HHsearch alignment for GI: 254780486 and conserved domain: COG0520
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].
Probab=99.86 E-value=3.8e-18 Score=133.29 Aligned_cols=321 Identities=19% Similarity=0.246 Sum_probs=201.3
Q ss_pred CCCCCH-HHHHHHHHHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCCCC--CEEEECCCCHHHHH-HHHHH---C
Q ss_conf 677988-999999999986378688--722443688589999999984012888--51674166024565-56663---1
Q gi|254780486|r 41 ALSSST-LLREKILSSLDSKIPIGS--GGSRLLCGNYNQHLELEEEAADFFGFE--KMLYFGSGYAANMA-ILSTL---P 111 (381)
Q Consensus 41 Gl~~~p-~v~~a~~~a~~~~~g~~~--~~sr~~~G~~~~~~~lE~~lA~~~g~e--~al~~~sG~~An~~-~i~~l---~ 111 (381)
T Consensus 30 a~~~~p~~V~~a~~~~~-~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~ 108 (405)
T COG0520 30 ATSQKPQAVLDAVAEYY-RRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSL 108 (405)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 56667889999999999-97402457554412799999999999999998199987729995983799999999702410
Q ss_pred CCCCCCCHHHHCCHHHH---H-HHHHCCCCCEEECCC-----CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf 68971004542026775---2-666408764030568-----81478997643100024786079714621576613468
Q gi|254780486|r 112 QATDLIVYDKLVHASIR---E-GINSGKAQAIAIPHN-----NINSFAENINKWRKSGGKGFPWIVVESIYSMDGDKAPL 182 (381)
Q Consensus 112 ~~~d~ii~D~~~HaSi~---~-g~~ls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm~G~~apL 182 (381)
T Consensus 109 ~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~d~~~~~i-------~~~Tklvais~vSn~tG~~~pv 181 (405)
T COG0520 109 KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLI-------TPKTKLVALSHVSNVTGTVNPV 181 (405)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHC-------CCCCEEEEEECCCCCCCCCCCH
T ss_conf 689989980465520089999999875968999841899972889998646-------9994499996641675540409
Q ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCC-CCCCEE-EEEECCCCCCCCCC--CCC---
Q ss_conf 99999863136089861311222347776401100001346521001346-565302-67524510010000--121---
Q gi|254780486|r 183 DDLVKIANDYDGFIVVDEAHATGVCGPLGKGLTHIIEERNNVIVMHSCSK-ALGSSG-ALVGSNKIIYDYLI--NYA--- 255 (381)
Q Consensus 183 ~~i~~l~~~y~~~LivDEah~~Gv~G~~G~G~~~~~~~~~~~iv~~TlsK-a~g~~G-G~i~~~~~ii~~l~--~~~--- 255 (381)
T Consensus 182 ~~I~~la~~~ga~v~VDaaq~~~h~-~-----id-v~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~ 254 (405)
T COG0520 182 KEIAELAHEHGALVLVDAAQAAGHL-P-----ID-VQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGM 254 (405)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCC-C-----CC-HHHCCCCEEEECCCCCCCCCCCEEEEEECHHHHHHCCCCCCCCCC
T ss_conf 9999999984998999771334756-6-----88-556189899976743257998529999866558437897778872
Q ss_pred --------------CCEECCC-CCCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCC-----CCC--CCCC
Q ss_conf --------------1000013-577502578988789886271--022478999999998764179-----789--9897
Q gi|254780486|r 256 --------------KPFIYTT-SPSPILAVVACEALKLIKRKP--ALHKSLLQLINITDKIANKKI-----GFS--SQSH 311 (381)
Q Consensus 256 --------------~~~ifst-~l~P~~~aaa~aal~~l~~~~--~~~~~l~~~~~~~~~~~~~~~-----g~~--~~s~ 311 (381)
T Consensus 255 ~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~ 334 (405)
T COG0520 255 IEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGG 334 (405)
T ss_pred EEECCCCCCCEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 44014455530156415315578437889869999999998579999999999999999998548984996466346774
Q ss_pred EEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 289995897999999999997791898622888888-----870399962878999999999999999988
Q gi|254780486|r 312 IQSIVIGDNKSCLNIAKNLQKKGFDIRAIRPPTVPI-----NTARLRISITLNVDEPTIVKLFDILPQIIS 377 (381)
Q Consensus 312 I~~v~~gd~~~a~~~~~~L~~~Gi~v~~i~~PtVp~-----~~~rlRi~v~a~~t~edi~~~~~~l~~v~~ 377 (381)
T Consensus 335 ~vsF~v~~-~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 335 IVSFNVKG-IHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred EEEEEECC-CCHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 69999789-59899999998678699825644326787537777579997425999999999999998741