HHsearch alignment for GI: 254780486 and conserved domain: COG1167
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].
Probab=99.82 E-value=3.9e-17 Score=126.96 Aligned_cols=358 Identities=14% Similarity=0.125 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHCCCEEEE------------------CCC------CEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHC
Q ss_conf 8999999999975983999------------------289------768980344656677--98899999999998637
Q gi|254780486|r 7 SFYEERLQKIKSKGRHRQL------------------LRR------QDIWDFTSHDYLALS--SSTLLREKILSSLDSKI 60 (381)
Q Consensus 7 ~~~~~~l~~~~~~g~~~~~------------------~~~------~~~l~f~s~dYLGl~--~~p~v~~a~~~a~~~~~ 60 (381)
T Consensus 43 ~Tv~~ay~~L~~~G~i~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~g~-p~~~~fp~~~~~~~~~~~~-~~~ 120 (459)
T COG1167 43 STVSRAYEELEARGYIESRPGSAPPSGRPVRLELLKPSDPELLEDDPSVIDFAGGL-PDPSLFPLEALRRALARVL-RNY 120 (459)
T ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHCCHHHHHHHHHHHH-HHC
T ss_conf 89999999999767855125666653444565521123422245787554768899-8810188899999999998-505
Q ss_pred CCCC-CCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEECCCCHH-HHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHCC
Q ss_conf 8688-7224436885899999999840128---8851674166024-565566631689710045420267752666408
Q gi|254780486|r 61 PIGS-GGSRLLCGNYNQHLELEEEAADFFG---FEKMLYFGSGYAA-NMAILSTLPQATDLIVYDKLVHASIREGINSGK 135 (381)
Q Consensus 61 g~~~-~~sr~~~G~~~~~~~lE~~lA~~~g---~e~al~~~sG~~A-n~~~i~~l~~~~d~ii~D~~~HaSi~~g~~ls~ 135 (381)
T Consensus 121 ~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g 200 (459)
T COG1167 121 GASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGALQALEALG 200 (459)
T ss_pred CHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCC
T ss_conf 61233226876888999999999999974998883038980649999999999847999999989998289999999869
Q ss_pred CCCEEECC----CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCC-CCCHH---HHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 76403056----88147899764310002478607971462157-66134---689999986313608986131122234
Q gi|254780486|r 136 AQAIAIPH----NNINSFAENINKWRKSGGKGFPWIVVESIYSM-DGDKA---PLDDLVKIANDYDGFIVVDEAHATGVC 207 (381)
Q Consensus 136 a~~~~f~H----nD~~~Le~~l~~~~~~~~~~~~~vv~egv~Sm-~G~~a---pL~~i~~l~~~y~~~LivDEah~~Gv~ 207 (381)
T Consensus 201 ~~~~~vp~d~~G~~~e~le~~~~~~~-----~k~~y~~-P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~ 274 (459)
T COG1167 201 ARVIPVPVDEDGIDPEALEEALAQWK-----PKAVYVT-PTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRY 274 (459)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHCCC-----CCEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHCC
T ss_conf 94786067888989799999985069-----7289978-89638898745999999999999975987998677433215
Q ss_pred CCCCCEEE--EEHHCCCCCCCCCCCCCCCC--CEEEEEECCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHC-
Q ss_conf 77764011--00001346521001346565--30267524510010000121100001357750257898878988627-
Q gi|254780486|r 208 GPLGKGLT--HIIEERNNVIVMHSCSKALG--SSGALVGSNKIIYDYLINYAKPFIYTTSPSPILAVVACEALKLIKRK- 282 (381)
Q Consensus 208 G~~G~G~~--~~~~~~~~~iv~~TlsKa~g--~~GG~i~~~~~ii~~l~~~~~~~ifst~l~P~~~aaa~aal~~l~~~- 282 (381)
T Consensus 275 ~--~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~---~~~~s~~~Q~~la~~--l~~G~ 347 (459)
T COG1167 275 D--GPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAA---DLGPSSLSQAALAAF--LLSGH 347 (459)
T ss_pred C--CCCCCCHHHHCCCCCEEEECCCHHHHCCCCCEEEEECCHHHHHHHHHHHHHH---CCCCCHHHHHHHHHH--HHCCH
T ss_conf 8--8998345762899978999132665146755499972999999999998762---569989999999999--97285
Q ss_pred -C----CHHHHHHHHHHHHHHHHHCCCC----CCCC--CCEEEEEECCHHHHHHHHHHHHHCCEEEEEE--CCCCCCCCC
Q ss_conf -1----0224789999999987641797----8998--9728999589799999999999779189862--288888887
Q gi|254780486|r 283 -P----ALHKSLLQLINITDKIANKKIG----FSSQ--SHIQSIVIGDNKSCLNIAKNLQKKGFDIRAI--RPPTVPINT 349 (381)
Q Consensus 283 -~----~~~~~l~~~~~~~~~~~~~~~g----~~~~--s~I~~v~~gd~~~a~~~~~~L~~~Gi~v~~i--~~PtVp~~~ 349 (381)
T Consensus 348 ~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~ 427 (459)
T COG1167 348 YDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPR 427 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCC
T ss_conf 99999999999999999999999974787637726995589999869988889999999986997945886635789889
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 0399962878999999999999999988738
Q gi|254780486|r 350 ARLRISITLNVDEPTIVKLFDILPQIISEGN 380 (381)
Q Consensus 350 ~rlRi~v~a~~t~edi~~~~~~l~~v~~E~~ 380 (381)
T Consensus 428 ~~~Rl~~s~-~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 428 NGLRLSFSS-PSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred CEEEEECCC-CCHHHHHHHHHHHHHHHHHHH
T ss_conf 828998898-999999999999999999762