BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780485|ref|YP_003064898.1| biotin synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (328 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780485|ref|YP_003064898.1| biotin synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 328

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MSRSTVVPEENPTKKPKVWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNI 60
           MSRSTVVPEENPTKKPKVWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNI
Sbjct: 1   MSRSTVVPEENPTKKPKVWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNI 60

Query: 61  KTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER 120
           KTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER
Sbjct: 61  KTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER 120

Query: 121 DLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTH 180
           DLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTH
Sbjct: 121 DLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTH 180

Query: 181 TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP 240
           TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP
Sbjct: 181 TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP 240

Query: 241 GSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD 300
           GSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD
Sbjct: 241 GSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD 300

Query: 301 TLLTAKNPSYNKDTILFNRLGLIPDLSA 328
           TLLTAKNPSYNKDTILFNRLGLIPDLSA
Sbjct: 301 TLLTAKNPSYNKDTILFNRLGLIPDLSA 328


>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score = 23.9 bits (50), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 128 MIKGVKSLGLETCMTLGMLSFEQAQILSKA--------GLDYYNHNIDTSERFYPHVTTT 179
           + KG + L +E  +TLG   FE  +++  +        GL +Y+   +   RF  +    
Sbjct: 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL 182

Query: 180 H---TFEDRLQTLENVR 193
           H   T+ D L   E ++
Sbjct: 183 HYLATWNDILTIAEKLK 199


>gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 171

 Score = 23.1 bits (48), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 259 ISVARILMPKSRLRLAAGRAMMSDE--LQALC 288
           +SV ++ +P+  L++A   A+  DE  L+ LC
Sbjct: 1   MSVKKVNLPRLDLQIAVENALWGDEIHLRTLC 32


>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 22.7 bits (47), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 176 VTTTHTFEDRLQTL 189
           + T HTF+D+L+T+
Sbjct: 122 IMTAHTFDDQLETV 135


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,932
Number of Sequences: 1233
Number of extensions: 8818
Number of successful extensions: 23
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 328
length of database: 328,796
effective HSP length: 74
effective length of query: 254
effective length of database: 237,554
effective search space: 60338716
effective search space used: 60338716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)