE 72
Query: 117 P-----KERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQA-QILSKAGLDYY-------- 162
K+ + I + + LS E+ + L KAGLD
Sbjct: 73 ELFRAIKQEFPDV---HIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEIL 129
Query: 163 ---------NHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDD 213
+ + + E T H + GI + G E +
Sbjct: 130 DDSVRRKICPNKLSSDEWLEVI-KTAH-------------RLGIPTTATMMFGHVENPEH 175
Query: 214 RIDMLLTLANLSTPPESIPINLLIPI-------PGSKFEENKKVDPIEHVRIISVARILM 266
R++ LL + + ++ IP+ P + E K I+ +++I+++RIL+
Sbjct: 176 RVEHLLRIRKIQE--KTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILL 233
Query: 267 PKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303
R + A + +L + GAN + G TL+
Sbjct: 234 NNIR-NIQASWVKLGLKLAQVALEFGANDL--GGTLM 267
>gnl|CDD|132511 TIGR03471, HpnJ, hopanoid biosynthesis associated radical SAM
protein HpnJ. One of the well-described hopanoid
intermediates is bacteriohopanetetrol. In the conversion
from hopene several reactions must occur in the side
chain for which a radical mechanism might be reasonable.
These include the four (presumably anaerobic)
hydroxylations and a methyl shift.
Length = 472
Score = 34.3 bits (79), Expect = 0.045
Identities = 55/256 (21%), Positives = 92/256 (35%), Gaps = 76/256 (29%)
Query: 27 IYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLN----IKTG-GCPENCGYC--NQSVHNK 79
I +M D L + V++++ + + L + + TG GCP C +C Q+V
Sbjct: 166 IEDM---DALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGH 222
Query: 80 SKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE---------RDLSIIVDMIK 130
S + V++E K A EN + E +E D ++ +
Sbjct: 223 RYRTRS----AESVIEEVKYALEN----------FPEVREFFFDDDTFTDDKPRAEEIAR 268
Query: 131 GVKSLGLE-TCMTLGMLSFEQAQILSKAGL-----------DYYNHNI------DTSERF 172
+ LG+ +C + +E +++ + GL NI + + RF
Sbjct: 269 KLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRF 328
Query: 173 YPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL----GEMIDDRIDMLLTLANLSTPP 228
+ K GIKV ILGL E I ID L P
Sbjct: 329 ----------------TRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELN-----P 367
Query: 229 ESIPINLLIPIPGSKF 244
+I ++L P PG++
Sbjct: 368 HTIQVSLAAPYPGTEL 383
>gnl|CDD|180943 PRK07360, PRK07360, FO synthase subunit 2; Reviewed.
Length = 371
Score = 33.3 bits (77), Expect = 0.091
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 58 LNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCM 110
NI T C +CG+C ++ A L + ++L++A A + GAT C+
Sbjct: 62 RNINFTNICEGHCGFCAFRR-DEGDHGAFWL-TIAEILEKAAEAVKRGATEVCI 113
>gnl|CDD|178048 PLN02428, PLN02428, lipoic acid synthase.
Length = 349
Score = 33.2 bits (76), Expect = 0.094
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 152 QILSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVRKSGIKVCCGG------- 203
+ ++ +GLD + HNI+T ER V ++ L L++ K G
Sbjct: 199 ETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHA-----KESKPGLLTKTSI 253
Query: 204 ILGLGEMIDDRIDMLLTL 221
+LGLGE ++ + + L
Sbjct: 254 MLGLGETDEEVVQTMEDL 271
>gnl|CDD|180499 PRK06267, PRK06267, hypothetical protein; Provisional.
Length = 350
Score = 32.0 bits (73), Expect = 0.21
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 16/80 (20%)
Query: 194 KSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLI-----PIPGSKFEENK 248
K+GI + ILGLGE DD I+ LL L E + ++ + P G+ FE
Sbjct: 168 KTGITI----ILGLGETEDD-IEKLLNLI------EELDLDRITFYSLNPQKGTIFENKP 216
Query: 249 KVDPIEHVRIISVARILMPK 268
V +E++ +S R+ PK
Sbjct: 217 SVTTLEYMNWVSSVRLNFPK 236
>gnl|CDD|131546 TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme. An
iron-sulfur protein with a radical-SAM domain
(pfam04055). A single glycine residue in EC 2.3.1.54,
formate C-acetyltransferase (formate-pyruvate lyase), is
oxidized to the corresponding radical by transfer of H
from its CH2 to AdoMet with concomitant cleavage of the
latter. The reaction requires Fe2+. The first stage is
reduction of the AdoMet to give methionine and the
5'-deoxyadenosin-5-yl radical, which then abstracts a
hydrogen radical from the glycine residue.
Length = 235
Score = 31.6 bits (72), Expect = 0.26
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 16/86 (18%)
Query: 63 GGCPENCGYCNQSVHNKS--KLKASKLINVDQVLKEAKNAKE-----NGATRYCMGAAWR 115
GCP C YC HN LK + ++++KE + K+ G + G
Sbjct: 23 QGCPLRCQYC----HNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLL 78
Query: 116 EPKERDLSIIVDMIKGVKSLGLETCM 141
+P+ + ++ K K LG+ TC+
Sbjct: 79 QPE-----FLSELFKACKELGIHTCL 99
>gnl|CDD|185129 PRK15207, PRK15207, long polar fimbrial outer membrane usher
protein LpfC; Provisional.
Length = 842
Score = 31.0 bits (70), Expect = 0.47
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 20/115 (17%)
Query: 214 RIDMLLTLANLSTPPESIPINLLIPIPGSKFE--ENKKVDPIEHVRIISVARILMPKSRL 271
R+D L ++ P + + +IP S F+ ++ AR +P+SR
Sbjct: 115 RVDSFPAL-KMAPPEACVAFDEIIPQATSHFDFNTQTLHLSFPQAAMMQTARGTVPESR- 172
Query: 272 RLAAGRAMMSDELQALCF---FSGANSIFVGDTLLTAKNPSYNKDTILFN-RLGL 322
+ + AL FSG+N + G T + SY D+ N R GL
Sbjct: 173 --------WDEGIPALLLDYSFSGSNGSYDG----TGSSSSYTSDSYYLNLRSGL 215
>gnl|CDD|181715 PRK09234, fbiC, FO synthase; Reviewed.
Length = 843
Score = 30.7 bits (70), Expect = 0.47
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 185 RLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP----PESIPINLLIPIP 240
RL+ LE+ + + G ++G+GE + +R + L + L E I N P
Sbjct: 220 RLRVLEDAGRLSVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFR-AKP 278
Query: 241 GSKFEENKKVDPIEHVRIISVARILM-PKSRL 271
+ E + I+VAR+++ PK R+
Sbjct: 279 DTAMAGVPDAGLEELLATIAVARLVLGPKMRI 310
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 30.2 bits (68), Expect = 0.66
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 291 SGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPD 325
+GAN D +L A++ + F ++GLIPD
Sbjct: 107 AGANLALACDIVLAAESARF---IQAFAKIGLIPD 138
>gnl|CDD|162967 TIGR02668, moaA_archaeal, probable molybdenum cofactor biosynthesis
protein A, archaeal. This model describes an archaeal
family related, and predicted to be functionally
equivalent, to molybdenum cofactor biosynthesis protein
A (MoaA) of bacteria (see TIGR02666).
Length = 302
Score = 29.2 bits (66), Expect = 1.7
Identities = 31/139 (22%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERD 121
T C +C YC+ ++S ++ +++ + + A E G + + EP R
Sbjct: 17 TDRCNLSCFYCHMEGEDRS---GGNELSPEEIERIVRVASEFGVRKVKITGG--EPLLRK 71
Query: 122 LSIIVDMIKGVKSLGLE--TCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT 178
++++I+ +K G++ + T G+L + A+ L +AGLD N ++DT Y +T
Sbjct: 72 --DLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG 129
Query: 179 THTFEDRLQTLENVRKSGI 197
+ ++ +E+ +G+
Sbjct: 130 RGALDRVIEGIESAVDAGL 148
>gnl|CDD|179671 PRK03906, PRK03906, mannonate dehydratase; Provisional.
Length = 385
Score = 28.3 bits (64), Expect = 3.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 187 QTLENVRKSGIKVCC 201
QTL N+ +GIKV C
Sbjct: 87 QTLRNLAAAGIKVVC 101
>gnl|CDD|184248 PRK13692, PRK13692, (3R)-hydroxyacyl-ACP dehydratase subunit HadA;
Provisional.
Length = 159
Score = 28.2 bits (63), Expect = 3.2
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 70 GYCNQSV---HNKSKLKASKLINVDQVLKEAKNAKENGATRYC 109
GY QS H + ++++ VDQVLK K G YC
Sbjct: 64 GYKAQSAFFKHANIAVADAQIVQVDQVLKFEKPIVA-GDKLYC 105
>gnl|CDD|162966 TIGR02666, moaA, molybdenum cofactor biosynthesis protein A,
bacterial. The model for this family describes
molybdenum cofactor biosynthesis protein A, or MoaA, as
found in bacteria. It does not include the family of
probable functional equivalent proteins from the
archaea. MoaA works together with MoaC to synthesize
precursor Z from guanine.
Length = 334
Score = 28.0 bits (63), Expect = 3.8
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 69 CGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT--RYCMGAAWREPKER-DLSII 125
C YC L +L+ +++ + + G R G EP R DL +
Sbjct: 24 CVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGG----EPLLRKDLVEL 79
Query: 126 VDMIKGVKSLGLETCMTL-GMLSFEQAQILSKAGLDYYNHNIDT--SERF 172
V + + + + +T G+L A+ L +AGL N ++D+ ERF
Sbjct: 80 VARLAALPGIE-DIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERF 128
>gnl|CDD|179594 PRK03562, PRK03562, glutathione-regulated potassium-efflux system
protein KefC; Provisional.
Length = 621
Score = 27.3 bits (61), Expect = 5.1
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 141 MTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTT 179
+ L L + +A + HN+ E PH T
Sbjct: 529 LVLESLGLGPYEARERADR-FRRHNLQMVEEMAPHENDT 566
>gnl|CDD|181250 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 27.2 bits (61), Expect = 6.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 292 GANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPD 325
GAN D +L A++ S+ + F ++GL+PD
Sbjct: 114 GANLALACDIVLAARSASFIQA---FVKIGLVPD 144
>gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 27.1 bits (61), Expect = 7.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 290 FSGANSIFVGDTLLTAKN 307
F N++ VG L AK
Sbjct: 119 FESPNTVRVGGETLRAKR 136
>gnl|CDD|180644 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau;
Validated.
Length = 563
Score = 26.7 bits (59), Expect = 7.8
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 54 LSKLLNIKTGGCPENCGYCN--QSVHNKSKL 82
++ LN G P CG C+ +S+ N + L
Sbjct: 58 FARCLNCVNGPTPMPCGECSSCKSIDNDNSL 88
>gnl|CDD|183248 PRK11636, mrcA, penicillin-binding protein 1a; Provisional.
Length = 850
Score = 26.6 bits (59), Expect = 7.9
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 219 LTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVA 262
LTL + PPE + I S+F E+ VDP+ R SVA
Sbjct: 69 LTLDQI--PPEMV--KAFIATEDSRFYEHHGVDPVGIFRAASVA 108
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,265,075
Number of extensions: 326567
Number of successful extensions: 645
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 42
Length of query: 328
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 234
Effective length of database: 3,963,321
Effective search space: 927417114
Effective search space used: 927417114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)